Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g667 ATGGCCATTTTCTCAGAACGAGCAATTGTGCTACTCTTCTTTCTTTCTTCTCTTATCATCCATGGAAGCCCAAAGCCTGACCTCTTCTACAGCCTTTGTACTGAAAATGGCAACTATGAACCCAATAGCACTTACCAGTATAACCTCAACCTCCTCCTCACTTCCCTGTCGTCAAATGCTGCAACACTTAACGGCCGCAAATTCCACAACCAGACGGCAGGCCAAGCGCCAGACATGGTATATGGCCTCTACCTATGCAGGGGGGATGTCACAGACGCAGTATGCCAGAACTGCGTCCAGACTGCAAGTCAAGAGATTCTGACCAAGTGTCCCAACAGAAAAGAGGTAATCAGTTGGTACGACCAGTGCATGTTTCGGTACTCCAACCGATCAATCTTCTCAATAATGGAAGAAAGGCCAAGTGTGACTGGGTCTAACGAATTGGAGATGGAGGACCCAGATAGGTTTGATCAGATTGTGAATGAAACCATGGTGGGTATGATTGAAAAGGCTACCTATAATTCTTCTGAGAGAGACATGTTTGAGACTGGAGAAGCAAAATTTAATGCGTCCACCAAGATATATGGTTTGGCGCAGTGCACACCAGATTTATCCGGCAGCGATTGTAGGAGGTGCCTTGAAAATATTTTTTCTCGTATTCCTAATTGTTGCTATGGGAAGCAAGGGGCCAGGATTCTAGGACCAAGCTGCAACTTCAGGTACGAGGTGTACCCTTTCTATGGAGACTTTGCAGCTGCTGCACCGCTTGCACCTTCACCTCTGTCACCTCCAGAAGGAAGCAAAAGTGACTCCACGCCAAGTGCTTTTGGGGAAGATAGTCAAAGCATGGACTCGACCATGGATTCACTACTCTTTGATTTGAAGACACTTAGAGCTGCCACTAACAACTTCTCTGATGCTAATAAGATTGGTGAAGGGGGCTTTGGAGCTGTTTACAAGGGTCTACTTTCAAGTGGACTAGAGATAGCTATAAAAAGGCTCTCAAGAAATTCAGGGCAAGGGACAGAAGAATTCAAGAATGAAATTGCATTACTTGCTAAACTTCAACATAGGAATCTTGTTCGCCTTTTGGGGTTTTGCTTGGAAGCAAAAGAGAAAATACTCGTCTATGAGTTTGTGCCCAATAAAAGCCTCGACTACTTTCTATTTGATACTGACAAACAATCACAGTTGGATTGGCCTACACGACACAAGATTATAGTGGGTATTGCTCGAGGACTACTTTACCTGCATGAGGAATCTAGGTTGAAGATCATTCACCGTGATCTTAAAGCTAGCAACATATTATTGGACTCCAAGTTGAATCCCAAAATTTCTGACTTTGGCATGGCAAGGATTTTCTTTATGGAGCAAAGTCAAGCAAATACAACGAGGATTGTAGGGACATATGGTTACATGTCTCCTGAGTATGCAATGCATGGACAATTTTCAGTGAAGTCAGATGTGTTCAGTTTTGGTGTTTTGCTTCTAGAGATACTAAGCGGCAAGAAGAATAGTTGTTTCAACAACTCAGAGTGCAGCCAGGACCTTCTAAGCTATGCTTGGAGACAGTGGAAGGATCGAACAGCTCTGGAACTGATAGATCCAATTGTGGGAGGAGAGTATTCAAGAAGTGAAGTAATGAGATGCATCCATATTGGGTTATTATGTGTTCAAGAAGATGCAGCTGACAGACCCACAATGGCATCAGTAGCTCTCATGCTAAACAGCTATTCTGTTACTCTCCCTTTGCCTTCAAAACCCGCCTTCTTCCTTCATTCTAAAAAGGAATCCAATCCATCCACCAGCAAATCTGGTGGCAGTATAGGCCACTTCGGTGTATGTTAA 1848 43.89 MAIFSERAIVLLFFLSSLIIHGSPKPDLFYSLCTENGNYEPNSTYQYNLNLLLTSLSSNAATLNGRKFHNQTAGQAPDMVYGLYLCRGDVTDAVCQNCVQTASQEILTKCPNRKEVISWYDQCMFRYSNRSIFSIMEERPSVTGSNELEMEDPDRFDQIVNETMVGMIEKATYNSSERDMFETGEAKFNASTKIYGLAQCTPDLSGSDCRRCLENIFSRIPNCCYGKQGARILGPSCNFRYEVYPFYGDFAAAAPLAPSPLSPPEGSKSDSTPSAFGEDSQSMDSTMDSLLFDLKTLRAATNNFSDANKIGEGGFGAVYKGLLSSGLEIAIKRLSRNSGQGTEEFKNEIALLAKLQHRNLVRLLGFCLEAKEKILVYEFVPNKSLDYFLFDTDKQSQLDWPTRHKIIVGIARGLLYLHEESRLKIIHRDLKASNILLDSKLNPKISDFGMARIFFMEQSQANTTRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVLLLEILSGKKNSCFNNSECSQDLLSYAWRQWKDRTALELIDPIVGGEYSRSEVMRCIHIGLLCVQEDAADRPTMASVALMLNSYSVTLPLPSKPAFFLHSKKESNPSTSKSGGSIGHFGVC* 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12423831 12427497 + Vvi10g667 Vvi10g667 771266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g667 615 ProSiteProfiles Gnk2-homologous domain profile. 27 132 IPR002902 -
Vvi10g667 615 MobiDBLite consensus disorder prediction 595 615 - -
Vvi10g667 615 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Vvi10g667 615 MobiDBLite consensus disorder prediction 258 283 - -
Vvi10g667 615 CDD STKc_IRAK 310 576 - -
Vvi10g667 615 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 285 603 - -
Vvi10g667 615 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 7 271 - -
Vvi10g667 615 ProSiteProfiles Protein kinase domain profile. 304 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g667 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Vvi10g667 615 SMART serkin_6 304 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g667 615 SUPERFAMILY Protein kinase-like (PK-like) 287 598 IPR011009 -
Vvi10g667 615 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 271 - -
Vvi10g667 615 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 285 603 - -
Vvi10g667 615 Gene3D Transferase(Phosphotransferase) domain 1 380 582 - -
Vvi10g667 615 Gene3D - 26 131 IPR038408 -
Vvi10g667 615 Gene3D - 141 246 IPR038408 -
Vvi10g667 615 MobiDBLite consensus disorder prediction 264 283 - -
Vvi10g667 615 Gene3D Phosphorylase Kinase; domain 1 271 379 - -
Vvi10g667 615 Pfam Salt stress response/antifungal 33 129 IPR002902 -
Vvi10g667 615 Pfam Salt stress response/antifungal 151 243 IPR002902 -
Vvi10g667 615 ProSiteProfiles Gnk2-homologous domain profile. 138 246 IPR002902 -
Vvi10g667 615 Pfam Protein tyrosine and serine/threonine kinase 308 572 IPR001245 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76017 PF07714 PK_Tyr_Ser-Thr 9.90E-49 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g667 - - vvi:100259667 1176.39