Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g620 ATGTGCAGTTACTTTAGGCAAAGGATGGAGAATTATCAAGGAGATTTGGCTGACATAGTTCGAGCTAGCGGCAGCGGTGGGGCGCGCACCTCCGATGAGCCTGTTGCTGACTGGCAATTTCCAAGCGAGCCCATGATTTTTTCGCCGGTGGTAGATGAACCCTTGGATGACTTTGGCGATCCCTTCTCAAATATGCGAGATCCGCTTCTTCATGAGCTTGGCATAGCTGGTTCAGGCTTCTTCGGCAGCTCAAATTCAAGCGGCGGTATGTTTGGTCAGAAAATTCTTGACGAGGACATGAAAAGGCCTTGCAATATCTTCTCAAGGATGCTTCAGATCTCGCCCAATGCTAGGATGCCGATCTCTCCATGCGAGTCCCAGATAGTTGCAGCTTCGCCGACGGGAATTAAGACTTCCGCCTTGGCTCCTAATGACATGATTAGTGGCAACAGCTCCAAAGGTTGCTTGATGGACAGTACTGCTTTGCAGATCTCGTCTCCACGAAATCCGGGTATCAAGAGAAGGAAGAGCCAGGCAAAGAAGGTGGTTTGTATTCCAGCTCCAGCAGCAGCAAACAGCAGGCCAAGTGGAGAAGTAGTTCCATCTGATCTCTGGGCGTGGAGGAAGTACGGTCAGAAGCCCATCAAAGGTTCTCCTTACCCAAGGGGCTATTACAGATGCAGTAGCTCAAAGGGTTGCTCGGCCAGGAAACAAGTGGAACGAAGCCGAACTGATCCAAACATGTTGGTCATCACCTACACTTCTGAACACAATCATCCGTGGCCAACGCAGAGAAATGCCCTTGCAGGCTCAACCAGATCTCAGCCATCAAAAAACAATGGAGCTTCAAAGAACTCGGGGAGCTGTCAGTCGACCCAGAAGGCAACAGGGTTGAAGGAAGAAAACAAAGAGAGCTATAACAACGATGACATGTCTCCTATTGTTGGTGGGAGTTCCACAACAGGTGCGTCTGTGAAAGAGGAGATGGGAAACGTTGAGAAGCAGCTAGAGATGGATGATAGTGAATTCAGTGAAGGGTTTCCAAGAAGCTACAAGCCTGCAATGCCGGACTCCAACCAGTCGGAGGACTTCTTCGCAGATTTAGGAGAAATAGAGGCTGACCCTCTAAATCTATTGTTCGCACAGGGATTCTCATCAGGAGATCATGAAGAGAGAGAAAGCAAGGCCTTGGATCCATTCAGTCTGTTTGATTGGACAGGGAACAACAGCAATACATCATTTGGAGAAGATAAGAGGGGTTTATAA 1266 48.82 MCSYFRQRMENYQGDLADIVRASGSGGARTSDEPVADWQFPSEPMIFSPVVDEPLDDFGDPFSNMRDPLLHELGIAGSGFFGSSNSSGGMFGQKILDEDMKRPCNIFSRMLQISPNARMPISPCESQIVAASPTGIKTSALAPNDMISGNSSKGCLMDSTALQISSPRNPGIKRRKSQAKKVVCIPAPAAANSRPSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNGASKNSGSCQSTQKATGLKEENKESYNNDDMSPIVGGSSTTGASVKEEMGNVEKQLEMDDSEFSEGFPRSYKPAMPDSNQSEDFFADLGEIEADPLNLLFAQGFSSGDHEERESKALDPFSLFDWTGNNSNTSFGEDKRGL* 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10755759 10759820 - Vvi10g620 Vvi10g620 771219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g620 421 Gene3D WRKY domain 175 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi10g620 421 MobiDBLite consensus disorder prediction 335 356 - -
Vvi10g620 421 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 13 408 - -
Vvi10g620 421 MobiDBLite consensus disorder prediction 253 323 - -
Vvi10g620 421 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 13 408 IPR044810 GO:0003700
Vvi10g620 421 MobiDBLite consensus disorder prediction 253 296 - -
Vvi10g620 421 Pfam WRKY DNA -binding domain 203 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi10g620 421 SUPERFAMILY WRKY DNA-binding domain 199 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi10g620 421 SMART WRKY_cls 201 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi10g620 421 ProSiteProfiles WRKY domain profile. 196 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi10g620 421 MobiDBLite consensus disorder prediction 308 323 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13680 PF03106 WRKY 2.30E-25 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g620 - - vvi:100250704 823.157