Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g576 ATGCAAACTACGGGATTCAAAAGTGAGACAGAGGACATATGTGGCTATGCATTCATTGCCCAAACCAACTTTCCTGTTTCCTACACAATTTCATCCTCCCGTAAAATTGTCCCAGTCTCGGAGGTCGTCCCAGCTGTGCTTGAATGGACAGTAGGAAATATCTCTTGCCATGAAGCAAAGGGACGAGAAGACTATGCATGTGGCTACAATAGTTCTTGCGTCGACTCAACCCAAGGCTCGGGATATAAGTGTAAATGCCTCATAGGCTACAGGGGGAATCCCTACCTCCCAACTGGCTGCGAAGATGTTGATGAGTGCAAAGAGCCCAAGAACAACATTTGCCACGAGATTGCCCGTTGCGTTAACATTCCTGGCAATTACTCGTGCATTTGCCCAGACGGCTACCATGGAGATGCCACAAAATTCGGAAGTGGCTGCATTCCTGTCAAAGGAAAACTCCCTGTGCCTTTGGTCGTTTCTTTAGGCATCGGAATTGCTGTTGGTCTTCTAATCTTGCTTGCTATTGCCTTTTGGTTGTATAAACGACTTGAAAAAAGAAAGAAAGACATTCTCAAACGGAAGTTCTTTGATGAGAATGGTGGTCGGCTGTTGCGACATATGATGGCCTTAAGCAAAGGAAGTGTTGAGAAAATGAAGCTCTATATTATAGAAGAATTGGAGAAGGCAACCGACAATTTCAATGTTAATCGAATCCTTGGAAAGGGTGGTTTCGGCACAGTATATAAAGGAATGTTACAAGATGGAAGCATTGTAGCTGTGAAGAAATCTGATAAAGTTGATGAAATGCAAGTAGATCAATTCGTCAACGAAGTTTTTATTCTTACCCAAATCGACCATAGCCACATTGTGAAGTTGTTAGGTTGCTGTCTAGAGACTGAAGTTCCTTTGCTGGTTTATGAACATGTCTCCAACGGCACCCTCTCCCACCATCTCCATGACAAGGGTCATTTATCTACATTATCTTGGGAAAACCGCTTGCGAATTGCAAGTGAAATTGCCGATGCACTTGATTATTTGCACTCATATGGCTCTGCAGCTATCTTTCACAGGGATATCAAGTCTAACAATATACTCTTGGATGAAAACCTCAGGGCTATAGTTGCTGACTTTGGAATTTCAAGGCCAGTATCCGCGAAGAAGACTCATTTAACCGCATCAGTACTGCAAGGCACGTATGGCTACTTGGATCCAGAGTACTTCCAAACATGGCAATTTACAAGTAAAAGTGATGTATATGCCTTTGGCGTGCTTCTTGCGGAACTTATTACAGGAGAAAAGGCCATTTGTGCAGACAGAGACAAACAAGGTTTAGCTTCTCATTTTACATCAGCAATGAAAAGCAATGATCTTTTTGAAATTGTGGACCATACTCTAGTGTTGAATGAAGATCAGAAGGAAGAGATTCTTGTTGTTGCTAGGATTGCTGAAAGATGCCTGGAACCGACTGGGGATAAAAGGCCAACAATGAAGGACGTAGCAGGAGGACTCCCAAAATTGAGAAAGATATTCCTGGAGCAGCAGGTAGTTGAATAA 1554 42.92 MQTTGFKSETEDICGYAFIAQTNFPVSYTISSSRKIVPVSEVVPAVLEWTVGNISCHEAKGREDYACGYNSSCVDSTQGSGYKCKCLIGYRGNPYLPTGCEDVDECKEPKNNICHEIARCVNIPGNYSCICPDGYHGDATKFGSGCIPVKGKLPVPLVVSLGIGIAVGLLILLAIAFWLYKRLEKRKKDILKRKFFDENGGRLLRHMMALSKGSVEKMKLYIIEELEKATDNFNVNRILGKGGFGTVYKGMLQDGSIVAVKKSDKVDEMQVDQFVNEVFILTQIDHSHIVKLLGCCLETEVPLLVYEHVSNGTLSHHLHDKGHLSTLSWENRLRIASEIADALDYLHSYGSAAIFHRDIKSNNILLDENLRAIVADFGISRPVSAKKTHLTASVLQGTYGYLDPEYFQTWQFTSKSDVYAFGVLLAELITGEKAICADRDKQGLASHFTSAMKSNDLFEIVDHTLVLNEDQKEEILVVARIAERCLEPTGDKRPTMKDVAGGLPKLRKIFLEQQVVE* 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9709088 9712190 + Vvi10g576 Vvi10g576 771175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g576 517 ProSitePatterns Calcium-binding EGF-like domain signature. 102 129 IPR018097 GO:0005509
Vvi10g576 517 ProSiteProfiles Protein kinase domain profile. 233 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g576 517 Gene3D Phosphorylase Kinase; domain 1 202 308 - -
Vvi10g576 517 Gene3D Transferase(Phosphotransferase) domain 1 309 514 - -
Vvi10g576 517 Pfam Protein kinase domain 234 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g576 517 SUPERFAMILY Growth factor receptor domain 66 148 IPR009030 -
Vvi10g576 517 SMART egfca_6 102 147 IPR001881 GO:0005509
Vvi10g576 517 CDD EGF_CA 102 138 - -
Vvi10g576 517 ProSiteProfiles EGF-like domain profile. 102 141 IPR000742 -
Vvi10g576 517 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 120 131 IPR000152 -
Vvi10g576 517 SMART egf_5 55 101 IPR000742 -
Vvi10g576 517 SMART egf_5 105 147 IPR000742 -
Vvi10g576 517 Gene3D Laminin 105 142 - -
Vvi10g576 517 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 23 512 - -
Vvi10g576 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 354 366 IPR008271 GO:0004672|GO:0006468
Vvi10g576 517 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 512 IPR045274 GO:0007166
Vvi10g576 517 Pfam Calcium-binding EGF domain 102 136 IPR001881 GO:0005509
Vvi10g576 517 ProSitePatterns Protein kinases ATP-binding region signature. 239 262 IPR017441 GO:0005524
Vvi10g576 517 SUPERFAMILY Protein kinase-like (PK-like) 217 500 IPR011009 -
Vvi10g576 517 Gene3D Laminin 55 104 - -
Vvi10g576 517 SMART serkin_6 233 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76010 PF00069 Pkinase 3.80E-49 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g576 - - vvi:100262909 1019.22