Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g689 ATGAAGCGCGTGAGGAGCGCAGCTCTTCTCTACAAACTTTCTCTCTCTACCATCTTCATTGCTCATTCTCTCTCTAAACATCTTGTTACCGCAACACCAGCTCATACTCGGAGTCAGACTACCAACAAAACAAAAACACCAAACACCGGGCAAAGGAAGAGAACCAGTTGGTGGAAGAAGAAATTTTTTTTTGAGGGAATTTCAAAACATATGTCTACCTCAGATGGAGCGGCTAACGGCGTTACTAACGGCGCTATTGTTGACTCCCAGAGGCAGCAGCAGCCCGGTAACGGGGCCTTGGCGGTAAAGAAGCCGCCGGCCAAGGACCGCCACAGCAAAGTCGACGGTCGGGGCAGGCGTATCCGGATGCCGATCATCTGCGCCGCCAGGGTTTTCCAGTTGACGCGGGAGCTGGGGCACAAATCTGATGGTCAAACTATCGAGTGGCTGCTGCGGCAGGCGGAGCCGTCGATCATAGCGGCCACAGGGACGGGGACCACTCCTGCGAGTTTTTCGAGCGTTTCTGTCTCTCCCGACGCCGTGGTCGCTGCCGCGGCTGCTGCTGCCGCCGCCGCCGGTGGTTTCTGGGCGCCGACGATCTCCGGGAGGTTCATGCAGCAGCCGATGGGAGAGGCGTCGGCGGCTAGAGTTGGGAATTATCTTCCGATCGCGCAGGGACATCTGAATTTGCTGGCGTCGTTGTCTGGAGCTCCGGCATCGTCGGGGAGGAGAGACGACGATCCACCAACTGAAGGAGATGACTCAAAAGAGGGCGGCTTGGAGGTCGTCAATGACTTTGAGGGAGGCTTCTTGGGGTTCCATTCCTTGGGATTCGTAGTGGGCAATGAGGCTTTTTGGGGGTTCTAG 867 56.63 MKRVRSAALLYKLSLSTIFIAHSLSKHLVTATPAHTRSQTTNKTKTPNTGQRKRTSWWKKKFFFEGISKHMSTSDGAANGVTNGAIVDSQRQQQPGNGALAVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSVSPDAVVAAAAAAAAAAGGFWAPTISGRFMQQPMGEASAARVGNYLPIAQGHLNLLASLSGAPASSGRRDDDPPTEGDDSKEGGLEVVNDFEGGFLGFHSLGFVVGNEAFWGF* 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12936186 12943830 - Vvi10g689 Vvi10g689 771288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g689 288 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 71 181 - -
Vvi10g689 288 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 204 246 - -
Vvi10g689 288 MobiDBLite consensus disorder prediction 236 259 - -
Vvi10g689 288 MobiDBLite consensus disorder prediction 244 259 - -
Vvi10g689 288 Pfam TCP family transcription factor 107 180 IPR017887 -
Vvi10g689 288 MobiDBLite consensus disorder prediction 89 115 - -
Vvi10g689 288 MobiDBLite consensus disorder prediction 32 52 - -
Vvi10g689 288 ProSiteProfiles TCP domain profile. 107 161 IPR017887 -
Vvi10g689 288 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 204 246 IPR005333 GO:0003700
Vvi10g689 288 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 71 181 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g689 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - vvi:100253181 260.381
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0514 . . . . . Cme10g00793 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi12g1133 . 108 255 TCP Transcription Factor Family AT3G47620 59.4 1.2e-37 154.8
Vvi2g416 ECH 183 404 TCP Transcription Factor Family AT5G51910 54.8 3.0e-60 229.2
Vvi15g493 ECH 109 337 TCP Transcription Factor Family AT5G51910 53.1 2.6e-56 216.1
Vvi10g689 . 71 247 TCP Transcription Factor Family AT5G08330 50.6 6.5e-45 177.9
Vvi12g203 ECH 5 217 TCP Transcription Factor Family AT1G53230 51.3 2.4e-49 193.4
Vvi19g139 ECH 28 274 TCP Transcription Factor Family AT3G15030 57.1 3.6e-59 226.1
Vvi17g460 . 89 187 TCP Transcription Factor Family AT5G60970 81.0 1.5e-40 164.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13686 PF03634 TCP 5.30E-31 No_clan Vvi TF