Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi10g571	ATGTTTTCAAAAGATATTAATGAGTGCGAGGACCCAAACAAAATTTTTTGCCACGAGATAGCTCTTTGCACTAACGTCCCTGGCAGTTACTCATGCACTTGTCCAACTAGTTACCATGGAGATGGAAAGAAACAAGGAACTGGGTGCATACGTGCGGGGATTTCTGTTGTTTCCTTGATCCTAATTGCTACAGGCTTAAGGTTATACCGAGGACTTAAGGAAAGAGAGAAAAAGAAAATAAAACAGAAGTTCTTCAAGAAGAATGGTGGTCTGCTATTGCAACAGCAAATTTCTTCAAGCAAAGAAAGTGTAGAAAAAACAAAACTCTATTCGGTAGAAGAGTTGGAGAGAGCAACAGATGGCTTCAATTCGAGTCGAGTCATTGGTAAGGGAGGCCTTGGCACAGTATACAAAGGAATGTTGTCGGATGGAAGCATTGTAGCCATTAAGAAATCCAATACCGTTGATGAAAAGCAATTGGACCAGTTCGTTAACGAAGTTTTCATTCTTTCACAGATCAACCATAGGCACATAGTAAGATTGCTAGGTTGTTGTCTGGAGACTGAAGTACCTTTGCTGGTTTATGAATACGTCTCCAATGGCACCCTCTTCCACCATCTCCATGATGAGGGCCATGCATCTACATTATCTTGGAAAGACCGGCTGCGAATTGGGAGTGAAATTGCCGGAGCCCTGGCATATTTGCACTCATATGCTTCTATAGCCATCTGTCACAGGGATATCAAGTCTAGGAACATATTGTTGGATGAAAACCTCCGGGCAGTAGTTTCTGACTTTGGACTTTCAAGATCAATACCCCTTGACAAAACTCACTTAACTGCATTAGTACAAGGGACATTTGGTTACTTAGATCCTGATTATTTTCATTCAGGTCAATTTACAGATAAAAGTGATGTGTATGCCTTCGGCGTAGTCCTTGCTGAACTTCTGACAGGAGAGCAAGCCATTTCCTCGGATAGATCTGAACAAGGTCTAGCAAATCATTTTAGATCAGCAATGAAACAAAATCGTCTGTTTGATATTCTTGATAACCAAGTTGTAAATGAAGGACAGAAGGAGGAGATTTTCGCCGTTGCTAAGCTTACTAAGAGATGCCTAAAGTTGAATGGGAAAAAAAGTACAACATATGAAACCGGGTGTGCATCGCTTTGTCCAGACAATAACATCACTGTTGGTTTTTCTTCTTCCGCTTGCACTGGCATTGGTTGCTGCAGGACTGATCTCCAAACGGATATGACGTGGTTTTATCTGCGGATTCGCAGCATCAACATGCTCACACCAGCCTGGAACTATGAACCATGTAGCCTTGCTTTCATTGCGGAGAGGAACTTCTCCATAAGTGAAAATTTTGACCTCTCTAGTAAATTTGACAGGAATTTGTATTTTGTTCCAGCAATACTTGACTGGTCAGTTGGGAACGGCCAGGGGTATAAGTGTAACTGCTCTGAAGGCTACCAAGGGAATGCCTACCTTGCAAATGGCTGCCAAGATATTAATGAGTGCGAGGACCCAAACAAAATTTTTTGCCACGAGATAGCTCTTTGCACTAACGTCCCTGGCAGTTACTCATGCACTTGTCCAACTGGTTACCATGGAGATGGAAAGAAACAAGGAACTGGGTGCATACGTGGCAAGCATAAACATTTGCTAGCACTGGTATTTTCTTTAGGTGCGGGGATTTCTGTTGTTTCCTTGATCCTAATTGCTACAGGCTTAAGGTTATACCGAGGACTTAAGGAAAGAGAGAAAAAGAAAATAAAACAGAAGTTCTTCAAGAAGAATGGTGGTCTGCTATTGCAACAGCAAATTTCTTCAAGCAAAGAAAGTGTAGAAAAAACAAAACTCTATTCGGTAGAAGAGTTGGAGAGAGCAACAGATGGCTTCAATTCGAGTCGAGTCATTGGTAAGGGAGGCCTTGGCACAGTATACAAAGGAATGTTGTCGGATGGAAGCATTGTAGCCATTAAGAAATCCAATACCGTTGATGAAAAGCAATTGGACCAGTTCGTTAACGAAGTTTTCATTCTTTCACAGATCAACCATAGGCACATAGTAAGATTGCTAGGTTGTTGTCTGGAGACTGAAGGCCATGCATCTACATTATCTTGGAAAGACCGGCTGCGAATTGGGAGTGAAATTGCCGGAGCCCTGGCATATTTGCACTCATATGCTTCTATAGCCATCTGTCACAGGGATATCAAGTCTAGGAACATATTATTACATGCAACATACAAACTGCGCATCAATGATATTGCTTATCGTAGCTGTTTTAACAACCAATCAGGGAAGACTGATTCATCATATGTATCATATAATAGAACTCATCATTTCAGTTACTCCTTCACTCACAATAAGTTCATAGCCATTGGGTGTGACATATTTGCTTATATCACTGGGCACAACAGTACAGCATATGCAACCGGGTGTGCTTCGCTTTGTAATACTGGTAATGACATCACTGCTGGTTTTTCCTCTTCTGCTTGCTCAGGCATTGGTTGCTGCAGGACTTATCTCCAAACAGATATTGCATCTTTTTATCTCCGGATTCGCAGCATCAACATGATCACACCAACCTGGTCTTCTGAGCCATGTGGCCTTGCTTTCATAGCAGAGAGGAACTTCTCTATACGTGAACATTTTAACCTCTCTAGTAAATTTGACAAGAATTTGTATTTTGTCCCAGCAGTACTTGACTGGTCAGTTGGGGAAGTCTCTTGCCATGAAGCTATCAGAAGAAAAAACTATGCATGCGGCCAGAACACTTATTGCAACAACTCCATCCAGGGTCGGGGGTATAATTGTCACTGCCTTAACGGTTACCAAGGGAACCCCTACCTTGCAAATGGCTGCCAAGATATTAACGAATGCAACGACCCAAAACAAAATGCTTGCCACAAGATAGCTATTTGCAGTAACATCCCTGGCAGTTACTCATGCACTTGCCCAGCTGGTTACCATGGAGATGGCAAGACAAATGGAACTGGGTGCATACCTGGCAAGCGTAAACATTTGCTAGCACTGGTATTTTCTTTAGGTGTGGGGATTACTGTTGTTCCCTTGATCCTAATTGCTACGGGCCTATGGTTATACCGAAGACTTAAGGAAAGAGAGAAAAAGAAAATAAAACAGGAGTTCTTCAAGAAGAATGGTGGTCTGCTATTGCAACAGCAAATTTCTTCAAGCAAAGAAAGCGTAGAAAAAACAAAACTATCTGAACAAGGTCTAGCAAATCATTTTAGATCAGCAATGAAACAAAATCGTCTCTTTGAAATTCTTGATAACCAAGTTGTAAATGAAGGACAGAAGGAGGAGATTTTCGCCGTTGCTAAGCTTGCTAAGAGATGCCTAAAGTTGAATGGGAAAAAAAGGCCAACCATGAAACAAATTGATATAGACCTCCAACAATTGGGCAGATTTCAGGAGCAGTTGTCTTTTCAGAAGACAAAGATTCAAGAGCCTTCGTTGCAGCAGCAAACATGCCAGGACTACTTCACAGTAACAGGAAGTATGTTTATATATGCTATTGACTTCTGGAATAATGATGTAATGAATGGCTCCGAACTTTGTTTTACTTTCTTTAATTTGTTCCAGTATGGTACACATATTATTAGGGTCCAACTGGGGTTGAGGCTGCTTGACAATCAATCAAGGTCAACCTTTATATACACATCAAGTTCATTTTCCAAACCCAACAATTCAATTCAATCTAAGCTGCCTAAACTATTTTTTTTTAAATCTTGA	3762	41.17	MFSKDINECEDPNKIFCHEIALCTNVPGSYSCTCPTSYHGDGKKQGTGCIRAGISVVSLILIATGLRLYRGLKEREKKKIKQKFFKKNGGLLLQQQISSSKESVEKTKLYSVEELERATDGFNSSRVIGKGGLGTVYKGMLSDGSIVAIKKSNTVDEKQLDQFVNEVFILSQINHRHIVRLLGCCLETEVPLLVYEYVSNGTLFHHLHDEGHASTLSWKDRLRIGSEIAGALAYLHSYASIAICHRDIKSRNILLDENLRAVVSDFGLSRSIPLDKTHLTALVQGTFGYLDPDYFHSGQFTDKSDVYAFGVVLAELLTGEQAISSDRSEQGLANHFRSAMKQNRLFDILDNQVVNEGQKEEIFAVAKLTKRCLKLNGKKSTTYETGCASLCPDNNITVGFSSSACTGIGCCRTDLQTDMTWFYLRIRSINMLTPAWNYEPCSLAFIAERNFSISENFDLSSKFDRNLYFVPAILDWSVGNGQGYKCNCSEGYQGNAYLANGCQDINECEDPNKIFCHEIALCTNVPGSYSCTCPTGYHGDGKKQGTGCIRGKHKHLLALVFSLGAGISVVSLILIATGLRLYRGLKEREKKKIKQKFFKKNGGLLLQQQISSSKESVEKTKLYSVEELERATDGFNSSRVIGKGGLGTVYKGMLSDGSIVAIKKSNTVDEKQLDQFVNEVFILSQINHRHIVRLLGCCLETEGHASTLSWKDRLRIGSEIAGALAYLHSYASIAICHRDIKSRNILLHATYKLRINDIAYRSCFNNQSGKTDSSYVSYNRTHHFSYSFTHNKFIAIGCDIFAYITGHNSTAYATGCASLCNTGNDITAGFSSSACSGIGCCRTYLQTDIASFYLRIRSINMITPTWSSEPCGLAFIAERNFSIREHFNLSSKFDKNLYFVPAVLDWSVGEVSCHEAIRRKNYACGQNTYCNNSIQGRGYNCHCLNGYQGNPYLANGCQDINECNDPKQNACHKIAICSNIPGSYSCTCPAGYHGDGKTNGTGCIPGKRKHLLALVFSLGVGITVVPLILIATGLWLYRRLKEREKKKIKQEFFKKNGGLLLQQQISSSKESVEKTKLSEQGLANHFRSAMKQNRLFEILDNQVVNEGQKEEIFAVAKLAKRCLKLNGKKRPTMKQIDIDLQQLGRFQEQLSFQKTKIQEPSLQQQTCQDYFTVTGSMFIYAIDFWNNDVMNGSELCFTFFNLFQYGTHIIRVQLGLRLLDNQSRSTFIYTSSSFSKPNNSIQSKLPKLFFFKS*	1254

