Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g562 ATGGCTTTGCAAGTAATACAAGTTCATCTGGTCACCATCATCATCAGCATCATCTCCTTGGTATTCTCATTGAAGGAAACGAAAGCATCCACAGCCAAGCCTGGTTGCCCAGAGACATGTGGGAATCTTGCCATTGTTTATCCATTTGGTATTGGAGAAGGTTGCTACCTTGACAAACGTTTTGAGATCACATGCAACAACTCTTCCAATCCTCACCCTGTTCTCCGCCTCGACCAGAAAAAAGAAGCTGAAGTTTTGGATATGTCTCTGGAACATGTGAGAATCAGAGATTGGACTTCGCCTCTTTGTTATGCCAATAACGCATTGGAAGGGAAAAGCTATTCCCAGTTCACATTAGCGCCCCCCATGGAGCCTTTCAGTTATTCCCACACTGAAAACAAGTTGATAGGCATTGGGTGTGACATATTTGCTTACATTGGCGATTTCCATAGTACAAATTCCAGCATCAAAAACTTCATCAGTGGGTGTGTCTCCATCTGCAATGGCCAAGGCTGGTCTTGGCTTGATACTAACTACTCCTGCTCTGGCATTGGCTGCTGCCAGACTACTTTCCCTTATGATCTTCCCAATTTTGATGTACGGGTTGGTAACATGAGCATCTGGCAAGAGGCCAAGGACTGGTCCTCCAATCAATGTTGCATTGTCCTCATTGCAGAGAATAACTTCTCTGGATTCCACCAATTTGACATCTCATTCTCCAATCAAAACATGAAGTACTTTTATCCTGCAGTGCTTAAATGGGAAATCGGGAACAAGTCCTGCCATGAAACACAAAAGAGAGGAGATTATGCATGTGGCCGCAACAGTCATTGTATTAATTCCAAGAAAGGCAGTGGATATAGGTGTCTTTGCAATCCAGGCTACCGCGGGAACCCCTATCTTCCAGATGGCTGCATAGATGTTGATGAGTGCATGGAGTCAAACAATACTCTTTGCCAAAAAGGAGCTGTTTGCACTAACAAGAATGGTAGCTACTATTGCGACTGCCCACCTGGTTACTACAGAGATGATGACAAACCTGAATATGAGTGTGTACGCAACAAAGGAAAACTCAAGCCAGCTCTTCTTGTTTCTTCAGGTATAACATTTTCCCAATGTCTCCCTCATGTTCACCCTCTTCTTGCTCTTGAGTTTGTTGTTAATTACGTACCTTTGTGGCTTATACATGCAGGAATAGTAGTCACTCTTGTTCTTCTCATCCTACCTTCTATTGGCTTTTGGTTGAATCAAGAACTTGAGAAGAGAAAGAAAAGCAAACTCAAGCAGATGTCCTTCAAGAAGAATGGTGGTCTTCTAATGCAACAGCAAATCTCTTCAAGTAGTATAGGAAGTAGCGTTGAGAAAACAAAACTCTATACCATAGGAGAGTTGGAGAAGGCAACAGACAATTTCAATGCAGGTAGAGTTCTTGGAAAGGGAGGTCGTGGTAAAGTATACAAAGGGATGCTATTAGATGGAAGCATAGTGGCCATTAAGAAATCAATTGTAGTTGATGAAAGGCAAGTCGTTGAGTTTATCAACGAAGTTTTCATTCTTTCACAGATTAACCATAGGCACATAGTGAAACTGTTAGGTTGCTGTTTGGAGAGTGAAGTTCCTTTACTGGTTTATGAATACATCTCCAATAACACTCTCTCCCACCATCTCCATAATGAGGACCATGCATCAACATTGTCTTGGGAAAAGCGGTTGCGAATTGCAGATGAAATTGCAGGAGCCCTAGCATATTTACATTCATATGCTTCTACAGCTATCCTTCATAGGGATATCAAGTCTAGGAACATACTGCTGGATGAGAACTTCAGGGCTGTGGTTTCTGATTTTGGACTTTCAAGGTTAATTGCCCATGAAAAAACACACTTGAGCACATTAGTGCAGGGCACATTTGGTTACTTGGATCCAGAATATTTTCGGTCGGGTCAGTTTACAGATAAAAGTGATGTATACGGGTTTGGGATGATTCTTGCTGAACTTCTCACGGGTGAAAAAGTGATTTGTTCTAGTAGATCTGAAGAAAGTCTAGCAATTCATTTTAGATTGGCAATGAAACAAAATTGCCTGTTTGAAATTCTAGACAAGGTGATAGTGAATGAAGGTCAGAAAAAGGAGATTCTTGCTGTTGCTAAAATTGCTAAGAGATGCCTGAAGTTGAGTGGGAAGAAAAGGCCAGCCATGAAAGAAATAGCAGCAGATCTCCACCAATTGAGGACTATGAAGCAGCCATCACTTCAGCAGACCTGCCAGGACAACTGCTCTGTAAGTGAAAGGTACTCCATTTCTTCTGCATCAACAATAATACTAGATCATCCGGTCACCATCATCATCCTCTTGCTATTCTCATCGAAGGAAACAGCAGCGTCCATGGCAAAGCCTGGTTGCCAAGAGACATGTGGGAACGTTGGGATTGTTTATCCATTTGGTATTGGCAGAGGCTGCTACCATGACAAAAATTTTGAGGTCTCATGCGCCTACTCCTCCAACCCTCCACGCCCTTCTCTTGTGGTGCTTCAAGTTGAAGTTTTGAAGACGTCACCGGATAATGTGAGAATTTGTGATTGGACTGTGGCTGCTTGTTACTTTGATTACACATCACAAGCGGCATCGGCTTTTACGCCCATGGAGCCTTACAGTTATTCCCACGCAGAAAATAAGTTTATAGGCATTGGGTGTGACATAGGTGCTTATATCGGTGAATTAAATCGTACAAGCCGTAGCCTAACAAGATACGCGGGCGGGTGTGTGTCAGTTTGCCACATACCTGGAGGTCAAGCCTGGTCTAATCGTACTTCCTGCTCTGGAATTCGCTGCTGCCAGACTACTTTCTCAAACGATCTTTCAAACGTTGATCTATGGCTTACCAACATGAGCATGTGGTCCAAGGCCATGGCCGGGTCGAACTCCAATCCATGTAGCTTTGCCATCATTGCCGAGAAGAACTTCTCGGACTTTGATCGATTTGACACCACGTTGTCCGGTGAAAACAAAACCTACTTTTACCCTGCAATATTGAATTGGGCAATCGGAAACAAATCTTGCCAAGAAGCCCGAAAAAGAAGCCATTATGCATGTGGCAGCAACAGTCGTTGTGTTGATTCTGATCAAGGCAGTGGATATAAGTGTCGTTGCAGTCAAGGCTACCGCGGGAACCCTTACCTTCAAGATGGCTGCATAGATATTAATGAGTGCATGGACCCAAACAACACTCTTTGCAAAAAAGGAGCTGTATGCATAAACACATATGGAGGCTACTATTGTGCCTGCCCACCTGGTTACCATAGCCATGATAGCCAACCTGAACATGGGTGTGTACGTGACAAAGTAAAACTAAAGGCAGCTATTCTCGTTACATCAGGAATAGGAATAGCTGTTGTTCTTCTGATCCTACTGGCTGTTGGCTTCTGGTTGCATCGACAACTTGAGGAAAGAAAGAAAAACAAACTCAAGCAGAAACTCTTCAAGAGGAATGGTGGTCTCCTATTGCAACAACAAATCACTTCAAGTGGTAAAGGAAGTGTTGAGAAAACAAAACTCTATACCATAGAAGAGTTGGAAAAGGCAACAGACAACTTCAATGCAAGTCGAGTTCTTGGCAGGGGAGGTCATGGGACAGTGTATAAAGGGATGCTATTGGATGGAAGCATAGTAGCCATTAAGAAGTCAATCATAGTTGACGAGAGGCAAGTAGTTACGTTTGTCAATGAAGTTTTCATTCTTTCACAGATTAACCATAGACACATAGTGAAGTTGTTAGGTTGCTGTCTAGAGAGCGAAGTTCCTTTACTGGTTTATGAATATGTCTCCAATAGCACTCTCTCTCACCATCTCCATGATAGGAACTGTGAATCAAAATTATCTTGGGAAAAGCGCTTGCGAATTGCAGATGAAATTGCAGGAGCCCTTGCTTATTTACATACATATGCTTCTCCGGCTATCCTTCATAGGGATATCAAGTCTAGTAATATACTGTTAGATGAGCACTTTAGGGCTGTGGTTTCTGACTTTGGACTTTCAAGGTCAATAACCCATGAAAAAACACACTTGACCACACTAGTGCAGGGCACATTTGGTTACTTGGATCCAGGGTATTTTCGATCAGGCCAATTCACGGATAAGAGTGATGTATATGCCTTCGGGGTAGTGCTTGCTGAACTTTTAACAGGCGAAAAAGTAATTTGTTCTAGTAGATCTGAAGCAAGTCTAGCAACTCACTTTAGATTGGCAATGAAACAGAATTACCTGTTCGAAATTCTAGACAAGGTAATCCTGGATGATGGTCAGAAAGAGGAGATTCTTGCTGTTGCTAGGCTTGCTAAGATATGCCTGAAGTTGGGAGGGAAGAAAAGGCCAACCATGAAAGAAATAGCAGCAGACCTCGACCAATTAAGGAGGACTACGGAGCAGCCATCACTTCAACGGACTTGCCAGGACAACTGCTCTCTGCAGCTGGATATCAAAAGGTTTGTGAAACAAATTCATGTATGA 4503 42.88 