Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g519 ATGGACAACGGAGACATTGAAAACGCGGAAGACGAGTTCGGCGGGCAAAGCGGACGCAAATACAGACCAGTCGTCTCGCATGACCGCGCTGTTCTCCAAATGTCCTCTTTGGATTCCGGATCTTCCTCTTCTCTCCCCGTCCCTCAATCACCTTTCACGAACCTTAAAATAAGCATGCAGGGAAACATGAGTTCTGATGCAAGAGAAGAGTCATCTACTAATCATGAAGAACTCAATGGTTCTGAAAGAGAATCCAAATTGGAATTGTTCGGTTTTGACTCTCTTGTTAATATTCTAGGTCTTAAGAGTATGACAGGGGAGGCAATTGCAGCTCCTTCGAGTCCTAGAGATGGCGAGGATGTTTCGAATACACCTGGGCGTTCCAAGGCTAATGATCTCAAATTAGGGACATTGATGGGAGTATTTGTGCCGTGCTTGCAAAACATTTTAGGAATTATCTACTATATACGATTTTCTTGGATTGTTGGTATGGCAGGCATTGGTCAGTCGCTTTTGCTGGTGTCCTTTTGTGGTTTGTGTACTTTCCTGACTTCGATATCATTGAGTGCTATCGCAACTAATGGTGCAATGAAGGGTGGGGGGCCATATTATCTCATTGGTCGTGCCCTTGGTCCAGAAGTTGGAGTTAGCATTGGACTATGTTTCTTCCTTGGGAATGCAGTAGCTGGATCTCTTTATGTGCTGGGAGCTGTAGAAACCTTCTTAGATGCCTTGCCAGGTGCTGGGATTTTTGGAGAGGTTGTCACAAAAGTTAATGGCACAGAAGCTGCAGTGGCCGTACCAAGTCCAAATTTGCATGACCTGCAAGTCTATGGGATAGTTGTGACGATAATCCTATGCTTTATTGTGTTTGGTGGTGTTAAGATGATCAATCGGGTTGCACCTGCTTTCCTTATACCTGTTTTATTCTCCTTGTTCTGCATATTTGTTGGGGCTGTTTTGGCAAGAAAGGATCACCCTGCTGAAAGTCCTATTTGCATTATCCTTAAGATATCTAAGAAGACCCTTAAATTCCTATTTAATAAAAACTATGATTATATAAAACTTCTTACTAAGGTTGTGGGGACCTCAACTTATTGTCAAACATCCAAACATTCTTTTTGTAACCAAATAACCTATAAGGTGACAAGCATGGTTGTTCCTTCTCTAATTACTTCAAATGCATACGTACCTCAAAAGAATAACCAACTTTGGATCAACTCGAGGTCAACCATAATTGGTAAAACCCTTAGAGTTGGAGTCACTGGCTTGAGTTTGAAATCCTTAAAAGATAATTGGAGCTCGAGTTATCAAAATACTAATAATGCTGGAATACCTGATCCTGATGGAGCTGTAAGCTGGAATTTCAATGCACTGGTCGGTCTATTTTTCCCTGCTGTAACGGGAATTATGGCAGGTTCAAATCGCTCTGCTTCATTGAGAGACACTCAACGTTCAATTCCTGTTGGAACATTGGCTGCGACTCTTTCTACTTCTGCAATGTACCTATTTTCTGTGCTTTTATTTGGATCTCTAGCAACAAGGGAGAAACTTTTGACAGACAGGCTACTAACTGCTACAATTGCTTGGCCTTTACCGGCAATTATTTACATTGGAATTATCCTTTCAACCTTAGGGGCGGCTCTTCAAAGCCTTACAGGTGCTCCACGGCTGCTTGCAGCAATAGCCAATGATGATATCCTTCCTGTTCTTCATTACTTCAGAGTTGCTGAAGGGAGTGAACCTCATATTGCAACCCTCTTTACTGCATTAATTTGTATTGGGTGTGTCATAATCGGGAATCTGGATCTTATCACACCAACAATTACCATGTTTTTCCTTTTGTGTTATGCTGGTGTGAACTTGTCTTGCTTCCTTCTGGATCTTCTAGATGCTCCCAGTTGGCGTCCACGATGGAAATTTCACCACTGGAGCCTCTCTCTTCTTGGAGCAGTTCTTTGTATAGTGATCATGTTCTTGATATCTTGGTCATTTACTGTGGTGTCCCTAGCCCTTGCAAGTCTCATATATTATTATGTATGCATCAAAGGGAAGGCTGGGGACTGGGGTGATGGCTTCAAGAGTGCATATTTCCAACTAGCCCTTCGTAGTCTTCGATCACTGGGGGCAAGCCAAGTGCACCCAAAGAACTGGTATCCTATTCCCCTCATATTCTGCCGGCCATGGGGGAAGCTGCCAGAGAATGTGCCCTGCCACCCTAAATTAGCTGACTTTGCTAACTGCATGAAGAAAAAGGGTCGTGGAATGTCCATTTTTGTCTCTATTTTAGATGGAGATTACCATGAGTGTGCAGAAGATGCCAAGACAGCCTGCAGGCAGCTGAGTACCTACATTGACTATAAGCGCTGTGAAGGTGTTGCAGAGATAGTTGTGGCCCCCAGTATGTCAGATGGTTTCCGTGGCATTGTCCAAACTATGGGCCTAGGCAATCTTAAGCCGAACATTGTGGTCATGCGATACCCTGAAATATGGCGTCGGGAAAACCTAATTGAAATCCCAGCTACCTTTGTTGGCATAATTAATGACTGCATTGTTGCAAACAAGGCAGTTGTGATTGTCAAGGGCCTTGATGAATGGCCCAATGAGTATCAAAGGCAGTATGGTACTATTGATCTGTATTGGATCGTGAGAGATGGGGGCCTTATGCTTCTCCTCTCCCAGCTCCTCCTTACCAAGGAGAGCTTTGAGAGTTGTAAGATTCAGGTCTTCTGCATTGCGGAGGAGGATTCTGATGCAGAGGAGCTCAAGGCTGATGTCAAGAAGTTTTTGTATGATCTTCGCATGCATGCTGAAGTGATTGTTATATCGATGAAATCATGGGATGCCCAAGGAGAAGGAGTGTCCCAGCAAGATGAATCAATAGAGGCATTCACGGGTGCTCAGCGGCGGATTGCTGGTTACTTGAGTGAGATGAAGGAGGCAGCTAAGAGGGAAGGAACTCCACTGATGGCTGATGGGAAATCTGTGGTTGTGAATGAGCAACAGGTGGAGAAATTTCTTTACACAACACTGAAGCTTAATTCGACAATACTTAGATACTCAAGAATGGCTGCAGTCGTGCTTGTGAGCTTACCACCACCACCTCTCAACCACCCAGCGTATTTCTACATGGAGTACATGGATCTTTTGGTAGAGAATGTACCTAGGCTTTTGATGGTAAGGGGATACCGTAGAGATGTTGTCACCCTTTTCACATAG 