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
10	9357355	9407963	+	Vvi10g571	Vvi10g571	771170

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vvi10g571	1253	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	735	747	IPR008271	GO:0004672\|GO:0006468
Vvi10g571	1253	ProSitePatterns	Aspartic acid and asparagine hydroxylation site.	977	988	IPR000152	-
Vvi10g571	1253	CDD	EGF_CA	504	540	-	-
Vvi10g571	1253	ProSitePatterns	Calcium-binding EGF-like domain signature.	5	32	IPR018097	GO:0005509
Vvi10g571	1253	ProSiteProfiles	EGF-like domain profile.	5	41	IPR000742	-
Vvi10g571	1253	CDD	EGF_CA	959	995	-	-
Vvi10g571	1253	ProSiteProfiles	EGF-like domain profile.	959	998	IPR000742	-
Vvi10g571	1253	SMART	egf_5	507	549	IPR000742	-
Vvi10g571	1253	SMART	egf_5	962	1004	IPR000742	-
Vvi10g571	1253	SMART	egf_5	912	958	IPR000742	-
Vvi10g571	1253	SMART	egf_5	8	50	IPR000742	-
Vvi10g571	1253	PANTHER	SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	762	1077	-	-
Vvi10g571	1253	PANTHER	SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	18	382	-	-
Vvi10g571	1253	PANTHER	SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	381	480	-	-
Vvi10g571	1253	PANTHER	SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	481	757	-	-
Vvi10g571	1253	PANTHER	SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	1077	1165	-	-
Vvi10g571	1253	ProSiteProfiles	EGF-like domain profile.	504	540	IPR000742	-
Vvi10g571	1253	CDD	EGF_CA	5	41	-	-
Vvi10g571	1253	Gene3D	Phosphorylase Kinase; domain 1	599	700	-	-
Vvi10g571	1253	Gene3D	Phosphorylase Kinase; domain 1	86	197	-	-
Vvi10g571	1253	ProSitePatterns	Calcium-binding EGF-like domain signature.	504	531	IPR018097	GO:0005509
Vvi10g571	1253	ProSitePatterns	Calcium-binding EGF-like domain signature.	959	986	IPR018097	GO:0005509
Vvi10g571	1253	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	32	-	-
Vvi10g571	1253	Gene3D	Laminin	1	45	-	-
Vvi10g571	1253	Pfam	EGF domain	508	542	IPR024731	-
Vvi10g571	1253	Pfam	EGF domain	9	43	IPR024731	-
Vvi10g571	1253	SMART	egfca_6	5	50	IPR001881	GO:0005509
