Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g54 ATGGACAAAGGATGGGGTCTCACCCTTGATTCTATTGCCATCAATTCGTTTCTCAACAAGCGCAGCCGTGGGATTCTGGAGTCTGGCCCCATGTTGGACATGCCGGTGGGTGATGAGAGGCGGGAGGTGGATTTCTTCGCCGAGAAGACTAGGAGCGTCAGTGTGAAGAAGGAGAATTCTCATGTGGATGAAGCTGCGATCACTGATTTGGATGTCAATACTGGGTTGAATCTTCTGACTGCTAACGCGGGAAGTGATCAGTCGACGGTGGAGGATGAGAATCCGGATAGGGAGAATAAGAGAGCCAAGATTGAGGTGGCGCAATTGCAAGTGGAGCTTGAACGTATGAATGCCGAGAACCAAAAGCTGCGAGGGATGCTGAACCAGGTGACCAACAACTACAGCACTCTTCAGATGCATCTCGTCACACTTATGCAGCAGCAGAGCCAGCAGAACCGTGGAGCCGAAAGCCTCCAAGAACATGGGTCTGTCGGAGGAAAATCTGATGAGAAGAAACATGAGGTTGCGGGAGCGGTGGTGCCCAGGCAGTTCATCGATCTAGGCCCAACTGCCACAGCTGACACGGATGAGCCATCTCAATCTTCATCAGAAGAAAGAACCCGGGATCTCTCTGGATCACCCCAGAATCATCAGGAAAACGGAAAAGGAGCTGGCAGGGAAGAAAGCCCAGAATCTGAAACACAAGGTTGGGTCCAGAACAAGGCTTCCAAATTGAGTCCTCCCAAGACTATTGATCAGTCCGCAGAGGCCACAATGAGGAAAGCCCGCGTCTCGGTTCGTGCCCGATCAGAGGCTCCCATGATCACTGATGGATGCCAATGGCGCAAGTATGGGCAGAAAATGGCGAAGGGGAACCCATGCCCGCGAGCCTACTACCGATGTACCATGGCAGTTGGCTGCCCAGTTCGCAAACAAGTTCAGAGGTGTGCCGAGGACAGGTCAATATTGATAACTACCTATGAAGGAACCCACAACCACCCACTCCCTCCGGCTGCAATGGCCATGGCATCAACGACATCAGCAGCTGCAAACATGCTACTTTCAGGATCCATGTCGAGCGCAGATGGACTAATGAACCCGAATTTCCTGGCCAGGACGATACTCCCTTGCTCATCTAACATGGCGACTATTTCAGCTTCAGCGCCATTCCCCACAGTGACATTGGACCTCACCCACACTCCTTCCCCATTACAGTACCAAAGGCCAACTTCCCATCAGGCCCTCTACAACCAATCCAAATTCTCAGGGCTGCAGCTCTCTCAGGACATGGAATCAGCCCACCAAGCTCCACCAACATTGCATCAGCCACAGCCAGCCTCATTGGCTGACACAGTGAGCGCTGCCACAGCTGCCATCACCGCCGACCCAAACTTCACCGCAGCTCTCGCAGCTGCCATAACCTCGATCATCGGCGGTGGCGCCGCCCACCCAAACACCACCATTAACAGCACCTCCAATGCAACCAACTCCAGCAACACCAACAAAATCAGCAGCTTCCCGACGGGGAATTAA 1533 53.23 MDKGWGLTLDSIAINSFLNKRSRGILESGPMLDMPVGDERREVDFFAEKTRSVSVKKENSHVDEAAITDLDVNTGLNLLTANAGSDQSTVEDENPDRENKRAKIEVAQLQVELERMNAENQKLRGMLNQVTNNYSTLQMHLVTLMQQQSQQNRGAESLQEHGSVGGKSDEKKHEVAGAVVPRQFIDLGPTATADTDEPSQSSSEERTRDLSGSPQNHQENGKGAGREESPESETQGWVQNKASKLSPPKTIDQSAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSILITTYEGTHNHPLPPAAMAMASTTSAAANMLLSGSMSSADGLMNPNFLARTILPCSSNMATISASAPFPTVTLDLTHTPSPLQYQRPTSHQALYNQSKFSGLQLSQDMESAHQAPPTLHQPQPASLADTVSAATAAITADPNFTAALAAAITSIIGGGAAHPNTTINSTSNATNSSNTNKISSFPTGN* 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 618602 621252 + Vvi10g54 Vvi10g54 770653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g54 510 MobiDBLite consensus disorder prediction 488 510 - -
Vvi10g54 510 SMART WRKY_cls 275 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi10g54 510 Pfam WRKY DNA -binding domain 277 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi10g54 510 PANTHER WRKY TRANSCRIPTION FACTOR 31-RELATED 39 499 - -
Vvi10g54 510 ProSiteProfiles WRKY domain profile. 270 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi10g54 510 MobiDBLite consensus disorder prediction 205 220 - -
Vvi10g54 510 MobiDBLite consensus disorder prediction 163 177 - -
Vvi10g54 510 Coils Coil 99 133 - -
Vvi10g54 510 MobiDBLite consensus disorder prediction 232 253 - -
Vvi10g54 510 MobiDBLite consensus disorder prediction 427 448 - -
Vvi10g54 510 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 39 499 IPR044810 GO:0003700
Vvi10g54 510 SUPERFAMILY WRKY DNA-binding domain 268 336 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi10g54 510 MobiDBLite consensus disorder prediction 146 256 - -
Vvi10g54 510 Gene3D WRKY domain 260 337 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g54 Vvi12g396 ECH
Vvi10g54 Vvi19g540 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13679 PF03106 WRKY 4.30E-24 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g54 - - vvi:100255611 948.732