MALQVIQVHLVTIIISIISLVFSLKETKASTAKPGCPETCGNLAIVYPFGIGEGCYLDKRFEITCNNSSNPHPVLRLDQKKEAEVLDMSLEHVRIRDWTSPLCYANNALEGKSYSQFTLAPPMEPFSYSHTENKLIGIGCDIFAYIGDFHSTNSSIKNFISGCVSICNGQGWSWLDTNYSCSGIGCCQTTFPYDLPNFDVRVGNMSIWQEAKDWSSNQCCIVLIAENNFSGFHQFDISFSNQNMKYFYPAVLKWEIGNKSCHETQKRGDYACGRNSHCINSKKGSGYRCLCNPGYRGNPYLPDGCIDVDECMESNNTLCQKGAVCTNKNGSYYCDCPPGYYRDDDKPEYECVRNKGKLKPALLVSSGITFSQCLPHVHPLLALEFVVNYVPLWLIHAGIVVTLVLLILPSIGFWLNQELEKRKKSKLKQMSFKKNGGLLMQQQISSSSIGSSVEKTKLYTIGELEKATDNFNAGRVLGKGGRGKVYKGMLLDGSIVAIKKSIVVDERQVVEFINEVFILSQINHRHIVKLLGCCLESEVPLLVYEYISNNTLSHHLHNEDHASTLSWEKRLRIADEIAGALAYLHSYASTAILHRDIKSRNILLDENFRAVVSDFGLSRLIAHEKTHLSTLVQGTFGYLDPEYFRSGQFTDKSDVYGFGMILAELLTGEKVICSSRSEESLAIHFRLAMKQNCLFEILDKVIVNEGQKKEILAVAKIAKRCLKLSGKKRPAMKEIAADLHQLRTMKQPSLQQTCQDNCSVSERYSISSASTIILDHPVTIIILLLFSSKETAASMAKPGCQETCGNVGIVYPFGIGRGCYHDKNFEVSCAYSSNPPRPSLVVLQVEVLKTSPDNVRICDWTVAACYFDYTSQAASAFTPMEPYSYSHAENKFIGIGCDIGAYIGELNRTSRSLTRYAGGCVSVCHIPGGQAWSNRTSCSGIRCCQTTFSNDLSNVDLWLTNMSMWSKAMAGSNSNPCSFAIIAEKNFSDFDRFDTTLSGENKTYFYPAILNWAIGNKSCQEARKRSHYACGSNSRCVDSDQGSGYKCRCSQGYRGNPYLQDGCIDINECMDPNNTLCKKGAVCINTYGGYYCACPPGYHSHDSQPEHGCVRDKVKLKAAILVTSGIGIAVVLLILLAVGFWLHRQLEERKKNKLKQKLFKRNGGLLLQQQITSSGKGSVEKTKLYTIEELEKATDNFNASRVLGRGGHGTVYKGMLLDGSIVAIKKSIIVDERQVVTFVNEVFILSQINHRHIVKLLGCCLESEVPLLVYEYVSNSTLSHHLHDRNCESKLSWEKRLRIADEIAGALAYLHTYASPAILHRDIKSSNILLDEHFRAVVSDFGLSRSITHEKTHLTTLVQGTFGYLDPGYFRSGQFTDKSDVYAFGVVLAELLTGEKVICSSRSEASLATHFRLAMKQNYLFEILDKVILDDGQKEEILAVARLAKICLKLGGKKRPTMKEIAADLDQLRRTTEQPSLQRTCQDNCSLQLDIKRFVKQIHV* 1501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9059784 9071919 + Vvi10g562 Vvi10g562 771161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g562 1500 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 325 336 IPR000152 -
Vvi10g562 1500 SUPERFAMILY EGF/Laminin 1064 1103 - -
Vvi10g562 1500 Gene3D Laminin 310 353 - -
Vvi10g562 1500 SMART egf_5 260 306 IPR000742 -
Vvi10g562 1500 SMART egf_5 310 352 IPR000742 -
Vvi10g562 1500 SMART egf_5 1018 1064 IPR000742 -
Vvi10g562 1500 SMART egf_5 1068 1110 IPR000742 -
Vvi10g562 1500 SUPERFAMILY EGF/Laminin 306 346 - -
Vvi10g562 1500 ProSitePatterns Protein kinases ATP-binding region signature. 1203 1226 IPR017441 GO:0005524
Vvi10g562 1500 ProSitePatterns Calcium-binding EGF-like domain signature. 307 334 IPR018097 GO:0005509
Vvi10g562 1500 Pfam Calcium-binding EGF domain 307 345 IPR001881 GO:0005509
Vvi10g562 1500 Pfam Calcium-binding EGF domain 1065 1104 IPR001881 GO:0005509
Vvi10g562 1500 Gene3D Phosphorylase Kinase; domain 1 434 546 - -
Vvi10g562 1500 SMART serkin_6 1197 1468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g562 1500 SMART serkin_6 471 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g562 1500 Pfam Protein kinase domain 472 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g562 1500 Pfam Protein kinase domain 1198 1462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g562 1500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1318 1330 IPR008271 GO:0004672|GO:0006468
