Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g644 ATGACTTTCCACCCAACAACATCTATTACGAATTTTATTCCTTTTTCAATTTGGCTTATTGGGTCAATCTATTTCTTTAATATAAAATCAGGTCTCAGTCAATTGTGCGACCTGGTTCTTCTGAGAATTGTTTTTGGGATCTTTTGGAAGGACTGGGTCTGTCACCAGAAAGGGCCATTTTTTCAGAGAGTAGTGATTGACAAATTAGGTTTTGATACAGATTGTTTCTGGTCAATGGAACAGTCCTCATTGGAACCAGAATTTCAGATCAAAGAGGATCATTCATCAAAGCATGCCTTGAAAAATGACAGCAATATTGAGTACTCAGGCAGTCCTCAAAATCAAAAGATATCAGCCAGATGGAACCCAACTGAAGCATGTAGGCCACTCATCGAAGAAGCTCCTGTTTTCTATCCAACTGTTGAGGAGTTTCAAGATACACTAAATTATATAGCAAGCATTCGCCCAAAAGCAGAGCCATATGGTATATGTAGGATTGTGCCACCACCTTCCTGGGTTCCACCCTGCCCTCTCAGGGAGGAGAGCATTTGGAAACATTTAAAGTTTCCTACAAGAATGCAGCAAGTGGACTTACTTCAAAATAGGGAACCCATGAGAAAGAAAAACAGAGGCCGGAAGCGAAAACGAAGAAGGTATTCAAGGATGGGAACAACAAGGAGGCATTCCAGATCTGAAGTTTCTGAAGCAAACATTGTCTCTGACAGCGATGAGAAGTTTGGGTTCCATTCAGGATCAGACTTCACATTAGAAGAGTTTCAGAAACACGCTGATAGTTTCAAAGAATTTTATTTTGGAATAAAGGATGCTAAGGATAACTTGAATTCTGATGGTGTGGAATGCAACAAAAGGTGGGAACCTTCTGTAGAAGATATTGAGGGAGAATACTGGCGGATAGTGGAGAAACCAACAGATGAGGTTGAGGTATACTATGGAGCTGATCTTGAAACTGAAGCATTTGTGAGTGGTTTTCCTAAGGCATCATCCTTGATTTCTGAAAATGATTCAGATCAGTATGTGGCTTCAGGATGGAATTTAAATAACTTCCCCCGACTGCCTGGTTCTGTACTTTGTTTTGAACAAAATGATATCTCAGGAGTTCTGGTCCCATGGCTCTATGTCGGGATGTGCTTCTCATCATTTTGTTGGCATGTTGAGGACCACCACCTATACTCACTAAATTATCTACACTGGGGTGATTCAAAAGTATGGTATGGAGTACCAGGAAGTCATGCTTCAGCATTGGAGAATGCAATGAGAAAACATCTACCTGATTTGTTTGAAGAACAACCATATTTACTGAATGAACTGGTTACTCAGTTATCTCCTTCAGTTCTAAAATCTGAAAATGTACCAGTATATCGAGCTATTCAGAATTCTGGGGAGTTTATTCTTACCTTTCCAAGAGCATACCATTCAGGGTTTAATTGTGGCTTCAATTGTGCTGAAGCTGTGAATGTGGCCCCTGTTGATTGGCTGTCACATGGGCAAAGCGCAGTGGAGCTCTACAGTGAGCAGTGTCGCAAGACATCAATTTCCCATGACAAACTGCTGTTAGCATCAGCTCAAAAAGCTGTCCAGGCACTTAGGGATCCGTCAGTTCTTGGAAAGGAAGATCAAGTAAATTTAAGCTGGAAAAGTGTCTGTGGGAAGGATGGGACACTTACGAAGGCAGTTAAGACGAGAGTACAGATGGAAGAGGAAAGACTAGATCGTCTTCCAATTGGTTGGCGGCTTCAGAAGATGGAAAGAGACTTTGATTTGAAAAATGAGAGAGAATGTTTTTCATGCTTCTATGACCTACACTTATCTGCTGCAAGTTGTGAGTGCTCTCCTGACCAATTTGCATGCCTTAAACATGCTAGCCTTATTTGTTCATGTGAACCAAATCGTAAGTTTGTCCTTCTGCGTTACACCATGGATGATTTGAAGACCCTGGTTGAATCATTGGAAGGGGGATTAGATGCTATTGAAGTATGGGCATCAGAAGACCTTGGATTGGTTTCTGCTGATAAGGATGCTTGTCTAACTAAGGGCTATGAAAGTAAGGTGGGGCAGGGGTTCTGTATTGATTTGAATCTTGATACCATGTCTGATGAACATGTAAGTGGGTTGCAGCAAGTATCTTATAGCTGTGATAGTAAAGCAACTGGAAATATGAATTTTTGTGTTGAGCCTATGCATTTTGGTACTGTATTGTTTGGAAAGCCATGGTGCAGTAAGCAGGCCATATTCCCTAAAGGATTTACAAGCCGTGTTAAATTCTTTAGTGTATGTGATCCAACACAAATGTGTTACTATATTTCAGAGGTGCTGGATGCAGGGCTCCTTGGGCCTCTATTTAAGGTTACTTCAGAGGGGTGCCCAAGTGAGACCTTTGCAAATGTCTCGCCAGAAAAATGCTGGGAAATGGTGCTGCAGAAACTGCAGCAAGAAATCATAAGACACAGCAGTTTAGGGAAACAACTGCTGCCCTCTTTGGAATGTTTGCAGGGTGTTAATGGCCTTGAGATGTTTGGGTTTTTATCACCACCCATCATTCAGGTTATTGAGGCTCTTGATCCAAATCATCAATGCTTAGAATACTGGAATCAGAAGAGTAGAGCAAAACTCTTTGGTTTCGATTTGACAAAGCAAGACCCTGATAATTCAAGCATTGGAAGAGGTGATCACTCAGTTGGGGAAGACATAAAGACCACATTACAAGGATTTTTCAAGAAGGCAAATAGGGAAGAACTGATAATGATGTATAAGGTATTCTGCAGCGAGTACACAAGTGCAGAATGGGGAGTGGCATTCACAACGCTGACCGAGGAGATCCGGAAAACATGTAAATAA 