Vvi10g571	1253	SMART	egfca_6	504	549	IPR001881	GO:0005509
Vvi10g571	1253	SMART	egfca_6	959	1004	IPR001881	GO:0005509
Vvi10g571	1253	SUPERFAMILY	EGF/Laminin	5	43	-	-
Vvi10g571	1253	ProSiteProfiles	Protein kinase domain profile.	122	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi10g571	1253	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	18	382	IPR045274	GO:0007166
Vvi10g571	1253	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	481	757	IPR045274	GO:0007166
Vvi10g571	1253	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	762	1077	IPR045274	GO:0007166
Vvi10g571	1253	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	1077	1165	IPR045274	GO:0007166
Vvi10g571	1253	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	381	480	IPR045274	GO:0007166
Vvi10g571	1253	ProSiteProfiles	Protein kinase domain profile.	635	889	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi10g571	1253	Gene3D	Transferase(Phosphotransferase) domain 1	701	791	-	-
Vvi10g571	1253	SMART	serkin_6	122	383	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi10g571	1253	ProSitePatterns	Aspartic acid and asparagine hydroxylation site.	23	34	IPR000152	-
Vvi10g571	1253	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	243	255	IPR008271	GO:0004672\|GO:0006468
Vvi10g571	1253	ProSitePatterns	Aspartic acid and asparagine hydroxylation site.	522	533	IPR000152	-
Vvi10g571	1253	Gene3D	Transferase(Phosphotransferase) domain 1	1060	1168	-	-
Vvi10g571	1253	Gene3D	Transferase(Phosphotransferase) domain 1	198	395	-	-
Vvi10g571	1253	SUPERFAMILY	EGF/Laminin	958	997	-	-
Vvi10g571	1253	SUPERFAMILY	EGF/Laminin	503	542	-	-
Vvi10g571	1253	Pfam	Calcium-binding EGF domain	959	1003	IPR001881	GO:0005509
Vvi10g571	1253	SUPERFAMILY	Protein kinase-like (PK-like)	613	758	IPR011009	-
Vvi10g571	1253	Gene3D	Laminin	912	962	-	-
Vvi10g571	1253	Pfam	Protein kinase domain	636	770	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi10g571	1253	Pfam	Protein kinase domain	123	384	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi10g571	1253	SUPERFAMILY	Protein kinase-like (PK-like)	100	378	IPR011009	-
Vvi10g571	1253	Gene3D	Laminin	477	543	-	-
Vvi10g571	1253	Gene3D	Laminin	963	1004	-	-

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	76007	PF00069	Pkinase	1.60E-45	CL0016	Vvi	PK

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi10g571	-		-	vvi:100267910	724.931