Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g56 ATGGACTGGACTAGGGGATGTACCCTTGGTCGTGGGTCCTCCGCCACCGTCTCCATCGCCACCTCCCACCTCTCCGGTGACATCTTCGCCGTGAAATCAACTGAGCTCTCCCAGTCCAAATTGCTCAAGAGGGAACAGAGGATTCTCTCCACAGTGAGGTCTGCTCACGTGATTGAATACAGAGGGTGGAATGTCACGTGCGAGAATGGGAAGCAGATGTACAATCTGTGCATGGAGTACGCCGCCGGCGGCACGCTCAAGCAGCGCGGCAGCCTGGGAGAGGCCGCCATCAGAGCCAACACGCGCGCCATTCTGCAGGGCCTTCAGTACCTACATTCCAATTGCATTGTCCACTGCGACATCAAAAGCGAGAATATTCTGATCACCGGCGACGGGTTGAAGATCGGCGACCTGGGTTGCGCTAGACTCGCCGACGATTTCTCGGATTCGGTTTGTGGGACGCCGGCGTTCATGGCGCCCGAGGTGGCGCGCGGGGAGGAGCAGGGGTTCGCCGCTGATGTGTGGGCTCTTGGGTGCACGATCATTGAGATGGCCACCGGGCGGGCGCCGTGGACGGATGTTTCCGACCCGGTTTCGGCTGTTTACCGAATTGGGTTTTCCGGGGACGTGCCGGAGATTCCAGGGTGGGTGTCGGAGGACGCTAAGGATTTTTTGGGGAAGTGTTTGGTGAGGGACCCAGTGCAGAGGTGGTCAGTTGGCGAGCTTCTTGGGCACCCTTTTGTCAACGAAGCTTGTGTTTTTTCCAAAGAAGTTTATGGGTCAAGTTCAAGCAGTCCGACAAGTGTGTTGGATCAAAGGTTCTGGAGCTCCTCCATTGAAGAACTGTACCCATTTCACAAGAAATCTTGGAATTCTCCAAGGGAGAGGATCCACTTCTTGGCAAATTCAAATTCAAATTCAGGATTGCCCAATTGGGGATGGGATGAAAATTGGGTGACAGTGAGGAGTGGCAGCATGGAAGAACCAGAGGTGGTTTCTGAGGCTCCCACAGCCACCATGGCTTGGGCCGGTGAGGACCCTGGCATGGTAGGTTTCAGGGAACCCACACCCACTGCTGCAATGGACAGTTGTAATAGTTCTAGAATGGACTTTCTGTCCTCATCCACCCTAACTCCTAATTCATCTTTCATGTATGAGGTGAAAATGGATGAAGTTGGGGGGTTACTTGATATTATCCAAAGAGCAAGAGCCTTCACAAAATCATCTGCCCATGTCCATATCACACAATTCTCATATAAAAGAAAAAAGTTGAGAGATTGCCCACAACTCACAACTTTTCAACCCACAACTACCAAATCTAACCACACCATGGACTGGACTAGGGGATGTACCCTTGGTCGTGGGTCCTCCGCCACCGTCTCCATCGCCACCTCCCACCTCTCCGGTGACATCTTCGCCGTGAAATCAACTGAGCTCTCCCAGTCCAAATTGCTCAAGAGGGAACAGAGGATTCTCTCCACAGTGAGGTCTGCTCACGTGATTGAATACAGAGGGTGGAATGTCACGTGCGAGAATGGGAAGCAGATGTACAATCTGTGCATGGAGTACGCCGCCGGCGGCACGCTCAAGCAGCGCGGCAGCCTGGGAGAGGCCGCCATCAGAGCCAACACGCGCGCCATTCTGCAGGGCCTTCAGTACCTACATTCCAATTGCATTGTCCACTGCGACATCAAAAGCGAGAATATTCTGATCACCGGCGAGGGGTTGAAGATCGGCGACCTGGGTTGCGCTAGACTCGCCGACGATTTCTCGGATTCGGTTTGTGGGACGCCGGCGTTCATGGCGCCCGAGGTGGCGCGCGGGGAGGAGCAGGGGTTCGCCGCTGATGTGTGGGCTCTTGGGTGCACGATCATTGAGATGGCCACCGGGCGGGCGCCGTGGACGGATGTTTCCGACCCGGTTTCGGCTGTTTACCGAATTGGGTTTTCCGGGGACGTGCCGGAGATTCCAGGGTGGGTGTCGGAGGAGGCTAAGGATTTTTTGGGGAAGTGTTTGGTGAGGGACCCTGTGAAGAGGTGGTCAGTTGGCGAGCTTCTTGGGCACCCTTTTGTCAACGAAGCTTGTGTTTTTTCCAAAGAAGTTTATGGGTCAAGTTCAAGCAGTCCGACAAGTGTGTTGGATCAAAGGTTCTGGAGCTCCTCCATTGAAGAACTGTACCCATTTCACAAGAAATCTTGGAATTCTCCAAGGGAGAGGATCCAGTTCTTGGCAAATTCAAATTCAAATTCAGGATTGCCCAATTGGGGATGGGATGAAAATTGGGTGACAGTGAGGAGTGGCAGCATGGAAGAACTAGAGGTGGTTTCTGAGGCTCCCACAGCCACCATGGCTTGGGCCGGTGAGGACCCTGGCATGGTAGGTTTCAGGGAACCCACACCCACTGCTGCAATGGACAGTTGTAATAGTTGTAATTTGTCACGTTTAAAATGTAAATGCATGAATTATGTTTTTTGTGGAAATCTTAATTTTGATTTTGTGGCAAATTTTAATGATAGTTCCAGTCTCATCATTAATCCATTCTCAGTAATGGAAAACAGAGGAGCTCAACCCCCAATTGAGCTCATGGTGGAAGCTACTTCGAATAGCACAAGCCAAGAATATCATAGCCACGAAAGCATCGTCTCCAAGCCACCATTGGAATCCTTCTTAACCAGGCTCCATGCTGGTTACTTCAGAATAAGCCTCTCTCTGGGTAGCCAAGCTTTGCTATGGAAGACTCTGAGTGAGGCCAAGAGCGACTTGCAACCTCTTCGGCATGTGTCCCAGATGCTCCCTCTGCTGGCTTTCCTCCTACTTTGGTATCTCTCAGTTCTTACATCATTTTGCATGTTTACACTAGGCATGGTCCACTATCTGGTGGTTTTTGTCACTCTTTATCAGCGTCTGTCGGGTGGTGATCGGCTTCCAGTGATGCTCCGGCCTGTTTTCTTCCTGTTCTTTGCTGCGCCGAGCATGGCAAGCTTGGCTTGGAAGTCGATATCTGGGACTTTTGACACCACTTCAAAGATGCTTTTCTTCCTCTCACTCTTCCTCTTCACATCGCTGGCATGCAGGCCAACTCTTTTCAAGAAATCTATGAGGAAGTTCAATGTGGCATGGTGGGCTTACTCTTTTCCCCTCACCTTCCTTGCTCTAGCCTCTGCGGAATATGCACAGAAGGTGGAAGGTGAAATAGCTCCTGTTCTGATGCTCATGCTCATAGCCTTCTCTGTCTTGGTTTGCCTCAGCTTGATGCTCTTCACTGCACTCAACACTAAAGCCCTTCTCCTAGGAAATGATCCCATTCTGAAATTTTGCAAATCTCAAAACAAGGAGGGCTTGACCATGGTGTATAGGAATGGAGGGTAA 3369 51.56 MDWTRGCTLGRGSSATVSIATSHLSGDIFAVKSTELSQSKLLKREQRILSTVRSAHVIEYRGWNVTCENGKQMYNLCMEYAAGGTLKQRGSLGEAAIRANTRAILQGLQYLHSNCIVHCDIKSENILITGDGLKIGDLGCARLADDFSDSVCGTPAFMAPEVARGEEQGFAADVWALGCTIIEMATGRAPWTDVSDPVSAVYRIGFSGDVPEIPGWVSEDAKDFLGKCLVRDPVQRWSVGELLGHPFVNEACVFSKEVYGSSSSSPTSVLDQRFWSSSIEELYPFHKKSWNSPRERIHFLANSNSNSGLPNWGWDENWVTVRSGSMEEPEVVSEAPTATMAWAGEDPGMVGFREPTPTAAMDSCNSSRMDFLSSSTLTPNSSFMYEVKMDEVGGLLDIIQRARAFTKSSAHVHITQFSYKRKKLRDCPQLTTFQPTTTKSNHTMDWTRGCTLGRGSSATVSIATSHLSGDIFAVKSTELSQSKLLKREQRILSTVRSAHVIEYRGWNVTCENGKQMYNLCMEYAAGGTLKQRGSLGEAAIRANTRAILQGLQYLHSNCIVHCDIKSENILITGEGLKIGDLGCARLADDFSDSVCGTPAFMAPEVARGEEQGFAADVWALGCTIIEMATGRAPWTDVSDPVSAVYRIGFSGDVPEIPGWVSEEAKDFLGKCLVRDPVKRWSVGELLGHPFVNEACVFSKEVYGSSSSSPTSVLDQRFWSSSIEELYPFHKKSWNSPRERIQFLANSNSNSGLPNWGWDENWVTVRSGSMEELEVVSEAPTATMAWAGEDPGMVGFREPTPTAAMDSCNSCNLSRLKCKCMNYVFCGNLNFDFVANFNDSSSLIINPFSVMENRGAQPPIELMVEATSNSTSQEYHSHESIVSKPPLESFLTRLHAGYFRISLSLGSQALLWKTLSEAKSDLQPLRHVSQMLPLLAFLLLWYLSVLTSFCMFTLGMVHYLVVFVTLYQRLSGGDRLPVMLRPVFFLFFAAPSMASLAWKSISGTFDTTSKMLFFLSLFLFTSLACRPTLFKKSMRKFNVAWWAYSFPLTFLALASAEYAQKVEGEIAPVLMLMLIAFSVLVCLSLMLFTALNTKALLLGNDPILKFCKSQNKEGLTMVYRNGG* 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 641936 648890 + Vvi10g56 Vvi10g56 770655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g56 1122 CDD STKc_MAPKKK 2 248 - -
Vvi10g56 1122 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 444 790 - -
Vvi10g56 1122 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 347 - -
Vvi10g56 1122 Pfam Protein kinase domain 450 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g56 1122 Pfam Protein kinase domain 7 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g56 1122 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Vvi10g56 1122 Gene3D Transferase(Phosphotransferase) domain 1 2 297 - -
Vvi10g56 1122 Gene3D Transferase(Phosphotransferase) domain 1 438 741 - -
Vvi10g56 1122 Pfam Voltage-dependent anion channel 945 1088 IPR004695 GO:0016021|GO:0055085
Vvi10g56 1122 SUPERFAMILY Protein kinase-like (PK-like) 2 308 IPR011009 -
Vvi10g56 1122 ProSiteProfiles Protein kinase domain profile. 446 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g56 1122 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Vvi10g56 1122 ProSiteProfiles Protein kinase domain profile. 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g56 1122 SMART serkin_6 446 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g56 1122 SMART serkin_6 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g56 1122 Gene3D - 942 1096 IPR038665 -
Vvi10g56 1122 SUPERFAMILY Protein kinase-like (PK-like) 445 753 IPR011009 -
Vvi10g56 1122 ProSitePatterns Protein kinases ATP-binding region signature. 452 475 IPR017441 GO:0005524
Vvi10g56 1122 PANTHER MAP KINASE KINASE KINASE 1 347 - -
Vvi10g56 1122 PANTHER MAP KINASE KINASE KINASE 444 790 - -
Vvi10g56 1122 CDD STKc_MAPKKK 445 691 - -
Vvi10g56 1122 ProSitePatterns Serine/Threonine protein kinases active-site signature. 559 571 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g56 Vvi12g395 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76003 PF00069 Pkinase 3.60E-52 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g56 K20716 - vvi:100853501 813.913