Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi10g776 | ATGCCGAAGAGCTTTGCCTCAGAGTCACGGTCTCCACCTTCCCTCCAGTCCATCAAATCACTGCCTGTTGGTTTTAGGTTTACAGAGATGGACCAGGCTAGTGATGATACACCCTATGATAGGAAAACCATAGCCATTGATGAAAGACCTTCGGTGGGTGATGAAGACTTGGGTTTTGTGGCTCCTCATTTGCGTTCAGTGGCACCATCTCGATCTGAATTCAGGTGGGCCGATACCACATCCTATGCTGCAAAGAAGAAGCTTCAATCTTGGTTTCTACTTCCAAATGGAAACTGGGAGCTGGGCAAGATATTGTCTACTTCAGGGACTGAGACTGTTATTTCACTGCCTGAGGGAAAAGTTTTAAAGGTGAATACTGACAGCCTGTTACCTGCAAACCCCGATATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGGTGTTGTACAATCTTCAACATAGATACAATCAAGATATGATTTATACCAAAGCAGGACCAGTTCTGGTTGCCATCAATCCCTTTAAGGAAGTTCCGTTGTATGGAAATGATTATATTGATGCGTATAAGCGTAAATCAATTGAGAGCCCACATGTCTATGCCATCACTGACACAGCCATCCGTGAAATGAGACGAGATGAAGTAAATCAATCTATTATTATCAGTGGTGAAAGTGGAGCAGGGAAAACTGAGACGGCAAAGATAGCAATGCAATATTTGGCTGCCCTTGGTGGCGGTAGCGGAATAGAATATGAGATATTGAAAACAAATCCTATCTTGGAGGCCTTTGGTAATGCAAAAACATCCAGAAATGACAACTCAAGTCGCTTTGGAAAGCTGATTGAGATTCACTTTAGTGAAACTGGGAAAATATCGGGTGCCAAGATTCAAACCTTTTTACTTGAAAAGTCTAGAGTGGTCCAATGTGCAGAAGGAGAGAGGTCATATCATATATTTTATCAACTCTGTGCTGGAGCTCCACCAGCTCTTAGAGAGAAATTGGATTTGAAGAGTGCATATGAGTATAAGTATTTGAAGCAGAGCAATTGCTACTCAATTACTGGGGTTGATGATGCTGAGCAATTTCGCATTGTTGTGGAAGCTTTGGATATTGTTCATGTCAGCAAAGAGGACCAAGAGAGTGTATTTGCCATGCTTGCTGCAGTTTTGTGGATGGGAAATGTCTCGTTTACTGTGACTGATAATGAAAACCATGTTGAAGCTGTGGCAGATGAAGGTCTGACCAATGTTGCTAAGTTGATTGGATGTGATGTTGGGGATCTAAAGCAAGCTTTATCTACTCGCAAGATGAGAGTTGGAAATGATAATATTATTCAAAAGCTAACTCTATCGCAGGCCATTGACACAAGAGATGCTTTGGCGAAATCAATTTATGCTTGTTTATTTGACTGGCTGGTCGAACAAATCAACAAGTCACTTGCTGTAGGAAAACGGCGTACTGGCAGATCCATTAGCATTCTTGATATCTATGGATTTGAATCATTCGATAGAAATAGCTTTGAGCAGTTCTGCATAAATTATGCAAATGAGAGGTTGCAGCAGCACTTTAACCGTCATTTATTCAAGTTAGAGCAAGAGGAATATATCCAAGATGGAATTGACTGGAATAGAGTTGATTTTGAGGACAATCAAGACTGTCTAAATCTTTTTGAGAAGAAACCATTAGGTCTATTGTCTCTGTTAGACGAGGAGTCCACCTTCCCTAATGGCACAGACTTGACCTTTGCAAACAAGCTTAAGCAGCATCTGAATTCTAATTCTTGTTTCAGAGGAGAACGAGGAAAAGCTTTTAGTGTCTGTCATTATGCAGGAGAGGTCATGTATGATACCACTGGGTTTCTAGAGAAGAACAGAGATTTGTTACACTTGGATTCCATTCAACTTCTATCTTCTTGCACATGCCATCTGCCCCAAATCTTTGCATCCAATATGCTTACTCAATCTGAGAAGCCTGTTGTTGGCCCTTTATATAAGTCAGGTGGAGCGGATTCCCAGAAGCTAAGTGTTGCAACAAAATTTAAGGGTCAACTGTTCCAACTGATGCAGCGTCTTGAGACCACAACACCACATTTCATTCGTTGCATTAAGCCCAACAATTTTCAGTCTCCTGGAAACTATGACCAAGGACTTGTACTGCAGCAACTAAGATGTTGTGGAGTCCTAGAAGTAGTTAGAATATCGAGGTCGGGCTTTCCAACTCGGATGTCTCATCAGAAGTTTGCTAGAAGGTATGGTTTTCTTCTACTGGAGGGTGTTGCATCTCAAGATCCACTTAGTGTTTCAGTTGCAATCCTTCATCAGTTCAATATTCTGCCTGAGATGTATCAAGTTGGCTACACAAAATTGTTTTTCCGAACGGGACAGATTGGTGTCCTTGAGGATACAAGAAACCACACTCTCCATGGCATTTTACGTGTTCAAAGTTGCTTCAGAGGTCACCAAGCTCGTTGTCATCTCAGGGATCTTAGGGGAGGAATTGCGACTCTTCAGTCATTTGTTCGTGGTGAAAAAACCAGAAAGGAATTTGCAATCTTACTGCAGAGACACAGAGCTGCTGTGGTTATACAAAAGCAGATTAGAAGCAGGATCGGCCGGAAAAAATTCATGAGCATTTATGATGCATCCATAGTGATACAATCAGTTATTCGTGGCTGGTTAGTCCGAAGGTGCTCAGGAGATCTTGGGTTACTCACTGTTGGCGGCAGAAAGGATAAAGAGTCAGATGAAGTGCTGGTAAAGTCATCATTCCTTGCTGAACTACAGCGCCGAGTTCTGAAAGCTGAGGCTGCTCTGAGAGAGAAAGAAGAGGAGAACGACATCCTCCACCAACGCCTGCAACAGTATGAGAATCGCTGGTCCGAATATGAGCTGAAAATGAAGTCCATGGAAGAAGTGTGGCAGAAACAAATGAGGTCTCTACAATCCAGCCTCTCCATTGCAAAGAAGAGCCTAGCCATGGATGATTCCAGGAGAAACTCTGATGCGTCGGTCAATCTAACCGATGACAGGGACTCCAGCTGGGACACAGGCAGCAACTTCAGGGGCCAGGAGAGCAATGGGATGAGACCAATGAGTGCAGGCCTGACGGTCATAAGCCGGATGGCTGAAGAATTCGAGCAGCGGAGTCAAGTGTTTGGGGACGATGCCAAGTTCCTGGTGGAAGTAAAATCCGGTCAAACTGAGGCAAGCCTCAACCCAGACCGGGAACTCAGACGGTTGAAGCAGATGTTTGAAGCTTGGAAGAAGGATTACGGGTCAAGGCTCCGGGAAACAAAGGTGATATTGCAGAAGCTGGGAAACGAAGAAGGGAGTGGTGATAAAGCGAGAAAGAAATGGTGGGTGAGGAGGAACAGCTCCAGGTTCAATTAA | 3408 | 43.49 | MPKSFASESRSPPSLQSIKSLPVGFRFTEMDQASDDTPYDRKTIAIDERPSVGDEDLGFVAPHLRSVAPSRSEFRWADTTSYAAKKKLQSWFLLPNGNWELGKILSTSGTETVISLPEGKVLKVNTDSLLPANPDILDGVDDLMQLSYLNEPSVLYNLQHRYNQDMIYTKAGPVLVAINPFKEVPLYGNDYIDAYKRKSIESPHVYAITDTAIREMRRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGAKIQTFLLEKSRVVQCAEGERSYHIFYQLCAGAPPALREKLDLKSAYEYKYLKQSNCYSITGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWMGNVSFTVTDNENHVEAVADEGLTNVAKLIGCDVGDLKQALSTRKMRVGNDNIIQKLTLSQAIDTRDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWNRVDFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFRGERGKAFSVCHYAGEVMYDTTGFLEKNRDLLHLDSIQLLSSCTCHLPQIFASNMLTQSEKPVVGPLYKSGGADSQKLSVATKFKGQLFQLMQRLETTTPHFIRCIKPNNFQSPGNYDQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLEGVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNHTLHGILRVQSCFRGHQARCHLRDLRGGIATLQSFVRGEKTRKEFAILLQRHRAAVVIQKQIRSRIGRKKFMSIYDASIVIQSVIRGWLVRRCSGDLGLLTVGGRKDKESDEVLVKSSFLAELQRRVLKAEAALREKEEENDILHQRLQQYENRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAMDDSRRNSDASVNLTDDRDSSWDTGSNFRGQESNGMRPMSAGLTVISRMAEEFEQRSQVFGDDAKFLVEVKSGQTEASLNPDRELRRLKQMFEAWKKDYGSRLRETKVILQKLGNEEGSGDKARKKWWVRRNSSRFN* | 1136 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 16417753 | 16444387 | - | Vvi10g776 | Vvi10g776 | 771375 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi10g776 | 1135 | ProSiteProfiles | IQ motif profile. | 814 | 841 | IPR000048 | GO:0005515 | |
