Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g644 ATGACTTTCCACCCAACAACATCTATTACGAATTTTATTCCTTTTTCAATTTGGCTTATTGGGTCAATCTATTTCTTTAATATAAAATCAGGTCTCAGTCAATTGTGCGACCTGGTTCTTCTGAGAATTGTTTTTGGGATCTTTTGGAAGGACTGGGTCTGTCACCAGAAAGGGCCATTTTTTCAGAGAGTAGTGATTGACAAATTAGGTTTTGATACAGATTGTTTCTGGTCAATGGAACAGTCCTCATTGGAACCAGAATTTCAGATCAAAGAGGATCATTCATCAAAGCATGCCTTGAAAAATGACAGCAATATTGAGTACTCAGGCAGTCCTCAAAATCAAAAGATATCAGCCAGATGGAACCCAACTGAAGCATGTAGGCCACTCATCGAAGAAGCTCCTGTTTTCTATCCAACTGTTGAGGAGTTTCAAGATACACTAAATTATATAGCAAGCATTCGCCCAAAAGCAGAGCCATATGGTATATGTAGGATTGTGCCACCACCTTCCTGGGTTCCACCCTGCCCTCTCAGGGAGGAGAGCATTTGGAAACATTTAAAGTTTCCTACAAGAATGCAGCAAGTGGACTTACTTCAAAATAGGGAACCCATGAGAAAGAAAAACAGAGGCCGGAAGCGAAAACGAAGAAGGTATTCAAGGATGGGAACAACAAGGAGGCATTCCAGATCTGAAGTTTCTGAAGCAAACATTGTCTCTGACAGCGATGAGAAGTTTGGGTTCCATTCAGGATCAGACTTCACATTAGAAGAGTTTCAGAAACACGCTGATAGTTTCAAAGAATTTTATTTTGGAATAAAGGATGCTAAGGATAACTTGAATTCTGATGGTGTGGAATGCAACAAAAGGTGGGAACCTTCTGTAGAAGATATTGAGGGAGAATACTGGCGGATAGTGGAGAAACCAACAGATGAGGTTGAGGTATACTATGGAGCTGATCTTGAAACTGAAGCATTTGTGAGTGGTTTTCCTAAGGCATCATCCTTGATTTCTGAAAATGATTCAGATCAGTATGTGGCTTCAGGATGGAATTTAAATAACTTCCCCCGACTGCCTGGTTCTGTACTTTGTTTTGAACAAAATGATATCTCAGGAGTTCTGGTCCCATGGCTCTATGTCGGGATGTGCTTCTCATCATTTTGTTGGCATGTTGAGGACCACCACCTATACTCACTAAATTATCTACACTGGGGTGATTCAAAAGTATGGTATGGAGTACCAGGAAGTCATGCTTCAGCATTGGAGAATGCAATGAGAAAACATCTACCTGATTTGTTTGAAGAACAACCATATTTACTGAATGAACTGGTTACTCAGTTATCTCCTTCAGTTCTAAAATCTGAAAATGTACCAGTATATCGAGCTATTCAGAATTCTGGGGAGTTTATTCTTACCTTTCCAAGAGCATACCATTCAGGGTTTAATTGTGGCTTCAATTGTGCTGAAGCTGTGAATGTGGCCCCTGTTGATTGGCTGTCACATGGGCAAAGCGCAGTGGAGCTCTACAGTGAGCAGTGTCGCAAGACATCAATTTCCCATGACAAACTGCTGTTAGCATCAGCTCAAAAAGCTGTCCAGGCACTTAGGGATCCGTCAGTTCTTGGAAAGGAAGATCAAGTAAATTTAAGCTGGAAAAGTGTCTGTGGGAAGGATGGGACACTTACGAAGGCAGTTAAGACGAGAGTACAGATGGAAGAGGAAAGACTAGATCGTCTTCCAATTGGTTGGCGGCTTCAGAAGATGGAAAGAGACTTTGATTTGAAAAATGAGAGAGAATGTTTTTCATGCTTCTATGACCTACACTTATCTGCTGCAAGTTGTGAGTGCTCTCCTGACCAATTTGCATGCCTTAAACATGCTAGCCTTATTTGTTCATGTGAACCAAATCGTAAGTTTGTCCTTCTGCGTTACACCATGGATGATTTGAAGACCCTGGTTGAATCATTGGAAGGGGGATTAGATGCTATTGAAGTATGGGCATCAGAAGACCTTGGATTGGTTTCTGCTGATAAGGATGCTTGTCTAACTAAGGGCTATGAAAGTAAGGTGGGGCAGGGGTTCTGTATTGATTTGAATCTTGATACCATGTCTGATGAACATGTAAGTGGGTTGCAGCAAGTATCTTATAGCTGTGATAGTAAAGCAACTGGAAATATGAATTTTTGTGTTGAGCCTATGCATTTTGGTACTGTATTGTTTGGAAAGCCATGGTGCAGTAAGCAGGCCATATTCCCTAAAGGATTTACAAGCCGTGTTAAATTCTTTAGTGTATGTGATCCAACACAAATGTGTTACTATATTTCAGAGGTGCTGGATGCAGGGCTCCTTGGGCCTCTATTTAAGGTTACTTCAGAGGGGTGCCCAAGTGAGACCTTTGCAAATGTCTCGCCAGAAAAATGCTGGGAAATGGTGCTGCAGAAACTGCAGCAAGAAATCATAAGACACAGCAGTTTAGGGAAACAACTGCTGCCCTCTTTGGAATGTTTGCAGGGTGTTAATGGCCTTGAGATGTTTGGGTTTTTATCACCACCCATCATTCAGGTTATTGAGGCTCTTGATCCAAATCATCAATGCTTAGAATACTGGAATCAGAAGAGTAGAGCAAAACTCTTTGGTTTCGATTTGACAAAGCAAGACCCTGATAATTCAAGCATTGGAAGAGGTGATCACTCAGTTGGGGAAGACATAAAGACCACATTACAAGGATTTTTCAAGAAGGCAAATAGGGAAGAACTGATAATGATGTATAAGGTATTCTGCAGCGAGTACACAAGTGCAGAATGGGGAGTGGCATTCACAACGCTGACCGAGGAGATCCGGAAAACATGTAAATAA 2856 41.39 MTFHPTTSITNFIPFSIWLIGSIYFFNIKSGLSQLCDLVLLRIVFGIFWKDWVCHQKGPFFQRVVIDKLGFDTDCFWSMEQSSLEPEFQIKEDHSSKHALKNDSNIEYSGSPQNQKISARWNPTEACRPLIEEAPVFYPTVEEFQDTLNYIASIRPKAEPYGICRIVPPPSWVPPCPLREESIWKHLKFPTRMQQVDLLQNREPMRKKNRGRKRKRRRYSRMGTTRRHSRSEVSEANIVSDSDEKFGFHSGSDFTLEEFQKHADSFKEFYFGIKDAKDNLNSDGVECNKRWEPSVEDIEGEYWRIVEKPTDEVEVYYGADLETEAFVSGFPKASSLISENDSDQYVASGWNLNNFPRLPGSVLCFEQNDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDSKVWYGVPGSHASALENAMRKHLPDLFEEQPYLLNELVTQLSPSVLKSENVPVYRAIQNSGEFILTFPRAYHSGFNCGFNCAEAVNVAPVDWLSHGQSAVELYSEQCRKTSISHDKLLLASAQKAVQALRDPSVLGKEDQVNLSWKSVCGKDGTLTKAVKTRVQMEEERLDRLPIGWRLQKMERDFDLKNERECFSCFYDLHLSAASCECSPDQFACLKHASLICSCEPNRKFVLLRYTMDDLKTLVESLEGGLDAIEVWASEDLGLVSADKDACLTKGYESKVGQGFCIDLNLDTMSDEHVSGLQQVSYSCDSKATGNMNFCVEPMHFGTVLFGKPWCSKQAIFPKGFTSRVKFFSVCDPTQMCYYISEVLDAGLLGPLFKVTSEGCPSETFANVSPEKCWEMVLQKLQQEIIRHSSLGKQLLPSLECLQGVNGLEMFGFLSPPIIQVIEALDPNHQCLEYWNQKSRAKLFGFDLTKQDPDNSSIGRGDHSVGEDIKTTLQGFFKKANREELIMMYKVFCSEYTSAEWGVAFTTLTEEIRKTCK* 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11527945 11538707 - Vvi10g644 Vvi10g644 771243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g644 951 MobiDBLite consensus disorder prediction 202 236 - -
Vvi10g644 951 ProSiteProfiles JmjC domain profile. 344 510 IPR003347 -
Vvi10g644 951 Pfam JmjC domain, hydroxylase 377 493 IPR003347 -
Vvi10g644 951 ProSiteProfiles JmjN domain profile. 134 175 IPR003349 -
Vvi10g644 951 SMART JmjN_1 133 174 IPR003349 -
