Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g572 ATGCTTCTGCAATTGCTAGTATCAGTTCATCTTATCACAATCATCATCTTCTTTGTATTTATACCACAGGAAGCAGGGGCATCTCTGACCAAGCCTGGCTGCCCAGAGAAATGTGGGAACGTTACCATTCCATATCCATTTGGCATGGGAAAAGGCTGTTACCTTCATAGAGATTTTGAGATTACATGCAACATGTCCTCCAATCCGCCTCTTCCACTTCTCCAAGAAGTTCAACTTTTGCAGATATCAGAAGACAATCTGCGCATCAATGATATTGCTTATCGTAGCTGTTTTAACAACCAATCAGGGAAGACTGATTCATCATATATATTATACAATAGAACTCATCATTTCAGTTACTCCTACACTCACAATACGTTCGTAGCCATTGGGTGTGACATATTTGCTTATATCACTGGGTACAACAGTACAGCATATGCAACTGGGTGTGCATCGCTTTGTAATACTGATAATGACATCGCTGCTGGTTTTTCCTCTTCTGCTTGCTCTGGCATTGGTTGCTGCAGGACTTATCTCCAAACAGATATTGCACACTTTTATCTCCGGATTCGCAGCATCAACATGATCACACCAACCTGGTCTTCTGAGCCATGTGGCCTTGCTTTCATAGCAGAGAGGAACTTCTCTACACTTGAACATTTTAACCTCTCTAGTAAATTTGACAAGAAATTGTATTTTGTCCCAGCAGTACTTGACTGGTCAGTTGGGGAAGTCTCTTGCCATGAAGCTATCAGAAGAAAAAACTATGCATGTGGCCAGAACACTTACTGCAACAACTCCATCCAGGGTCGGGGGTATAATTGTCACTGCCTTAACGGCTACCAAGGGAATCCCTACCTTGCAAATGGCTGCCAAGGTACAGTTCTTCTACTATTCAACATTTTATATTTACTTTTTTGCCACTCCCACAAGCTTATGAATTTCTTACTAATATTCTTTTTTTCTTTTGTGCTCTCAAAAGATATTAATGAGTGCAACGACCCAAACCAAAATGTTTGCCACAAGATAGCTCTTTGCAGTAACATCCCTGGCAGTTACTCATGCAATTGCCCATCTGGTTACCATGGAGATGGCAGGAAACATGGAACTGGGTGCATACGTGGCAAGCGTAAACATTTGCTACTACTGGTATTTTCTTTAGGCGTGGGGATTATTGTTGTTCCCTTGATCCTAATTTCTACGGGCTTAAGGTTATACCGAGGAGTTGAGGAAAGAGAGAAAAAGAAAATAAAACAGGAGTTCTTCAAAAAGAACGGTGGTCTGCTATTGCAACAGCAAATTTCTTCAAGCAAAGAAAGCGTAGAAAAAACAAAACTCTATTCGGTAGAAGAGTTGGAGAGAGCAACAGATGGCTTCAATTCAGGTCGAGTCATCGGTAAGGGAGGCCTTGGCACAGTATACAAAGGGATGCTGTCAAATGGAAGCATTGTAGCCATTAAGAAGTCCAATACTGTTGATGAAAAGGAATTGGACCAGTTCGTCAATGAAGTTTTCATTCTTTCACAGATCAACCATAGGCACATAGTAAGATTGTTAGGTTGTTGTCTGGAGACTGAAGTACCTTTGCTGATTTATGAATATGTCTCCAATGGCACCCTTTTCCACCATCTTCATGATGAGGGCCACGCATCTACATTATCTTGGAAAAACCGGCTGCGAATTGGGAGTGAAATTGCCGGAGCCCTGGCTTATTTGCACTCATATGCTTCTATTGCCATCTGTCACAGGGATATCAAATCTAGTAACATATTGTTGGATGAAAACCTCCGGGCAGTAGTTTCTGACTTTGGACTTTCAAGGTCAATACCCCTTGACAAAACTCACTTAACTGCGTTGGTACAAGGGACATTTGGTTACTTGGATCCGGATTATTTTCATTCAGGTCAATTTACAGATAAAAGTGATGTGTATGCCTTCGGTGTAGTCCTTGCTGAACTTCTGACAGGAGAACAAGCCATTTCCTCGGATAGATCTGAACAAGGTCTAGCTAATCATTTTAGATCAGCAATGAAACAAAATCGCCTGTTTGAAATTCTTGATAACCAAGTTGTAAATGAAGGACAGAAGGAGGAGATTTTCGCCATTGCTAAGCTTGCTAAGAGATGCCTAAAGTTGAATGGGAAAAAAAGGCCAACCATGAAACAAGTTGATATAGACCTCCAACAACTGGGCAGATTTCAGGGGTTGTCTTTGCAGAAGACATGGATTCAAGAACCTTCCTTGCAGCAGCAAACATGCGAGGACTACTGCACGGTAAGTGAAACATCCCATTCCTACACATTTGATATTAATGAGTGCAACGACCCAAACAAAAATTTTTGCCACAAGATGGCTGTTTGCAGTAACATCCCTGGCAGTTACTCATGCACTTGCCCAGCTGGTTACCATGGAGATGGCAAGAAAAATGGAACTGGGTGCATACGTGGCAAGCATGGACATTTGCTACCACTGGTATTTTCTTTAGGTGTGGGGATTACTGTTGTTCCCTTGATCCTAATTGCTACAGGCCTAAGGTTATACCGAGGACTTGAAAAAAGAGAGAAAAAGAAAAAAAACAGAACTTCTTCAAGAAGAACGGCGGTCTGCTATTGCAACAGCAAATTTCTTCAAGCAAAGAAAGTGAATACAGTATGGCAGCTTAAAGTTTCGGTTGAATACTAA 2682 41.5 