Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g52 ATGAACCCAATAGACTCTTGCTGGCGCAGAAAGGCCAATTGGGCCTCTAATCGCCGCGCCTTGGCTGACTGCGCTGTAGGCTTTGGTAAAGGCGCAATGGGAGGAAAGTATGGCGCCATGTATGTAGTCACTACCCCTTCTGATGATCCGGTGAATCCCAAACCAGGCACACTTCGTTATGGTGTAATTCAGACTAAGCCGCTTTGGATCGTTTTTGCTAAGGACATGGTGATTACGCTGAAAAATGAGTTGATTATGAATAGTTTCAAGACTATTGATGGGAGGGGAGCGAAGGTGGAGATTGCTTACGGGCCGTGCATCACTATACAAGGTGTGAGCCATGTTATTATACATGGGATTAGTATTCATGACTGTAAGCCTGGGAAGTCTGGCCTTGTTAGGAGTACTACGATGCACGTTGGTCATCGCCTCGGCTCTGATGGCGATGCGATCAGTATATTCACTTCTTCGCATGTTTGGATTGACCATTGCTATCTCGCTAGCTGCACCGATGGCCTTATCGATGTTATTCATGCGTCTACTGCTATCACCATTTCTAACAACTACTTCTCTCACCATGATAAAGTAATGCTGTTTGGGCACGATGATCACTTCACTGCAGATAAAGTCATGAGTGTTACAGTCGCCTTCAACCATTTTGGCACTGGTCTAGTTCAAAGGATGCCAAGGGTTAGATTTGGCTATGCCCACCTTGCCAACAACAAGTATGATGAATGGGAGATGTATGCCATTGGTGGGAGTGCTAATCCAACCATCTTAAGCGAAGGGAACCACTTTACTGCTCCTGACAATGCCAACACCAAAGAGGTTACCAAGAGAGAGGTTAAAAGTGGTTGGAAGAATTGGAAATGGAGGTCCTCTAAGGATAAATTTGTGAATGGTGCATACTTTGTTCATCTGGATGGGGAAGCTGTGCCCCGCTTTACTCTCGATCCCAAGCATTTTCTGTTGCTGATGGTTCAATGGTTCCTGCTTTAA 999 46.15 MNPIDSCWRRKANWASNRRALADCAVGFGKGAMGGKYGAMYVVTTPSDDPVNPKPGTLRYGVIQTKPLWIVFAKDMVITLKNELIMNSFKTIDGRGAKVEIAYGPCITIQGVSHVIIHGISIHDCKPGKSGLVRSTTMHVGHRLGSDGDAISIFTSSHVWIDHCYLASCTDGLIDVIHASTAITISNNYFSHHDKVMLFGHDDHFTADKVMSVTVAFNHFGTGLVQRMPRVRFGYAHLANNKYDEWEMYAIGGSANPTILSEGNHFTAPDNANTKEVTKREVKSGWKNWKWRSSKDKFVNGAYFVHLDGEAVPRFTLDPKHFLLLMVQWFLL* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 603859 605197 + Vvi10g52 Vvi10g52 770651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g52 332 Pfam Pectate lyase 84 266 IPR002022 -
Vvi10g52 332 PANTHER PECTATE LYASE 18-RELATED 1 307 IPR045032 GO:0030570
Vvi10g52 332 SMART amb_all 75 272 IPR002022 -
Vvi10g52 332 Gene3D - 1 320 IPR012334 -
Vvi10g52 332 PRINTS Pollen allergen Amb family signature 24 41 IPR018082 -
Vvi10g52 332 PRINTS Pollen allergen Amb family signature 47 72 IPR018082 -
Vvi10g52 332 PRINTS Pollen allergen Amb family signature 83 99 IPR018082 -
Vvi10g52 332 PRINTS Pollen allergen Amb family signature 147 168 IPR018082 -
Vvi10g52 332 PRINTS Pollen allergen Amb family signature 227 246 IPR018082 -
Vvi10g52 332 PRINTS Pollen allergen Amb family signature 249 268 IPR018082 -
Vvi10g52 332 PRINTS Pollen allergen Amb family signature 289 313 IPR018082 -
Vvi10g52 332 PANTHER PECTATE LYASE 16-RELATED 1 307 - -
Vvi10g52 332 SUPERFAMILY Pectin lyase-like 1 307 IPR011050 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g52 K01728 - vvi:100245293 680.248