Vvi10g562 1500 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 1083 1094 IPR000152 -
Vvi10g562 1500 Gene3D Phosphorylase Kinase; domain 1 1168 1272 - -
Vvi10g562 1500 ProSiteProfiles EGF-like domain profile. 1065 1104 IPR000742 -
Vvi10g562 1500 CDD EGF_CA 307 341 - -
Vvi10g562 1500 SUPERFAMILY Protein kinase-like (PK-like) 457 764 IPR011009 -
Vvi10g562 1500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 592 604 IPR008271 GO:0004672|GO:0006468
Vvi10g562 1500 Pfam Wall-associated receptor kinase galacturonan-binding 36 94 IPR025287 GO:0030247
Vvi10g562 1500 Pfam Wall-associated receptor kinase galacturonan-binding 800 854 IPR025287 GO:0030247
Vvi10g562 1500 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 793 1488 IPR045274 GO:0007166
Vvi10g562 1500 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 762 IPR045274 GO:0007166
Vvi10g562 1500 CDD STKc_IRAK 1203 1468 - -
Vvi10g562 1500 SMART egfca_6 261 306 IPR001881 GO:0005509
Vvi10g562 1500 SMART egfca_6 1065 1110 IPR001881 GO:0005509
Vvi10g562 1500 SMART egfca_6 307 352 IPR001881 GO:0005509
Vvi10g562 1500 ProSiteProfiles EGF-like domain profile. 307 348 IPR000742 -
Vvi10g562 1500 ProSiteProfiles Protein kinase domain profile. 471 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g562 1500 SUPERFAMILY Protein kinase-like (PK-like) 1181 1465 IPR011009 -
Vvi10g562 1500 ProSiteProfiles Protein kinase domain profile. 1197 1477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g562 1500 CDD EGF_CA 272 297 - -
Vvi10g562 1500 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 793 1488 - -
Vvi10g562 1500 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 29 762 - -
Vvi10g562 1500 Gene3D Laminin 1068 1107 - -
Vvi10g562 1500 CDD STKc_IRAK 477 742 - -
Vvi10g562 1500 Gene3D Transferase(Phosphotransferase) domain 1 1273 1492 - -
Vvi10g562 1500 Gene3D Transferase(Phosphotransferase) domain 1 547 767 - -
Vvi10g562 1500 ProSitePatterns Calcium-binding EGF-like domain signature. 1065 1092 IPR018097 GO:0005509
Vvi10g562 1500 Gene3D Laminin 1017 1067 - -
Vvi10g562 1500 Gene3D Laminin 259 309 - -
Vvi10g562 1500 CDD EGF_CA 1065 1099 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76004 PF00069 Pkinase 6.80E-44 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g562 - - vvi:100254262 1464.9