2856 41.39 MTFHPTTSITNFIPFSIWLIGSIYFFNIKSGLSQLCDLVLLRIVFGIFWKDWVCHQKGPFFQRVVIDKLGFDTDCFWSMEQSSLEPEFQIKEDHSSKHALKNDSNIEYSGSPQNQKISARWNPTEACRPLIEEAPVFYPTVEEFQDTLNYIASIRPKAEPYGICRIVPPPSWVPPCPLREESIWKHLKFPTRMQQVDLLQNREPMRKKNRGRKRKRRRYSRMGTTRRHSRSEVSEANIVSDSDEKFGFHSGSDFTLEEFQKHADSFKEFYFGIKDAKDNLNSDGVECNKRWEPSVEDIEGEYWRIVEKPTDEVEVYYGADLETEAFVSGFPKASSLISENDSDQYVASGWNLNNFPRLPGSVLCFEQNDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDSKVWYGVPGSHASALENAMRKHLPDLFEEQPYLLNELVTQLSPSVLKSENVPVYRAIQNSGEFILTFPRAYHSGFNCGFNCAEAVNVAPVDWLSHGQSAVELYSEQCRKTSISHDKLLLASAQKAVQALRDPSVLGKEDQVNLSWKSVCGKDGTLTKAVKTRVQMEEERLDRLPIGWRLQKMERDFDLKNERECFSCFYDLHLSAASCECSPDQFACLKHASLICSCEPNRKFVLLRYTMDDLKTLVESLEGGLDAIEVWASEDLGLVSADKDACLTKGYESKVGQGFCIDLNLDTMSDEHVSGLQQVSYSCDSKATGNMNFCVEPMHFGTVLFGKPWCSKQAIFPKGFTSRVKFFSVCDPTQMCYYISEVLDAGLLGPLFKVTSEGCPSETFANVSPEKCWEMVLQKLQQEIIRHSSLGKQLLPSLECLQGVNGLEMFGFLSPPIIQVIEALDPNHQCLEYWNQKSRAKLFGFDLTKQDPDNSSIGRGDHSVGEDIKTTLQGFFKKANREELIMMYKVFCSEYTSAEWGVAFTTLTEEIRKTCK* 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11527945 11538707 - Vvi10g644 Vvi10g644 771243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g644 951 MobiDBLite consensus disorder prediction 202 236 - -
Vvi10g644 951 ProSiteProfiles JmjC domain profile. 344 510 IPR003347 -
Vvi10g644 951 Pfam JmjC domain, hydroxylase 377 493 IPR003347 -
Vvi10g644 951 ProSiteProfiles JmjN domain profile. 134 175 IPR003349 -
Vvi10g644 951 SMART JmjN_1 133 174 IPR003349 -
Vvi10g644 951 SMART fyrn_3 736 780 IPR003888 GO:0005634
Vvi10g644 951 SMART cupin_9 344 510 IPR003347 -
Vvi10g644 951 Pfam jmjN domain 135 168 IPR003349 -
Vvi10g644 951 SUPERFAMILY Clavaminate synthase-like 345 531 - -
Vvi10g644 951 ProSiteProfiles FYR domain FYRN motif profile. 722 780 IPR003888 GO:0005634
Vvi10g644 951 SMART fyrc_3 786 878 IPR003889 GO:0005634
Vvi10g644 951 MobiDBLite consensus disorder prediction 206 224 - -
Vvi10g644 951 Pfam C5HC2 zinc finger 600 652 IPR004198 -
Vvi10g644 951 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 87 672 - -
Vvi10g644 951 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 712 947 - -
Vvi10g644 951 Pfam F/Y-rich N-terminus 735 777 IPR003888 GO:0005634
Vvi10g644 951 Pfam F/Y rich C-terminus 784 872 IPR003889 GO:0005634
Vvi10g644 951 ProSiteProfiles FYR domain FYRC motif profile. 782 872 IPR003889 GO:0005634
Vvi10g644 951 PANTHER LYSINE-SPECIFIC DEMETHYLASE 87 672 - -
Vvi10g644 951 PANTHER LYSINE-SPECIFIC DEMETHYLASE 712 947 - -
Vvi10g644 951 Gene3D Cupin 119 494 - -
Vvi10g644 951 Gene3D - 730 866 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13682 PF02373 JmjC 2.40E-44 CL0029 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g644 - - vvi:100252938 1211.44