Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi10g689 | ATGAAGCGCGTGAGGAGCGCAGCTCTTCTCTACAAACTTTCTCTCTCTACCATCTTCATTGCTCATTCTCTCTCTAAACATCTTGTTACCGCAACACCAGCTCATACTCGGAGTCAGACTACCAACAAAACAAAAACACCAAACACCGGGCAAAGGAAGAGAACCAGTTGGTGGAAGAAGAAATTTTTTTTTGAGGGAATTTCAAAACATATGTCTACCTCAGATGGAGCGGCTAACGGCGTTACTAACGGCGCTATTGTTGACTCCCAGAGGCAGCAGCAGCCCGGTAACGGGGCCTTGGCGGTAAAGAAGCCGCCGGCCAAGGACCGCCACAGCAAAGTCGACGGTCGGGGCAGGCGTATCCGGATGCCGATCATCTGCGCCGCCAGGGTTTTCCAGTTGACGCGGGAGCTGGGGCACAAATCTGATGGTCAAACTATCGAGTGGCTGCTGCGGCAGGCGGAGCCGTCGATCATAGCGGCCACAGGGACGGGGACCACTCCTGCGAGTTTTTCGAGCGTTTCTGTCTCTCCCGACGCCGTGGTCGCTGCCGCGGCTGCTGCTGCCGCCGCCGCCGGTGGTTTCTGGGCGCCGACGATCTCCGGGAGGTTCATGCAGCAGCCGATGGGAGAGGCGTCGGCGGCTAGAGTTGGGAATTATCTTCCGATCGCGCAGGGACATCTGAATTTGCTGGCGTCGTTGTCTGGAGCTCCGGCATCGTCGGGGAGGAGAGACGACGATCCACCAACTGAAGGAGATGACTCAAAAGAGGGCGGCTTGGAGGTCGTCAATGACTTTGAGGGAGGCTTCTTGGGGTTCCATTCCTTGGGATTCGTAGTGGGCAATGAGGCTTTTTGGGGGTTCTAG | 867 | 56.63 | MKRVRSAALLYKLSLSTIFIAHSLSKHLVTATPAHTRSQTTNKTKTPNTGQRKRTSWWKKKFFFEGISKHMSTSDGAANGVTNGAIVDSQRQQQPGNGALAVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSVSPDAVVAAAAAAAAAAGGFWAPTISGRFMQQPMGEASAARVGNYLPIAQGHLNLLASLSGAPASSGRRDDDPPTEGDDSKEGGLEVVNDFEGGFLGFHSLGFVVGNEAFWGF* | 289 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 12936186 | 12943830 | - | Vvi10g689 | Vvi10g689 | 771288 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi10g689 | 288 | PANTHER | TRANSCRIPTION FACTOR TCP21-RELATED | 71 | 181 | - | - | |
Vvi10g689 | 288 | PANTHER | TRANSCRIPTION FACTOR TCP21-RELATED | 204 | 246 | - | - | |
Vvi10g689 | 288 | MobiDBLite | consensus disorder prediction | 236 | 259 | - | - | |
Vvi10g689 | 288 | MobiDBLite | consensus disorder prediction | 244 | 259 | - | - | |
Vvi10g689 | 288 | Pfam | TCP family transcription factor | 107 | 180 | IPR017887 | - | |
Vvi10g689 | 288 | MobiDBLite | consensus disorder prediction | 89 | 115 | - | - | |
Vvi10g689 | 288 | MobiDBLite | consensus disorder prediction | 32 | 52 | - | - | |
Vvi10g689 | 288 | ProSiteProfiles | TCP domain profile. | 107 | 161 | IPR017887 | - | |
Vvi10g689 | 288 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 204 | 246 | IPR005333 | GO:0003700 | |
Vvi10g689 | 288 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 71 | 181 | IPR005333 | GO:0003700 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13686 | PF03634 | TCP | 5.30E-31 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi10g689 | K16221 | - | vvi:100253181 | 260.381 |