Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g729 ATGGGTCGTGGAAAGATAGCAATCAGGAGGATTGAGAACCAAACAAGCAGGCAAGTCACCTTCTCAAAGCGCCGAGCAGGGCTGTTGAAGAAAACCCATGAACTTTCTGTGCTTTGTGATGTCCAGATCGGGCTCATCATCTTCTCAAGCACTGGGAAGATGTGCGAGTACTGCACTGAGCCATGGAGAATGGATCAGATAATTGAAAGGTACCAGAAGGTCACAGGGACTCGTATTCCAGAGCATGATAGCCGGGAACAAATATATAATGAGTTAACGAGGATGAGAAAAGAAACCAGTCGTCTTCAACGGAGTATGAGAGGCTACACAGGTGAGGATTTGAGTTCTATACCGTATGAAGACTTGGATCAACTTGAACAACAACTGGAACACTCAGCTGATAAAGTTCGAGCTAGGAAGAATCAACTGTTGCAGCAGCAGCTTGATAATTTACGCAGGAAGGAGCAAATGTTGGAAGAGGAAAACAGCAAGATGTACCACTGGATTAAGGAGAACCGAGCAGCCTTAGATTATCAACAGGCAGCCATAGAAGTGAAACCAGTGGAACATCATCACCAAATGCTTGATCAAGCTGAAACTTTGACTGGTGAGGTTTCACAAGGAGGGTCTGAAGTTTGGAGAAGAAGGCATTTCTAA 657 44.9 MGRGKIAIRRIENQTSRQVTFSKRRAGLLKKTHELSVLCDVQIGLIIFSSTGKMCEYCTEPWRMDQIIERYQKVTGTRIPEHDSREQIYNELTRMRKETSRLQRSMRGYTGEDLSSIPYEDLDQLEQQLEHSADKVRARKNQLLQQQLDNLRRKEQMLEEENSKMYHWIKENRAALDYQQAAIEVKPVEHHHQMLDQAETLTGEVSQGGSEVWRRRHF* 219
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 14127880 14133989 - Vvi10g729 Vvi10g729 771328
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g729 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi10g729 218 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Vvi10g729 218 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Vvi10g729 218 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi10g729 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi10g729 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi10g729 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi10g729 218 PANTHER PROTEIN TRANSPARENT TESTA 16-LIKE ISOFORM X1 1 203 - -
Vvi10g729 218 Coils Coil 119 164 - -
Vvi10g729 218 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vvi10g729 218 Pfam K-box region 81 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi10g729 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 203 - -
Vvi10g729 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi10g729 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi10g729 218 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13688 PF01486 K-box 2.20E-25 No_clan Vvi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g729 - - vvi:100244209 385.956