3219 43.96 MDNGDIENAEDEFGGQSGRKYRPVVSHDRAVLQMSSLDSGSSSSLPVPQSPFTNLKISMQGNMSSDAREESSTNHEELNGSERESKLELFGFDSLVNILGLKSMTGEAIAAPSSPRDGEDVSNTPGRSKANDLKLGTLMGVFVPCLQNILGIIYYIRFSWIVGMAGIGQSLLLVSFCGLCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGSLYVLGAVETFLDALPGAGIFGEVVTKVNGTEAAVAVPSPNLHDLQVYGIVVTIILCFIVFGGVKMINRVAPAFLIPVLFSLFCIFVGAVLARKDHPAESPICIILKISKKTLKFLFNKNYDYIKLLTKVVGTSTYCQTSKHSFCNQITYKVTSMVVPSLITSNAYVPQKNNQLWINSRSTIIGKTLRVGVTGLSLKSLKDNWSSSYQNTNNAGIPDPDGAVSWNFNALVGLFFPAVTGIMAGSNRSASLRDTQRSIPVGTLAATLSTSAMYLFSVLLFGSLATREKLLTDRLLTATIAWPLPAIIYIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLHYFRVAEGSEPHIATLFTALICIGCVIIGNLDLITPTITMFFLLCYAGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGAVLCIVIMFLISWSFTVVSLALASLIYYYVCIKGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACRQLSTYIDYKRCEGVAEIVVAPSMSDGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLIEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEELKADVKKFLYDLRMHAEVIVISMKSWDAQGEGVSQQDESIEAFTGAQRRIAGYLSEMKEAAKREGTPLMADGKSVVVNEQQVEKFLYTTLKLNSTILRYSRMAAVVLVSLPPPPLNHPAYFYMEYMDLLVENVPRLLMVRGYRRDVVTLFT* 1073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7926731 7982427 + Vvi10g519 Vvi10g519 771118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g519 1072 Pfam Solute carrier family 12 872 1071 IPR018491 GO:0006811|GO:0016020|GO:0022857
Vvi10g519 1072 Pfam Solute carrier family 12 740 861 IPR018491 GO:0006811|GO:0016020|GO:0022857
Vvi10g519 1072 TIGRFAM 2a30: K-Cl cotransporter 61 1072 IPR004842 GO:0006811|GO:0015377|GO:0016021
Vvi10g519 1072 Pfam Amino acid permease 140 330 IPR004841 GO:0016020|GO:0055085
Vvi10g519 1072 Pfam Amino acid permease 420 706 IPR004841 GO:0016020|GO:0055085
Vvi10g519 1072 PANTHER CATION-CHLORIDE COTRANSPORTER 1-LIKE ISOFORM X1 13 330 - -
Vvi10g519 1072 PANTHER CATION-CHLORIDE COTRANSPORTER 1-LIKE ISOFORM X1 416 1071 - -
Vvi10g519 1072 MobiDBLite consensus disorder prediction 12 26 - -
Vvi10g519 1072 Gene3D Amino acid/polyamine transporter I 134 349 - -
Vvi10g519 1072 Gene3D Amino acid/polyamine transporter I 360 688 - -
Vvi10g519 1072 MobiDBLite consensus disorder prediction 32 68 - -
Vvi10g519 1072 MobiDBLite consensus disorder prediction 1 82 - -
Vvi10g519 1072 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 13 330 IPR004842 GO:0006811|GO:0015377|GO:0016021
Vvi10g519 1072 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 416 1071 IPR004842 GO:0006811|GO:0015377|GO:0016021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g519 K14427 - vvi:100251415 1280.0