Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g671 ATGAAGTTGTGTTCCATCTCCTTCTTCCTGCTCCTCTTGTTTCAGAAATCCCTGGCTAAAAATGCTACTCTCGACTCATCTGAAGTGGAAGCATTGAATTTTCTGTTCAACAAATGGAACATGACGTCAACAGAATTTTGGAACATGAGTGGGGATCCATGCAGTGGACCTCCTATTAATCAGAGTCAATACGATGATATTTATTATAGACAAGCTATCAAATGTAATTGCACTTACAATGACAACACCACCTGCCATATCACACATCTGAAAGTACTAAATTTGAACAAAACAGGATTAATTCCAGAGGAGCTCACAGCACTAACTTTTCTTAGTGATTTGAGGCTTAATAAAAATTACTTCACTGGGCCTTTGCCTTTATTTATTGCAAATTTATCTCAAATGCAGTTCATTGATGTTGGCCACAATGCATTATCTGGGACCATTCCTAAGGAGCTTGGAAATCTTAAAGAACTACAAATGTTGGCTATTGGTTCAAATAACTTCTCTGGAACTCTCCCTCCAGAACTTGGAAATCTACCCAAACTTGAGCTGATTTTCATAGACAGCAGTGGAGTGGGTGGTGAGATCCCCTCAACGTTTGTTAAACTTAAAAACATGCGAGAAATGTTTTTATCAGACACTCCACTCACAGGAAAGATACCAGACTTCATAGGGAACTGGACAAAGCTCAAACGACTGAGAATTCAAGGGAACTCTTTTGAAGGTCCAATACCATCCACTTTCTCTCAATTGATCTCAATGGAATCTCTGAGAATAAGTGATCTTGCCAATGTGAGCTCATCTCTTGATTTCATCAAGGATATGAAGAATTTAACAGACTTAGTTCTAAGGAATGCATTGCTCTCTGGTGGTATTCCATCTGATATTGAAGAATACCGCAGTTTAGAAACACTGGATTTGAGTTTCAACAACTTAACAGGAGGAATTCCAAATGCTTTGTTCAACATGAACAATCTCACTGCCTTGTTTCTTGGAAACAATAGCTTCTATGGTTCTCTTCCTGACAAAAAAAGTGATAAGCTTCAAACCATAGATTTGTCATACAATGAGATATCAGGAGGTTTTCCTACATGGATTGATCCAACTTTACAATTGAATTTAGTGGCTAATAACTTTGTATTTGACAACACAAACAACAGTATTTTTGAAGGACTGAACTGTCTTCAGAGGAACTTTCCATGCAACACTCCACGCTATACCAATGTCTCAATCAAGTGTGGTGGACAAGAGGTGACAACGCCTGATGGCATGGTATATGAGTCTGATAATTCAATTCTTGGCACTGCATCAACATCATATTATGTAAGCAGATCAGAGAAATGGGCTGTTAGCAATGTGGGTCTGTATGTTGACAGAATTGCAAATACCTCATCACTAGTTAATGGCACTGACACCCCAGAGCTTTTCAAAACTTCAAGGATATCACCGGGTTCACTTAGATACTATGGCCTGGGTCTCAAGAATGGACCTTATGTTGTAAGTTTGCAATTCGCAGAAATGTTACTTAAGGATCCGAGCACACGAACTTGGGAGAGTACAGGAAGGCGTGTTTTTGATATATATATTCAGGGAGCACTTAAAGAGAAGGACTTTGACATATCAAAAGAGGCAGGTGGGGTCCAGAGAGCAATTGTGAAAAAATTCAATACTACTGTGTCGAAGAACTATCTTGAAATTCATCTGCTTTGGGCTGGTAAGGGTACTTGCTGCATCCCATTTGAAGGTTATTATGGACCATCCATTTCGGCTCTCAGTGTTGTTTCAGCTTTGGAAAGAATGCCACCTCCTCCATCAGAGACAAGCAACACTGGGTTAATTGCTGGCATTGCAGTCACTGCTGGTATTCTATGCTTTATACTCGTATGTGCAGTTTTTTACATCAAAAGGAGAGGGTCTAATTCCAATGAAGAGATAGAGCTTCTTGAAATAGGCCCCATATCGAACACCTTTAGTTATGCGGAGTTGCGAACTGCAACAGAAAACTTCAATCCTACAAATAAGCTAGGGGAGGGTGGATTTGGAGCTGTTTTCAAGGGCACTCTTCTTGATGGGAGGGTAGTAGCTGTGAAGGATCTTATGGTAGCATCTCAACAAGGGAAGAGTCAATTTATAGCAGAGATTGCTACCATATCTGCAGTGCAGCATCGCAACCTCGTGAAGTTGCATGGATTCTGCATCAAAGAAAATAAACGGCTCCTAGTTTATGAGTATCTTGAAAACAAGAGCCTCGATCGTGCTCTCTTTGGGAAAAGTGATTTACATCTTGATTGGCCAACCCGCTTTAATATATGTTTGGGAACAGCGAGAGGGTTAGCTTATCTTCATGAGGAATCAAGGGCAAGAATTGTACACCGGGATGTCAAGGCCAGCAATATTTTGCTTGATGCAGAACTCTGCCCCAAGATATCAGATTTTGGATTGGCAAAGCTGTATGATGACAAGAAAACCCACATCAGTACCCGGGTTGCAGGCACCATTGGCTATCTGGCACCAGAGTATGCAATGCGCGGGCATCTGACAGAGAAGGCTGATGTTTTTGGATTTGGTGTAGTGGCTCTAGAGATCCTCAGCGGGAGACCAAACTCCGACAACAGCTTGGATGCAAGAAAGATGTATCTTCTTGAATGGGCATGGACTTTACACGAAAACAACCAAAGTATGGATTTAGTTGATCCAACATTAACAGAATTTGATGAAAATGAAGTCAGTCGAGTCGTAAGAGTGGCTCTCTTGTGCACCCAGGGATCACCAATGTTGCGGCCAGCCATGTCACGGGTCGTGGCAATGCTTGCTGGAGGCGTTGAAATAAGTGCAGTTACATCAAAACCCAGTTATTTAACAGATTGGGATTTCAATGATATTACAAGCAGCTTTTTGAGCGAAAATACTCGAACATCTACTGCTTCAACAAGTATGACTGACCAACTGCCTTCCCCTATATATCACACTGAACCGATGCTCCTTGGAGTCATTGGAGAAGGGAGGTAA 