Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g718 ATGGAAAACACGACTTCTCATCACTGCACATGGGAAGGCATCACCTGCAATACGGAGGGACATGTCGTTCGAATTACCTATTCATATATCGATGGTAAAATGGTTGAGCTTAGCAAGTTGAAGTTTTCTTCATTTCCCAGCCTCCTCCATCTCTACGTTAGCCATTCTTCCATCTATGGTCGCATCCCAGATGAGATAGGTATGCTTACAAAACTCACTTACCTCCGTATATCTGAATGTGATGTTTATGGTGAGCTACCTGTTTCACTGGGTAACCTCACTCTATTAGAGGAATTGGATTTGGCTTATAACAATCTCTCTGGTGTCATCCCTTCCTCTCTTGGATATTTGAAGAATCTTATTCATTTGGATTTGAGTTTTAACTATGGGCTCTCTGGTGTCATCCCTCCCTCTCTTGGATATTTGAAGAATCTGAAATATTTAGACCTTAGCATCAATGAAATCAATGGTTCTATTCCTTCCCAAATTGGGAATTTGAAGAATCTTACTCATTTGTATTTGGTTTCTAACTCTCTTTCTGGTGTCATCCCTTCCCCCCTTGCCAATTTAAGCAATCTGGAATACTTATTCCTTAATTTCAATCGAATTAACGGTTCCATCCCTTCTGAAATCGGAAATTTAAAGAATTTGGTTCAATTACTCGACCTTAGTGACAACTTGATCCATGGAAAGATACCTTCCCAAGTCCAAAACTTGAAGCGCTTAGTATACTTGAATCTCTCCCACAATAAACTCTCTGGTTCCATTCCTACTCTTCTAATATATGACCACATAAGGCCATCACTTGATTTATCATACAATGATTTAGAGGGTCATATACCCTTTGAATTGCAGTCTAAATTTTCCCAAGGTTCATTTGACAATAACAAAGGTTTATGTGTATGGAACTATGATGGGAAGATTGCCTATGAAGATATCATTAAAGCAACAGAAGACTTTGACATCAAATATTGCATAGGTACAGGAGGCTATGGCAGTGTTTACAAGGCTCAATTGCCTACAGGCAATGTGGTAGCCCTGAAAAAGCTTCATGGATGGGAAACAGATGAGGCAACATACTTGAAAAGTTTTCAAAATGAGGTGCAAATATTATCAAAGATACGCCATCGAAATATTGTAAAACTTCAAGGCTATTGTCTACACAAAAGATGCATGTTTTTGATTTACAATTACATGGGAAGAGGAAGCTTGTATTGTGTATTGAGTAATGAAGTTGAAGCTTTGGAATTGGATTGGATTAAAAGGGTGAATGTGGTTAAAAGCATAGTCCATGCCGTATGCTACATGCATCATGATTGTACTCCACCCATTATTCATAGGGACATATCAAGCAATAATATTCTTTTGGACTCCAAATTGGATGCTTTTCTATCGGATTTTGGCACCTCTAGACTGCTACATCCTGATTCATCTAATCAAACCCTTCTTTCAGGCACTTATGGTTACATAGCACCAGAGCTTGCCTACACTATGGTCGTGACAGAAAAATGTGATGTTTACAGCTTTGGAGTGGTGGCGCTTGAGACAATGATGGGAAAGCATCCAGGAGAACTTTTCACCTTATTGTCTTCCTCATCAACTCAAAACATAATGCTCACTGATATGTTAGATTCACGTCTCCCATCTCCTCAAGATCAACAAGTTGCTAGAGATGTAGTTCTTGTGGTTTGGTTGGCACTCAAATGCATACATTCTAATCCGAGATCTCGTCCAACAATGCAACACATCTCATCAAAGCTTCTTACTCAATCACCATTTCTTGGCCCTTTTCATGGGATTTCACTTTGGCAATTGAATGCTCTAGAAATATAA 1833 38.68 MENTTSHHCTWEGITCNTEGHVVRITYSYIDGKMVELSKLKFSSFPSLLHLYVSHSSIYGRIPDEIGMLTKLTYLRISECDVYGELPVSLGNLTLLEELDLAYNNLSGVIPSSLGYLKNLIHLDLSFNYGLSGVIPPSLGYLKNLKYLDLSINEINGSIPSQIGNLKNLTHLYLVSNSLSGVIPSPLANLSNLEYLFLNFNRINGSIPSEIGNLKNLVQLLDLSDNLIHGKIPSQVQNLKRLVYLNLSHNKLSGSIPTLLIYDHIRPSLDLSYNDLEGHIPFELQSKFSQGSFDNNKGLCVWNYDGKIAYEDIIKATEDFDIKYCIGTGGYGSVYKAQLPTGNVVALKKLHGWETDEATYLKSFQNEVQILSKIRHRNIVKLQGYCLHKRCMFLIYNYMGRGSLYCVLSNEVEALELDWIKRVNVVKSIVHAVCYMHHDCTPPIIHRDISSNNILLDSKLDAFLSDFGTSRLLHPDSSNQTLLSGTYGYIAPELAYTMVVTEKCDVYSFGVVALETMMGKHPGELFTLLSSSSTQNIMLTDMLDSRLPSPQDQQVARDVVLVVWLALKCIHSNPRSRPTMQHISSKLLTQSPFLGPFHGISLWQLNALEI* 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13676297 13679717 - Vvi10g718 Vvi10g718 771317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g718 610 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 116 220 - -
