Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g76 ATGCTGGACAATGGGTTGGTGAAACTCACAATACTGAGGCCACAAGGGTTCTTGACTGGCATCAAGTATGGAGGAATGGACAATCTTTTAGACCTCAAGTCAAGTGAAACTAACAGAGGGTATTGGGACATCAACTGGAGCTTGCCTGGAGGCCAGGACAGATACCAATTAATCAAAGGGGATGATTATAGTGTTGTTCATTCCAGTAATGAGAGTATAGAGGTTTCATTCAGGAGTACTTATGATCCATCCACTTCAGGCATCAGACTGCCACTCAGTATTGACTTGAGGTATATATTGAGGGCTGGTGTTTCAGGCTTCTACTGCTATGCAATATATGAGTTACCCCCAGGATGCCGCGCTTTTGACGTTGCTCAGACAAGGATGGTGTTCAAGTTGAGACAAGAAAGGTTCCACTACATGGCCATCTCAGATGAGAAGCAGAGGGTAATGCCCATGCCAGAGGATCTTCTTCAGAACAGAGGCAAAAAGCTGATTGTACCTGAATCAGTTCTGCTTGTGAACCCCATTAATCCCCATCTCAAAGGCGAGGTTGATGATAAGTACCAGTACTCCATGGACAACAAGGATGGAGGAGTCCATGGCTGGATAAGTTCTAAGCCTGTTGTTGGATTCTGGGTCATCTTCCCCAGCCATGAGTTTCGTAACGGGGGGCCTACCAAGCAAAACCTCACTGTCCACACTGGTCCTGCTTGCCTTGCTATGTTCCATGGAACTCATTACATTGGAGAGGATATAATGGCTCATTTCAAAGACGGGGAGACATGGAGGAAGGTCTTTGGCCCCTTCTTCGTATACCTTAATTCTACCCCAAATATATCAAATGCACACAACTTATGGCTAGATGCTAAGAAACAGAGGCTGTTGGAGGAGGCAGCATGGCCGTATGATTTTGTCTCATCACCCTATTACTTTACTGCTAAAGAACGCGGTTCAGTTTCAGGGAGACTGCTGGTCCAAGACAGGTTTGTTTCTAGTTCTCTTGTCCCTGCTAAGTATGGATATGTTGGTCTATCAGTTGCAACAACTGAAGGATCCTGGCAAACAGAAAGCAAGGGTTATCAATTCTGGGTGCAAACCGATTTGAATGGAAACTTCACCATCAAGAATGTTATCCCAGGAGCTTATGGACTTCATGGCTGGGTTCCTGGTTTCATTGGTGATTACCTTGATAATGCACGCATTACCGTCTCCTCAGGGTCACAGAAACAACTTGGCAATTTGACCTATGTTCCCATCAGAGATGGTCCAACTGTATGGGAGATCGGATTCCCAGATCGCACAACTATTGGTTTCTATGTTCCTGATGTGAATCCAATGTATGCCAACAAGTTATTTCTGAACAGCCCTGAGAAGTTCAGGCAGTATGGCTTGTGGGACAGATACACTGATCTAAACCCCAAATCTGATCAAGTTTTCACAATAGGCGTCAGTGATCCAAAGAAAGACTGGTTCTTTGCTCATGTAGACAGGAGAGGAGAAGCTAATAAGTATCTTCCAACACAATGGGAAATCAAGTTTAATCTTGATTCAGTAACCAGTGGGATTTACAAGCTGAGGTTGGCCATGGCATCAGCAACCCGCGCTGATCTTAAGGTCCACATCAATGACATGGATGTGAAGCATCTAGTGTTCCAGGTGCAGAACTTAGGAATGGACAACACAGTTTGTCGACATGGAATTCATGGACTGTACCGGCTTTACAGCATTGATATTTCTTCGTCTTTGTTGGTTAAGGGGGACAACTCCTTATTTCTCACACAGGCCAGGGGAGGAGATGCAATTTGTGGAGTCCTCTATGATTATCTTAGGCTAGAAGCTCCTGCAAGTTCATAG 1857 44.96 MLDNGLVKLTILRPQGFLTGIKYGGMDNLLDLKSSETNRGYWDINWSLPGGQDRYQLIKGDDYSVVHSSNESIEVSFRSTYDPSTSGIRLPLSIDLRYILRAGVSGFYCYAIYELPPGCRAFDVAQTRMVFKLRQERFHYMAISDEKQRVMPMPEDLLQNRGKKLIVPESVLLVNPINPHLKGEVDDKYQYSMDNKDGGVHGWISSKPVVGFWVIFPSHEFRNGGPTKQNLTVHTGPACLAMFHGTHYIGEDIMAHFKDGETWRKVFGPFFVYLNSTPNISNAHNLWLDAKKQRLLEEAAWPYDFVSSPYYFTAKERGSVSGRLLVQDRFVSSSLVPAKYGYVGLSVATTEGSWQTESKGYQFWVQTDLNGNFTIKNVIPGAYGLHGWVPGFIGDYLDNARITVSSGSQKQLGNLTYVPIRDGPTVWEIGFPDRTTIGFYVPDVNPMYANKLFLNSPEKFRQYGLWDRYTDLNPKSDQVFTIGVSDPKKDWFFAHVDRRGEANKYLPTQWEIKFNLDSVTSGIYKLRLAMASATRADLKVHINDMDVKHLVFQVQNLGMDNTVCRHGIHGLYRLYSIDISSSLLVKGDNSLFLTQARGGDAICGVLYDYLRLEAPASS* 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 872794 876237 + Vvi10g76 Vvi10g76 770675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g76 618 Pfam Rhamnogalacturonate lyase family 2 185 IPR010325 -
Vvi10g76 618 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 616 - -
Vvi10g76 618 SUPERFAMILY Starch-binding domain-like 312 412 IPR013784 GO:0030246
Vvi10g76 618 Pfam Polysaccharide lyase family 4, domain II 342 411 IPR029413 -
Vvi10g76 618 Gene3D - 1 289 IPR014718 GO:0030246
Vvi10g76 618 CDD RGL4_N 1 277 - -
Vvi10g76 618 CDD RGL4_C 427 613 - -
Vvi10g76 618 Gene3D - 313 413 - -
Vvi10g76 618 Gene3D - 423 613 - -
Vvi10g76 618 SUPERFAMILY Galactose mutarotase-like 8 278 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vvi10g76 618 CDD RGL4_M 316 415 IPR029413 -
Vvi10g76 618 Pfam Polysaccharide lyase family 4, domain III 425 612 IPR029411 -
Vvi10g76 618 PANTHER POLYSACCHARIDE LYASE FAMILY 4 PROTEIN 3 616 - -
Vvi10g76 618 SUPERFAMILY Galactose-binding domain-like 422 613 IPR008979 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g76 K18195 - vvi:100260538 1282.7