Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g528 ATGACGTCTTCTGTGCATGATCTTTCTGATAATAGTGAAGCTGACGAGCCGCAAAAACACTCAGAACTTCAAGTTCAGTCTTCATCTCCTGCAGCTGGAGCGTCCCATCCTGGCAGTGCAGCTGCAAACATTCCATATGCAACACCTCCACAACTTGGGGCAGGACATGCTATGGCACAAGCAGCCTACCCATATCCAGATCCTTACTATAGAAGTATCTTTGCTCCCTATGATGCACAGCCCTATCCTGCACAACATTACAGCGGACAACCTATGGTCCACCTTCAGTTGATGGGAATTCAGCAAGCTGGAGTTCCTTTGCCATCAGATGCAGTTGAGGAGCCTGTGTTTGTTAATGCAAAACAATATCATGGCATTTTACGGCGGCGACAATCTCGTGCAAAAGCTGAATCAGAAAATAAAGTTGTTAAATCTCGGAAGCCATACTTGCATGAATCTCGGCATTTGCATGCATTGAGAAGAGCTAGGGGATGTGGGGGCCGGTTCCTGAATTCAAAGAAAAATGAAAGCGAACAGAACGAAGTGGCATCGGGTGACAAATCACAGTCCAATATCAATCTCAACTCTGATAAAAATGAACTTGCCTCCTCTGATAGCACATCTTGA 627 45.61 MTSSVHDLSDNSEADEPQKHSELQVQSSSPAAGASHPGSAAANIPYATPPQLGAGHAMAQAAYPYPDPYYRSIFAPYDAQPYPAQHYSGQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVVKSRKPYLHESRHLHALRRARGCGGRFLNSKKNESEQNEVASGDKSQSNINLNSDKNELASSDSTS* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8295873 8310552 + Vvi10g528 Vvi10g528 771127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g528 208 MobiDBLite consensus disorder prediction 1 46 - -
Vvi10g528 208 ProSitePatterns NF-YA/HAP2 subunit signature. 117 137 IPR018362 GO:0003677|GO:0016602
Vvi10g528 208 Gene3D - 112 173 - -
Vvi10g528 208 PRINTS CCAAT-binding transcription factor subunit B signature 115 137 IPR001289 GO:0003700|GO:0006355
Vvi10g528 208 PRINTS CCAAT-binding transcription factor subunit B signature 146 169 IPR001289 GO:0003700|GO:0006355
Vvi10g528 208 ProSiteProfiles NF-YA/HAP2 family profile. 112 172 IPR001289 GO:0003700|GO:0006355
Vvi10g528 208 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 1 193 - -
Vvi10g528 208 SMART cbf3 111 172 IPR001289 GO:0003700|GO:0006355
Vvi10g528 208 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 114 169 IPR001289 GO:0003700|GO:0006355
Vvi10g528 208 MobiDBLite consensus disorder prediction 172 208 - -
Vvi10g528 208 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 193 IPR001289 GO:0003700|GO:0006355
Vvi10g528 208 MobiDBLite consensus disorder prediction 165 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g528 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - vvi:100249692 404.831
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1141 Cone9ag1129 . . . . Blo08g00259 . . . . . Bma07g00447 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi6g216 ECH 4 239 CCAAT-HAP2 Transcription Factor Family AT5G12840 57.0 4.8e-52 201.8
Vvi10g528 . 59 204 CCAAT-HAP2 Transcription Factor Family AT2G34720 58.7 6.6e-41 164.1
Vvi10g528 . 1 209 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.9 1.6e-54 209.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13676 PF02045 CBFB_NFYA 1.60E-26 No_clan Vvi TF