Vvi10g718 610 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 221 300 - -
Vvi10g718 610 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 1 128 - -
Vvi10g718 610 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 300 610 - -
Vvi10g718 610 Gene3D Ribonuclease Inhibitor 219 300 IPR032675 -
Vvi10g718 610 SMART LRR_typ_2 239 263 IPR003591 -
Vvi10g718 610 SMART LRR_typ_2 93 116 IPR003591 -
Vvi10g718 610 SMART LRR_typ_2 190 214 IPR003591 -
Vvi10g718 610 SMART LRR_typ_2 142 166 IPR003591 -
Vvi10g718 610 ProSiteProfiles Leucine-rich repeat profile. 241 263 IPR001611 GO:0005515
Vvi10g718 610 SUPERFAMILY L domain-like 6 297 - -
Vvi10g718 610 Pfam Leucine Rich Repeat 96 115 IPR001611 GO:0005515
Vvi10g718 610 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Vvi10g718 610 SUPERFAMILY Protein kinase-like (PK-like) 304 587 IPR011009 -
Vvi10g718 610 ProSitePatterns Tyrosine protein kinases specific active-site signature. 444 456 IPR008266 GO:0004672|GO:0006468
Vvi10g718 610 SMART LRR_sd22_2 93 119 - -
Vvi10g718 610 SMART LRR_sd22_2 142 168 - -
Vvi10g718 610 SMART LRR_sd22_2 190 216 - -
Vvi10g718 610 Pfam Leucine rich repeat 123 179 IPR001611 GO:0005515
Vvi10g718 610 Gene3D Transferase(Phosphotransferase) domain 1 399 592 - -
Vvi10g718 610 PRINTS Leucine-rich repeat signature 96 109 - -
Vvi10g718 610 PRINTS Leucine-rich repeat signature 239 252 - -
Vvi10g718 610 Pfam Protein kinase domain 324 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g718 610 Gene3D Ribonuclease Inhibitor 133 218 IPR032675 -
Vvi10g718 610 ProSiteProfiles Protein kinase domain profile. 320 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g718 610 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 128 - -
Vvi10g718 610 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 221 300 - -
Vvi10g718 610 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 116 220 - -
Vvi10g718 610 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 300 610 - -
Vvi10g718 610 Gene3D Phosphorylase Kinase; domain 1 302 398 - -
Vvi10g718 610 Gene3D Ribonuclease Inhibitor 1 132 IPR032675 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76021 PF00069 Pkinase 5.40E-44 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g718 - - vri:117923909 880.167