MLLQLLVSVHLITIIIFFVFIPQEAGASLTKPGCPEKCGNVTIPYPFGMGKGCYLHRDFEITCNMSSNPPLPLLQEVQLLQISEDNLRINDIAYRSCFNNQSGKTDSSYILYNRTHHFSYSYTHNTFVAIGCDIFAYITGYNSTAYATGCASLCNTDNDIAAGFSSSACSGIGCCRTYLQTDIAHFYLRIRSINMITPTWSSEPCGLAFIAERNFSTLEHFNLSSKFDKKLYFVPAVLDWSVGEVSCHEAIRRKNYACGQNTYCNNSIQGRGYNCHCLNGYQGNPYLANGCQGTVLLLFNILYLLFCHSHKLMNFLLIFFFSFVLSKDINECNDPNQNVCHKIALCSNIPGSYSCNCPSGYHGDGRKHGTGCIRGKRKHLLLLVFSLGVGIIVVPLILISTGLRLYRGVEEREKKKIKQEFFKKNGGLLLQQQISSSKESVEKTKLYSVEELERATDGFNSGRVIGKGGLGTVYKGMLSNGSIVAIKKSNTVDEKELDQFVNEVFILSQINHRHIVRLLGCCLETEVPLLIYEYVSNGTLFHHLHDEGHASTLSWKNRLRIGSEIAGALAYLHSYASIAICHRDIKSSNILLDENLRAVVSDFGLSRSIPLDKTHLTALVQGTFGYLDPDYFHSGQFTDKSDVYAFGVVLAELLTGEQAISSDRSEQGLANHFRSAMKQNRLFEILDNQVVNEGQKEEIFAIAKLAKRCLKLNGKKRPTMKQVDIDLQQLGRFQGLSLQKTWIQEPSLQQQTCEDYCTVSETSHSYTFDINECNDPNKNFCHKMAVCSNIPGSYSCTCPAGYHGDGKKNGTGCIRGKHGHLLPLVFSLGVGITVVPLILIATGLRLYRGLEKREKKKKNRTSSRRTAVCYCNSKFLQAKKVNTVWQLKVSVEY* 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9476331 9511615 + Vvi10g572 Vvi10g572 771171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g572 893 CDD STKc_IRAK 465 723 - -
Vvi10g572 893 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 787 798 IPR000152 -
Vvi10g572 893 SUPERFAMILY Protein kinase-like (PK-like) 437 724 IPR011009 -
Vvi10g572 893 CDD EGF_CA 769 805 - -
Vvi10g572 893 CDD EGF_CA 328 364 - -
Vvi10g572 893 ProSitePatterns Calcium-binding EGF-like domain signature. 769 796 IPR018097 GO:0005509
Vvi10g572 893 ProSiteProfiles EGF-like domain profile. 328 364 IPR000742 -
Vvi10g572 893 ProSiteProfiles EGF-like domain profile. 769 805 IPR000742 -
Vvi10g572 893 ProSiteProfiles Protein kinase domain profile. 459 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g572 893 Gene3D Phosphorylase Kinase; domain 1 424 534 - -
Vvi10g572 893 SUPERFAMILY EGF/Laminin 769 807 - -
Vvi10g572 893 SMART egf_5 772 814 IPR000742 -
Vvi10g572 893 SMART egf_5 331 373 IPR000742 -
Vvi10g572 893 SMART egf_5 246 292 IPR000742 -
Vvi10g572 893 Gene3D Transferase(Phosphotransferase) domain 1 535 742 - -
Vvi10g572 893 SUPERFAMILY EGF/Laminin 328 367 - -
Vvi10g572 893 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 27 751 - -
Vvi10g572 893 ProSitePatterns Serine/Threonine protein kinases active-site signature. 580 592 IPR008271 GO:0004672|GO:0006468
Vvi10g572 893 ProSitePatterns Calcium-binding EGF-like domain signature. 328 355 IPR018097 GO:0005509
Vvi10g572 893 SMART serkin_6 459 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g572 893 Gene3D Laminin 749 810 - -
Vvi10g572 893 Gene3D Laminin 322 368 - -
Vvi10g572 893 Pfam Calcium-binding EGF domain 769 812 IPR001881 GO:0005509
Vvi10g572 893 Pfam Calcium-binding EGF domain 328 366 IPR001881 GO:0005509
Vvi10g572 893 SMART egfca_6 328 373 IPR001881 GO:0005509
Vvi10g572 893 SMART egfca_6 769 814 IPR001881 GO:0005509
Vvi10g572 893 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 751 IPR045274 GO:0007166
Vvi10g572 893 Pfam Protein kinase domain 460 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g572 893 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 346 357 IPR000152 -
Vvi10g572 893 Pfam Wall-associated receptor kinase galacturonan-binding 34 90 IPR025287 GO:0030247
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76008 PF00069 Pkinase 6.50E-49 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g572 - - vvi:100852951 1455.65