Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g528 ATGACGTCTTCTGTGCATGATCTTTCTGATAATAGTGAAGCTGACGAGCCGCAAAAACACTCAGAACTTCAAGTTCAGTCTTCATCTCCTGCAGCTGGAGCGTCCCATCCTGGCAGTGCAGCTGCAAACATTCCATATGCAACACCTCCACAACTTGGGGCAGGACATGCTATGGCACAAGCAGCCTACCCATATCCAGATCCTTACTATAGAAGTATCTTTGCTCCCTATGATGCACAGCCCTATCCTGCACAACATTACAGCGGACAACCTATGGTCCACCTTCAGTTGATGGGAATTCAGCAAGCTGGAGTTCCTTTGCCATCAGATGCAGTTGAGGAGCCTGTGTTTGTTAATGCAAAACAATATCATGGCATTTTACGGCGGCGACAATCTCGTGCAAAAGCTGAATCAGAAAATAAAGTTGTTAAATCTCGGAAGCCATACTTGCATGAATCTCGGCATTTGCATGCATTGAGAAGAGCTAGGGGATGTGGGGGCCGGTTCCTGAATTCAAAGAAAAATGAAAGCGAACAGAACGAAGTGGCATCGGGTGACAAATCACAGTCCAATATCAATCTCAACTCTGATAAAAATGAACTTGCCTCCTCTGATAGCACATCTTGA 627 45.61 MTSSVHDLSDNSEADEPQKHSELQVQSSSPAAGASHPGSAAANIPYATPPQLGAGHAMAQAAYPYPDPYYRSIFAPYDAQPYPAQHYSGQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVVKSRKPYLHESRHLHALRRARGCGGRFLNSKKNESEQNEVASGDKSQSNINLNSDKNELASSDSTS* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8295873 8310552 + Vvi10g528 Vvi10g528 771127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g528 208 MobiDBLite consensus disorder prediction 1 46 - -
Vvi10g528 208 ProSitePatterns NF-YA/HAP2 subunit signature. 117 137 IPR018362 GO:0003677|GO:0016602
Vvi10g528 208 Gene3D - 112 173 - -
Vvi10g528 208 PRINTS CCAAT-binding transcription factor subunit B signature 115 137 IPR001289 GO:0003700|GO:0006355
Vvi10g528 208 PRINTS CCAAT-binding transcription factor subunit B signature 146 169 IPR001289 GO:0003700|GO:0006355
Vvi10g528 208 ProSiteProfiles NF-YA/HAP2 family profile. 112 172 IPR001289 GO:0003700|GO:0006355
Vvi10g528 208 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 1 193 - -
Vvi10g528 208 SMART cbf3 111 172 IPR001289 GO:0003700|GO:0006355
Vvi10g528 208 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 114 169 IPR001289 GO:0003700|GO:0006355
Vvi10g528 208 MobiDBLite consensus disorder prediction 172 208 - -
Vvi10g528 208 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 193 IPR001289 GO:0003700|GO:0006355
Vvi10g528 208 MobiDBLite consensus disorder prediction 165 208 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13676 PF02045 CBFB_NFYA 1.60E-26 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g528 K08064 - vvi:100249692 404.831