Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g618 ATGGATTCTGCAAGGAGCTGGTTTAAAAAATTTCATCCTAAAAAGGATAAAATGAGTTCTAACAAAGAGACAGACAATATGAAGGATTTGTATAAGCCTCCAGTGGATGAGGCTCCTTCAAATTCCACAAAAGAGAAGGTTGCTGCCGCAAAGCATTATATCGAGAATCATTACAAAGCACAAATGAAAAATCTGCAAGACAGAAAGGAGAGACGCTGGGTCTTGGAGAGGAAACTTGCTGATGCTGATGTATCTGAGGAAGAGCAAATCAATCTTCTGAAATATTTTGAGAGAAAGGAGACAGAGTATATGCGTATCCAAAGACATAAGATGGGTGTTGATGACTTTGAACTTTTGACCATTATAGGAAGAGGTGCCTTTGGAGAGGTGAGACTTTGCAGAGAAAAAACTACTGGCCATGTGTATGCCATGAAAAAGCTCAAGAAATCAGAGATGCTTCGGAGGGGCCAGGTGGAACATGTTAAAGCTGAACGGAATCTTCTTGCTGAGGTTGACAGTGCTTGCATTGTCAAGCTTTATTGCTCCTTTCAAGATCAAGAATTTTTATATCTTATAATGGAATATCTTCCGGGGGGTGACATGATGACGTTACTAATGCGCAAGGATACCTTGACTGAGGATGAGGCAAGGTTTTATGTTGGGCAGACAGTCCTTGCCATTGAGTCTATTCACAAGCACAACTACATCCACAGGGATATCAAGCCTGACAATTTATTGCTTGATCGTTATGGCCATATGAAACTTTCAGATTTTGGGTTGTGCAAACCCTTGGACTGTAGTAGTTTTCCCAATCTTAGTGAGAATGACTATGGAGTGGGAAAAAATATCAAACCTACATTAGACAGTGACAAACATTCTAACATGCCTTCTGCACCGAGGCGGACTCAGCAGGAACAATTATTACACTGGCAAAAGAACAGAAGAATGTTGGCTTATTCAACAGTTGGGACTCCCGACTACATTGCCCCAGAAGTACTGCTGAAGAAAGGATATGGAATGGAGTGTGATTGGTGGTCTCTTGGGGCAATTATGTATGAGATGCTTGTGGGATATCCACCTTTTTATTCTGAGGAACCAATGTCAACATGCAGAAAGATAGTAAATTGGAGAACACACTTGAAATTCCCTGAAGAGGCGAAGCTTTCTGCAGAGGCTAAAGATCTCATAAGCAGACTCCTGTGCAATGTGGCACACAGGCTAGGGACTAAAGGAGCACATGAAATCAAAGCACACCCATGGTTTAAAGGTATCCAATGGGAAAGCTTATATCAGATGGAAGCTGCTTTTGTACCAGAGGTTAATGATGAGTTAGACACACAGAACTTTGAGAAATTTGAAGAGTTGGGGACTACAGCTCAATCGTCATCAAGGTCAGGTCCCTGGAAGAAGATGCTTCCATCCAAGGATGTAAATTTCGTTGGTTATACATACAAGAATTTTGAAATTGTCAACGAGCATCATGTGCCTGGCATTGCTGAGTTAAAGAAAAAGACGAATAAACCGAGGAGGCCATCTATCAAGACACTGTTTGATACCCCTGATCCTCCTGATCAGCCTGTTCAGGGAAGCTTTATTAACCTTTTGCCTACTCAAGTGGAGGTCTCTGAAAGCCCTGAGCAATCACCTCAATCTAACAGACCGCCGAAATACCCACAAAGACCTATGCAAAGATGA 1695 41.89 MDSARSWFKKFHPKKDKMSSNKETDNMKDLYKPPVDEAPSNSTKEKVAAAKHYIENHYKAQMKNLQDRKERRWVLERKLADADVSEEEQINLLKYFERKETEYMRIQRHKMGVDDFELLTIIGRGAFGEVRLCREKTTGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSACIVKLYCSFQDQEFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGQTVLAIESIHKHNYIHRDIKPDNLLLDRYGHMKLSDFGLCKPLDCSSFPNLSENDYGVGKNIKPTLDSDKHSNMPSAPRRTQQEQLLHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSEEPMSTCRKIVNWRTHLKFPEEAKLSAEAKDLISRLLCNVAHRLGTKGAHEIKAHPWFKGIQWESLYQMEAAFVPEVNDELDTQNFEKFEELGTTAQSSSRSGPWKKMLPSKDVNFVGYTYKNFEIVNEHHVPGIAELKKKTNKPRRPSIKTLFDTPDPPDQPVQGSFINLLPTQVEVSESPEQSPQSNRPPKYPQRPMQR* 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10675635 10698700 + Vvi10g618 Vvi10g618 771217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g618 564 MobiDBLite consensus disorder prediction 500 564 - -
Vvi10g618 564 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Vvi10g618 564 SMART pkinase_C_6 422 486 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi10g618 564 Pfam Protein kinase C terminal domain 440 484 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vvi10g618 564 MobiDBLite consensus disorder prediction 530 550 - -
Vvi10g618 564 MobiDBLite consensus disorder prediction 1 32 - -
Vvi10g618 564 ProSiteProfiles AGC-kinase C-terminal domain profile. 422 494 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi10g618 564 CDD STKc_NDR_like 114 485 - -
Vvi10g618 564 Pfam Protein kinase domain 117 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g618 564 PANTHER SERINE/THREONINE-PROTEIN KINASE 27 523 - -
Vvi10g618 564 Gene3D Phosphorylase Kinase; domain 1 114 199 - -
Vvi10g618 564 Gene3D Phosphorylase Kinase; domain 1 440 450 - -
Vvi10g618 564 SMART serkin_6 116 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g618 564 ProSiteProfiles Protein kinase domain profile. 116 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g618 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Vvi10g618 564 Gene3D Transferase(Phosphotransferase) domain 1 200 264 - -
Vvi10g618 564 Gene3D Transferase(Phosphotransferase) domain 1 317 439 - -
Vvi10g618 564 SUPERFAMILY Protein kinase-like (PK-like) 98 473 IPR011009 -
Vvi10g618 564 MobiDBLite consensus disorder prediction 1 44 - -
Vvi10g618 564 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 27 523 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76012 PF00069 Pkinase 2.20E-64 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g618 K08790 - vvi:100244001 1153.66