Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g689 ATGAAGCGCGTGAGGAGCGCAGCTCTTCTCTACAAACTTTCTCTCTCTACCATCTTCATTGCTCATTCTCTCTCTAAACATCTTGTTACCGCAACACCAGCTCATACTCGGAGTCAGACTACCAACAAAACAAAAACACCAAACACCGGGCAAAGGAAGAGAACCAGTTGGTGGAAGAAGAAATTTTTTTTTGAGGGAATTTCAAAACATATGTCTACCTCAGATGGAGCGGCTAACGGCGTTACTAACGGCGCTATTGTTGACTCCCAGAGGCAGCAGCAGCCCGGTAACGGGGCCTTGGCGGTAAAGAAGCCGCCGGCCAAGGACCGCCACAGCAAAGTCGACGGTCGGGGCAGGCGTATCCGGATGCCGATCATCTGCGCCGCCAGGGTTTTCCAGTTGACGCGGGAGCTGGGGCACAAATCTGATGGTCAAACTATCGAGTGGCTGCTGCGGCAGGCGGAGCCGTCGATCATAGCGGCCACAGGGACGGGGACCACTCCTGCGAGTTTTTCGAGCGTTTCTGTCTCTCCCGACGCCGTGGTCGCTGCCGCGGCTGCTGCTGCCGCCGCCGCCGGTGGTTTCTGGGCGCCGACGATCTCCGGGAGGTTCATGCAGCAGCCGATGGGAGAGGCGTCGGCGGCTAGAGTTGGGAATTATCTTCCGATCGCGCAGGGACATCTGAATTTGCTGGCGTCGTTGTCTGGAGCTCCGGCATCGTCGGGGAGGAGAGACGACGATCCACCAACTGAAGGAGATGACTCAAAAGAGGGCGGCTTGGAGGTCGTCAATGACTTTGAGGGAGGCTTCTTGGGGTTCCATTCCTTGGGATTCGTAGTGGGCAATGAGGCTTTTTGGGGGTTCTAG 867 56.63 MKRVRSAALLYKLSLSTIFIAHSLSKHLVTATPAHTRSQTTNKTKTPNTGQRKRTSWWKKKFFFEGISKHMSTSDGAANGVTNGAIVDSQRQQQPGNGALAVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSVSPDAVVAAAAAAAAAAGGFWAPTISGRFMQQPMGEASAARVGNYLPIAQGHLNLLASLSGAPASSGRRDDDPPTEGDDSKEGGLEVVNDFEGGFLGFHSLGFVVGNEAFWGF* 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12936186 12943830 - Vvi10g689 Vvi10g689 771288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g689 288 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 71 181 - -
Vvi10g689 288 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 204 246 - -
Vvi10g689 288 MobiDBLite consensus disorder prediction 236 259 - -
Vvi10g689 288 MobiDBLite consensus disorder prediction 244 259 - -
Vvi10g689 288 Pfam TCP family transcription factor 107 180 IPR017887 -
Vvi10g689 288 MobiDBLite consensus disorder prediction 89 115 - -
Vvi10g689 288 MobiDBLite consensus disorder prediction 32 52 - -
Vvi10g689 288 ProSiteProfiles TCP domain profile. 107 161 IPR017887 -
Vvi10g689 288 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 204 246 IPR005333 GO:0003700
Vvi10g689 288 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 71 181 IPR005333 GO:0003700
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13686 PF03634 TCP 5.30E-31 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g689 K16221 - vvi:100253181 260.381