Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi10g528 | ATGACGTCTTCTGTGCATGATCTTTCTGATAATAGTGAAGCTGACGAGCCGCAAAAACACTCAGAACTTCAAGTTCAGTCTTCATCTCCTGCAGCTGGAGCGTCCCATCCTGGCAGTGCAGCTGCAAACATTCCATATGCAACACCTCCACAACTTGGGGCAGGACATGCTATGGCACAAGCAGCCTACCCATATCCAGATCCTTACTATAGAAGTATCTTTGCTCCCTATGATGCACAGCCCTATCCTGCACAACATTACAGCGGACAACCTATGGTCCACCTTCAGTTGATGGGAATTCAGCAAGCTGGAGTTCCTTTGCCATCAGATGCAGTTGAGGAGCCTGTGTTTGTTAATGCAAAACAATATCATGGCATTTTACGGCGGCGACAATCTCGTGCAAAAGCTGAATCAGAAAATAAAGTTGTTAAATCTCGGAAGCCATACTTGCATGAATCTCGGCATTTGCATGCATTGAGAAGAGCTAGGGGATGTGGGGGCCGGTTCCTGAATTCAAAGAAAAATGAAAGCGAACAGAACGAAGTGGCATCGGGTGACAAATCACAGTCCAATATCAATCTCAACTCTGATAAAAATGAACTTGCCTCCTCTGATAGCACATCTTGA | 627 | 45.61 | MTSSVHDLSDNSEADEPQKHSELQVQSSSPAAGASHPGSAAANIPYATPPQLGAGHAMAQAAYPYPDPYYRSIFAPYDAQPYPAQHYSGQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVVKSRKPYLHESRHLHALRRARGCGGRFLNSKKNESEQNEVASGDKSQSNINLNSDKNELASSDSTS* | 209 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 8295873 | 8310552 | + | Vvi10g528 | Vvi10g528 | 771127 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi10g528 | 208 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Vvi10g528 | 208 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 117 | 137 | IPR018362 | GO:0003677|GO:0016602 | |
Vvi10g528 | 208 | Gene3D | - | 112 | 173 | - | - | |
Vvi10g528 | 208 | PRINTS | CCAAT-binding transcription factor subunit B signature | 115 | 137 | IPR001289 | GO:0003700|GO:0006355 | |
Vvi10g528 | 208 | PRINTS | CCAAT-binding transcription factor subunit B signature | 146 | 169 | IPR001289 | GO:0003700|GO:0006355 | |
Vvi10g528 | 208 | ProSiteProfiles | NF-YA/HAP2 family profile. | 112 | 172 | IPR001289 | GO:0003700|GO:0006355 | |
Vvi10g528 | 208 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 | 1 | 193 | - | - | |
Vvi10g528 | 208 | SMART | cbf3 | 111 | 172 | IPR001289 | GO:0003700|GO:0006355 | |
Vvi10g528 | 208 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 114 | 169 | IPR001289 | GO:0003700|GO:0006355 | |
Vvi10g528 | 208 | MobiDBLite | consensus disorder prediction | 172 | 208 | - | - | |
Vvi10g528 | 208 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 1 | 193 | IPR001289 | GO:0003700|GO:0006355 | |
Vvi10g528 | 208 | MobiDBLite | consensus disorder prediction | 165 | 208 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13676 | PF02045 | CBFB_NFYA | 1.60E-26 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi10g528 | K08064 | - | vvi:100249692 | 404.831 |