Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi10g52 | ATGAACCCAATAGACTCTTGCTGGCGCAGAAAGGCCAATTGGGCCTCTAATCGCCGCGCCTTGGCTGACTGCGCTGTAGGCTTTGGTAAAGGCGCAATGGGAGGAAAGTATGGCGCCATGTATGTAGTCACTACCCCTTCTGATGATCCGGTGAATCCCAAACCAGGCACACTTCGTTATGGTGTAATTCAGACTAAGCCGCTTTGGATCGTTTTTGCTAAGGACATGGTGATTACGCTGAAAAATGAGTTGATTATGAATAGTTTCAAGACTATTGATGGGAGGGGAGCGAAGGTGGAGATTGCTTACGGGCCGTGCATCACTATACAAGGTGTGAGCCATGTTATTATACATGGGATTAGTATTCATGACTGTAAGCCTGGGAAGTCTGGCCTTGTTAGGAGTACTACGATGCACGTTGGTCATCGCCTCGGCTCTGATGGCGATGCGATCAGTATATTCACTTCTTCGCATGTTTGGATTGACCATTGCTATCTCGCTAGCTGCACCGATGGCCTTATCGATGTTATTCATGCGTCTACTGCTATCACCATTTCTAACAACTACTTCTCTCACCATGATAAAGTAATGCTGTTTGGGCACGATGATCACTTCACTGCAGATAAAGTCATGAGTGTTACAGTCGCCTTCAACCATTTTGGCACTGGTCTAGTTCAAAGGATGCCAAGGGTTAGATTTGGCTATGCCCACCTTGCCAACAACAAGTATGATGAATGGGAGATGTATGCCATTGGTGGGAGTGCTAATCCAACCATCTTAAGCGAAGGGAACCACTTTACTGCTCCTGACAATGCCAACACCAAAGAGGTTACCAAGAGAGAGGTTAAAAGTGGTTGGAAGAATTGGAAATGGAGGTCCTCTAAGGATAAATTTGTGAATGGTGCATACTTTGTTCATCTGGATGGGGAAGCTGTGCCCCGCTTTACTCTCGATCCCAAGCATTTTCTGTTGCTGATGGTTCAATGGTTCCTGCTTTAA | 999 | 46.15 | MNPIDSCWRRKANWASNRRALADCAVGFGKGAMGGKYGAMYVVTTPSDDPVNPKPGTLRYGVIQTKPLWIVFAKDMVITLKNELIMNSFKTIDGRGAKVEIAYGPCITIQGVSHVIIHGISIHDCKPGKSGLVRSTTMHVGHRLGSDGDAISIFTSSHVWIDHCYLASCTDGLIDVIHASTAITISNNYFSHHDKVMLFGHDDHFTADKVMSVTVAFNHFGTGLVQRMPRVRFGYAHLANNKYDEWEMYAIGGSANPTILSEGNHFTAPDNANTKEVTKREVKSGWKNWKWRSSKDKFVNGAYFVHLDGEAVPRFTLDPKHFLLLMVQWFLL* | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 603859 | 605197 | + | Vvi10g52 | Vvi10g52 | 770651 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi10g52 | 332 | Pfam | Pectate lyase | 84 | 266 | IPR002022 | - | |
Vvi10g52 | 332 | PANTHER | PECTATE LYASE 18-RELATED | 1 | 307 | IPR045032 | GO:0030570 | |
Vvi10g52 | 332 | SMART | amb_all | 75 | 272 | IPR002022 | - | |
Vvi10g52 | 332 | Gene3D | - | 1 | 320 | IPR012334 | - | |
Vvi10g52 | 332 | PRINTS | Pollen allergen Amb family signature | 24 | 41 | IPR018082 | - | |
Vvi10g52 | 332 | PRINTS | Pollen allergen Amb family signature | 47 | 72 | IPR018082 | - | |
Vvi10g52 | 332 | PRINTS | Pollen allergen Amb family signature | 83 | 99 | IPR018082 | - | |
Vvi10g52 | 332 | PRINTS | Pollen allergen Amb family signature | 147 | 168 | IPR018082 | - | |
Vvi10g52 | 332 | PRINTS | Pollen allergen Amb family signature | 227 | 246 | IPR018082 | - | |
Vvi10g52 | 332 | PRINTS | Pollen allergen Amb family signature | 249 | 268 | IPR018082 | - | |
Vvi10g52 | 332 | PRINTS | Pollen allergen Amb family signature | 289 | 313 | IPR018082 | - | |
Vvi10g52 | 332 | PANTHER | PECTATE LYASE 16-RELATED | 1 | 307 | - | - | |
Vvi10g52 | 332 | SUPERFAMILY | Pectin lyase-like | 1 | 307 | IPR011050 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi10g52 | K01728 | - | vvi:100245293 | 680.248 |