Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g547 ATGAGTGACCGTCCATATGAACTCGGGAGGCCTGCCTCAGGTAAAAGAAGGTTAAAAGATTTATTGCTTAAAAGTGATAATCGCACTTGTGCTGATTGTGGTGCTCCAGATCCCAAATGGGCGTCTGCAAATATTGGAGTCTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACACATATCTCAAAGGTGTTGTCTGTGGCATTGGATGATTGGTCTGATGATGAAATTGATGCCATGGTTGAGGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTTTATTCCTGAAGGAGTCACAAAGCCTAAACCTAATTCCAGCCATGAGGAGCGAATGAGATTCATCAGGTCAAAATATGAGCTTCAAGAATTTTTGAAACCTAGCTTGCGGATTGCTTCAGTTTCTTCTGGAAAGAGCTCTCTCCAATCATCTTTTTCTAGAAAGTTGATGGATAATTTTCGAAGTTCAAACTCACAGAAATTGGAAGGCATGGTAGAGTATATTGGATTGTTGAAAGTCAAAGTGATAAGAGGCAAGAATTTAGCAGTCAGAGACATGCTATCAAGTGATCCCTATGTTGTCCTGACACTTGGCCCACAGACTGTCCAGACACAGGTAATAACGAGCAACTTGAATCCAGTCTGGAATGAGGAACTCATGCTTTCTGTGCCCATGGATTATGGGCCCATAAAAGTGAAAGTCTTTGACCATGACACGTTCTCTGCTGATGACATAATGGGAGAAGCCGAGATTGACATCCAACCCCTGATAACATCCGCCATGGCATTTGGAAATGCAGAAATGTTTGGAGACATGCAGATAGGAAAATGGCTGAAATCACACGACAACGCCCTCTTAGAAGACAGCATCATAAACATTATTGGTGGGAAGGTGAAACAGGAGGTGCAACTGAAGCTCCAGAATGTTGAATCTGGAGAACTAGATCTAGAAATAGAGTGGCTGCCTCTTGACCAATAG 993 42.2 MSDRPYELGRPASGKRRLKDLLLKSDNRTCADCGAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVALDDWSDDEIDAMVEVGGNSSANSIYEAFIPEGVTKPKPNSSHEERMRFIRSKYELQEFLKPSLRIASVSSGKSSLQSSFSRKLMDNFRSSNSQKLEGMVEYIGLLKVKVIRGKNLAVRDMLSSDPYVVLTLGPQTVQTQVITSNLNPVWNEELMLSVPMDYGPIKVKVFDHDTFSADDIMGEAEIDIQPLITSAMAFGNAEMFGDMQIGKWLKSHDNALLEDSIINIIGGKVKQEVQLKLQNVESGELDLEIEWLPLDQ* 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8790410 8800569 + Vvi10g547 Vvi10g547 771146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g547 330 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Vvi10g547 330 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Vvi10g547 330 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Vvi10g547 330 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Vvi10g547 330 Pfam C2 domain 174 265 IPR000008 -
Vvi10g547 330 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 8 330 - -
Vvi10g547 330 CDD C2_ArfGAP 173 317 - -
Vvi10g547 330 SMART C2_3c 175 270 IPR000008 -
Vvi10g547 330 Gene3D Arf GTPase activating protein 6 136 IPR038508 -
Vvi10g547 330 CDD ArfGap 18 124 - -
Vvi10g547 330 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 8 330 IPR044518 GO:0005096|GO:0005543
Vvi10g547 330 Gene3D C2 domain 171 330 IPR035892 -
Vvi10g547 330 ProSiteProfiles C2 domain profile. 162 271 IPR000008 -
Vvi10g547 330 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096
Vvi10g547 330 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 171 268 IPR035892 -
Vvi10g547 330 SMART arf_gap_3 16 137 IPR001164 GO:0005096
Vvi10g547 330 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 129 IPR001164 GO:0005096
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g547 K12486 - vvi:100268078 640.573