Vvi10g644 951 SMART fyrn_3 736 780 IPR003888 GO:0005634
Vvi10g644 951 SMART cupin_9 344 510 IPR003347 -
Vvi10g644 951 Pfam jmjN domain 135 168 IPR003349 -
Vvi10g644 951 SUPERFAMILY Clavaminate synthase-like 345 531 - -
Vvi10g644 951 ProSiteProfiles FYR domain FYRN motif profile. 722 780 IPR003888 GO:0005634
Vvi10g644 951 SMART fyrc_3 786 878 IPR003889 GO:0005634
Vvi10g644 951 MobiDBLite consensus disorder prediction 206 224 - -
Vvi10g644 951 Pfam C5HC2 zinc finger 600 652 IPR004198 -
Vvi10g644 951 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 87 672 - -
Vvi10g644 951 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 712 947 - -
Vvi10g644 951 Pfam F/Y-rich N-terminus 735 777 IPR003888 GO:0005634
Vvi10g644 951 Pfam F/Y rich C-terminus 784 872 IPR003889 GO:0005634
Vvi10g644 951 ProSiteProfiles FYR domain FYRC motif profile. 782 872 IPR003889 GO:0005634
Vvi10g644 951 PANTHER LYSINE-SPECIFIC DEMETHYLASE 87 672 - -
Vvi10g644 951 PANTHER LYSINE-SPECIFIC DEMETHYLASE 712 947 - -
Vvi10g644 951 Gene3D Cupin 119 494 - -
Vvi10g644 951 Gene3D - 730 866 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g644 - - - vvi:100252938 1211.44
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g644 . . . . . . . Bma01g01602 Cmo13g00490 . . . . . . Cpe09g00704 . . . . . . . . . . . . . . . . . . . . . Chy12g00459 . . . Bda01g00098 . Bpe02g01049 . . . . . . Cma13g00454 . Car13g00351 . . Cpe20g00587 Bhi08g00940 Tan05g2762 . . . . . . . . . . . . Lsi02g01004 Csa01g02670 . Cme12g01007
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi14g610 . 1 1176 JUMONJI Transcription Factor Family AT1G08620 56.2 0.0e+00 1264.6
Vvi7g573 . 31 584 JUMONJI Transcription Factor Family AT1G08620 57.6 4.5e-203 705.7
Vvi10g644 . 79 882 JUMONJI Transcription Factor Family AT1G30810 57.8 1.0e-270 929.9
Vvi7g573 . 49 572 JUMONJI Transcription Factor Family AT1G30810 51.0 2.4e-160 563.1
Vvi10g644 . 111 882 JUMONJI Transcription Factor Family AT2G34880 53.8 2.1e-241 832.4
Vvi10g644 . 142 946 JUMONJI Transcription Factor Family AT4G20400 53.2 1.2e-256 883.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13682 PF02373 JmjC 2.40E-44 CL0029 Vvi TR