Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi10g729 | ATGGGTCGTGGAAAGATAGCAATCAGGAGGATTGAGAACCAAACAAGCAGGCAAGTCACCTTCTCAAAGCGCCGAGCAGGGCTGTTGAAGAAAACCCATGAACTTTCTGTGCTTTGTGATGTCCAGATCGGGCTCATCATCTTCTCAAGCACTGGGAAGATGTGCGAGTACTGCACTGAGCCATGGAGAATGGATCAGATAATTGAAAGGTACCAGAAGGTCACAGGGACTCGTATTCCAGAGCATGATAGCCGGGAACAAATATATAATGAGTTAACGAGGATGAGAAAAGAAACCAGTCGTCTTCAACGGAGTATGAGAGGCTACACAGGTGAGGATTTGAGTTCTATACCGTATGAAGACTTGGATCAACTTGAACAACAACTGGAACACTCAGCTGATAAAGTTCGAGCTAGGAAGAATCAACTGTTGCAGCAGCAGCTTGATAATTTACGCAGGAAGGAGCAAATGTTGGAAGAGGAAAACAGCAAGATGTACCACTGGATTAAGGAGAACCGAGCAGCCTTAGATTATCAACAGGCAGCCATAGAAGTGAAACCAGTGGAACATCATCACCAAATGCTTGATCAAGCTGAAACTTTGACTGGTGAGGTTTCACAAGGAGGGTCTGAAGTTTGGAGAAGAAGGCATTTCTAA | 657 | 44.9 | MGRGKIAIRRIENQTSRQVTFSKRRAGLLKKTHELSVLCDVQIGLIIFSSTGKMCEYCTEPWRMDQIIERYQKVTGTRIPEHDSREQIYNELTRMRKETSRLQRSMRGYTGEDLSSIPYEDLDQLEQQLEHSADKVRARKNQLLQQQLDNLRRKEQMLEEENSKMYHWIKENRAALDYQQAAIEVKPVEHHHQMLDQAETLTGEVSQGGSEVWRRRHF* | 219 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 14127880 | 14133989 | - | Vvi10g729 | Vvi10g729 | 771328 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi10g729 | 218 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi10g729 | 218 | SUPERFAMILY | SRF-like | 2 | 80 | IPR036879 | GO:0003677|GO:0046983 | |
Vvi10g729 | 218 | Gene3D | - | 13 | 100 | IPR036879 | GO:0003677|GO:0046983 | |
Vvi10g729 | 218 | ProSiteProfiles | K-box domain profile. | 85 | 175 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Vvi10g729 | 218 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi10g729 | 218 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi10g729 | 218 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi10g729 | 218 | PANTHER | PROTEIN TRANSPARENT TESTA 16-LIKE ISOFORM X1 | 1 | 203 | - | - | |
Vvi10g729 | 218 | Coils | Coil | 119 | 164 | - | - | |
Vvi10g729 | 218 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Vvi10g729 | 218 | Pfam | K-box region | 81 | 169 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Vvi10g729 | 218 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 203 | - | - | |
Vvi10g729 | 218 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi10g729 | 218 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi10g729 | 218 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13688 | PF01486 | K-box | 2.20E-25 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi10g729 | - | - | vvi:100244209 | 385.956 |