3012 41.24 MKLCSISFFLLLLFQKSLAKNATLDSSEVEALNFLFNKWNMTSTEFWNMSGDPCSGPPINQSQYDDIYYRQAIKCNCTYNDNTTCHITHLKVLNLNKTGLIPEELTALTFLSDLRLNKNYFTGPLPLFIANLSQMQFIDVGHNALSGTIPKELGNLKELQMLAIGSNNFSGTLPPELGNLPKLELIFIDSSGVGGEIPSTFVKLKNMREMFLSDTPLTGKIPDFIGNWTKLKRLRIQGNSFEGPIPSTFSQLISMESLRISDLANVSSSLDFIKDMKNLTDLVLRNALLSGGIPSDIEEYRSLETLDLSFNNLTGGIPNALFNMNNLTALFLGNNSFYGSLPDKKSDKLQTIDLSYNEISGGFPTWIDPTLQLNLVANNFVFDNTNNSIFEGLNCLQRNFPCNTPRYTNVSIKCGGQEVTTPDGMVYESDNSILGTASTSYYVSRSEKWAVSNVGLYVDRIANTSSLVNGTDTPELFKTSRISPGSLRYYGLGLKNGPYVVSLQFAEMLLKDPSTRTWESTGRRVFDIYIQGALKEKDFDISKEAGGVQRAIVKKFNTTVSKNYLEIHLLWAGKGTCCIPFEGYYGPSISALSVVSALERMPPPPSETSNTGLIAGIAVTAGILCFILVCAVFYIKRRGSNSNEEIELLEIGPISNTFSYAELRTATENFNPTNKLGEGGFGAVFKGTLLDGRVVAVKDLMVASQQGKSQFIAEIATISAVQHRNLVKLHGFCIKENKRLLVYEYLENKSLDRALFGKSDLHLDWPTRFNICLGTARGLAYLHEESRARIVHRDVKASNILLDAELCPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEILSGRPNSDNSLDARKMYLLEWAWTLHENNQSMDLVDPTLTEFDENEVSRVVRVALLCTQGSPMLRPAMSRVVAMLAGGVEISAVTSKPSYLTDWDFNDITSSFLSENTRTSTASTSMTDQLPSPIYHTEPMLLGVIGEGR* 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12545888 12562513 + Vvi10g671 Vvi10g671 771270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g671 1003 Gene3D Transferase(Phosphotransferase) domain 1 746 950 - -
Vvi10g671 1003 Pfam Malectin domain 409 592 IPR021720 -
Vvi10g671 1003 Pfam Leucine Rich Repeat 302 322 IPR001611 GO:0005515
Vvi10g671 1003 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 89 984 - -
Vvi10g671 1003 SUPERFAMILY L domain-like 68 383 - -
Vvi10g671 1003 Gene3D Ribonuclease Inhibitor 266 401 IPR032675 -
Vvi10g671 1003 Gene3D - 407 598 - -
Vvi10g671 1003 ProSiteProfiles Protein kinase domain profile. 670 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g671 1003 Gene3D Phosphorylase Kinase; domain 1 641 745 - -
Vvi10g671 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672|GO:0006468
Vvi10g671 1003 CDD STKc_IRAK 676 938 - -
Vvi10g671 1003 PANTHER BNAC03G71060D PROTEIN 89 984 - -
Vvi10g671 1003 Pfam Protein tyrosine and serine/threonine kinase 673 937 IPR001245 GO:0004672|GO:0006468
Vvi10g671 1003 SMART serkin_6 670 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g671 1003 Gene3D Ribonuclease Inhibitor 10 265 IPR032675 -
Vvi10g671 1003 ProSitePatterns Protein kinases ATP-binding region signature. 676 698 IPR017441 GO:0005524
Vvi10g671 1003 SUPERFAMILY Protein kinase-like (PK-like) 655 975 IPR011009 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76019 PF07714 PK_Tyr_Ser-Thr 2.40E-44 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g671 - - vvi:100256326 1988.0