Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g757 ATGGAGCAGGATTTGAGCAAGCTGGATGTGACAACACTACATCCGCTCTCACCTGAAGTTATTTCTCGTCAGGCTACTATAAATATCGGCACAATTGGTCATGTGGCTCATGGGAAGTCCACAGTTGTAAAAGCTATATCTGGTGTTCAGACTGTTCGTTTTAAAAATGAGCTGGAGCGCAACATTACTATCAAACTTGGATATGCAAATGCCAAGATATACAAATGTGAAGATGAACGGTGCCCTCGACCCATGTGCTACAAGGCCTATGGAAGTGGAAAGGAAGATAGTCCTCTCTGTGATGTGCCTGGGTTTGAAAACTGCAGGATGAAGTTGCTACGACATGTGTCCTTTGTAGATTGCCCGGGGCATGATATTCTCATGGCTACAATGCTTAATGGAGCGGCAATTATGGATGGGGCATTACTTCTTATAGCTGCCAATGAAAGCTGTCCACAGCCGCAAACTGCTGAGCATCTGGCTGCTGTTGAAATAATGCGTCTTCAGCATATTATAATCCTTCAAAATAAAGTTGATCTCATTCAGGAAAATGTAGCCATCAACCAGCATGAAGCAATTCAGAAATTTATTCAGGGAACTGTTGCAGATGGTGCACCAGTGGTACCAATTTCTGCGCAGCTGAAGTATAATATTGATGTTGTGTGTGAATATATTGTGAAAAAGATCCCCATTCCAGAGAGAGACTTTACTTCACCACCAAATATGATTGTGATTCGGTCATTTGATGTCAATAAGCCTGGGTTTGAGGTTGATGAGATAAGAGGTGGTGTTGCTGGTGGAAGCATTCTCAGGGGTGTTTTGAAAGTGAATCAGTTTATTGAGGTTCGTCCTGGGATTGTTGTTAAAGATGAGAATGGGAACATCAAATGCACACCAATATATTCTAGGATAGTCTCATTGTATGCTGAACAAAATGAGCTGCAATTTGCTGTGCCTGGAGGCCTCATTGGGGTTGGCACAACCATGGACCCCACTTTAACACGAGCTGATCGCCTGGTGGGGCAAGTTCTTGGAGAGGTTGGATCCCTCCCTGATGTTTTTGTTGAACTAGAGGTAAACTTCTTCCTGCTGCGACGGCTTATTGGTGTAAGGACTAAGGGAACAGAAAAGCAGGGAAAGGTTTCAAAGCTGACTAAGGGAGAGATCCTCATGTTGAATATTGGGTCCATGTCTACAGGTGCTCGAGTCCTTGCTGTTAGGAATGATTTGGCAAAGTTGCAACTCACATCTCCTGTGTGCACCAGCAGAGGGGAGAAGATTGCACTTAGTCGGAGAGTTGAGAAGCATTGGCGTCTGATTGGATGGGGCCAAATTCAAGCTGGAACCACTCTCGATGTCCCACCCAGCCCCATTTGA 1377 44.66 MEQDLSKLDVTTLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMCYKAYGSGKEDSPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTAEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERDFTSPPNMIVIRSFDVNKPGFEVDEIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDENGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPDVFVELEVNFFLLRRLIGVRTKGTEKQGKVSKLTKGEILMLNIGSMSTGARVLAVRNDLAKLQLTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQAGTTLDVPPSPI* 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15216731 15223544 + Vvi10g757 Vvi10g757 771356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g757 458 Gene3D Translation factors 351 450 - -
Vvi10g757 458 CDD eIF2_gamma 27 234 IPR044128 GO:0005525
Vvi10g757 458 Gene3D Translation factors 235 350 - -
Vvi10g757 458 Pfam Elongation factor Tu GTP binding domain 26 230 IPR000795 GO:0003924|GO:0005525
Vvi10g757 458 PRINTS GTP-binding elongation factor signature 28 41 IPR000795 GO:0003924|GO:0005525
Vvi10g757 458 PRINTS GTP-binding elongation factor signature 117 127 IPR000795 GO:0003924|GO:0005525
Vvi10g757 458 PRINTS GTP-binding elongation factor signature 133 144 IPR000795 GO:0003924|GO:0005525
Vvi10g757 458 PRINTS GTP-binding elongation factor signature 171 180 IPR000795 GO:0003924|GO:0005525
Vvi10g757 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 240 IPR027417 -
Vvi10g757 458 CDD eIF2_gamma_III 351 445 IPR015256 -
Vvi10g757 458 SUPERFAMILY Translation proteins 234 348 IPR009000 -
Vvi10g757 458 Pfam Elongation factor Tu domain 2 262 344 IPR004161 GO:0005525
Vvi10g757 458 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 24 233 IPR000795 GO:0003924|GO:0005525
Vvi10g757 458 Pfam Initiation factor eIF2 gamma, C terminal 356 445 IPR015256 -
Vvi10g757 458 CDD eIF2_gamma_II 235 348 IPR044127 GO:0000049
Vvi10g757 458 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 349 446 IPR009001 -
Vvi10g757 458 Gene3D - 24 234 IPR027417 -
Vvi10g757 458 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 1 457 - -
Vvi10g757 458 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 457 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g757 K03242 - vvi:100252857 908.286