| Vvi10g776 | 1135 | SMART | MYSc_2a | 132 | 811 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi10g776 | 1135 | CDD | MYSc_Myo8 | 152 | 798 | IPR036022 | - | |
| Vvi10g776 | 1135 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Vvi10g776 | 1135 | ProSiteProfiles | Myosin motor domain profile. | 138 | 810 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi10g776 | 1135 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 85 | 134 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi10g776 | 1135 | Gene3D | - | 506 | 700 | - | - | |
| Vvi10g776 | 1135 | Gene3D | - | 743 | 811 | - | - | |
| Vvi10g776 | 1135 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 381 | 678 | - | - | |
| Vvi10g776 | 1135 | MobiDBLite | consensus disorder prediction | 1012 | 1036 | - | - | |
| Vvi10g776 | 1135 | ProSiteProfiles | IQ motif profile. | 835 | 864 | IPR000048 | GO:0005515 | |
| Vvi10g776 | 1135 | Pfam | IQ calmodulin-binding motif | 886 | 902 | IPR000048 | GO:0005515 | |
| Vvi10g776 | 1135 | Pfam | IQ calmodulin-binding motif | 816 | 833 | IPR000048 | GO:0005515 | |
| Vvi10g776 | 1135 | Pfam | IQ calmodulin-binding motif | 862 | 881 | IPR000048 | GO:0005515 | |
| Vvi10g776 | 1135 | Gene3D | Kinesin motor domain | 141 | 739 | IPR036961 | - | |
| Vvi10g776 | 1135 | SMART | iq_5 | 811 | 833 | IPR000048 | GO:0005515 | |
| Vvi10g776 | 1135 | SMART | iq_5 | 834 | 856 | IPR000048 | GO:0005515 | |
| Vvi10g776 | 1135 | SMART | iq_5 | 883 | 905 | IPR000048 | GO:0005515 | |
| Vvi10g776 | 1135 | SMART | iq_5 | 860 | 882 | IPR000048 | GO:0005515 | |
| Vvi10g776 | 1135 | Gene3D | - | 863 | 904 | - | - | |
| Vvi10g776 | 1135 | Gene3D | - | 815 | 862 | - | - | |
| Vvi10g776 | 1135 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 112 | 858 | IPR027417 | - | |
| Vvi10g776 | 1135 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Vvi10g776 | 1135 | PANTHER | MYOSIN | 66 | 1135 | - | - | |
| Vvi10g776 | 1135 | ProSiteProfiles | IQ motif profile. | 861 | 888 | IPR000048 | GO:0005515 | |
| Vvi10g776 | 1135 | PRINTS | Myosin heavy chain signature | 168 | 187 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi10g776 | 1135 | PRINTS | Myosin heavy chain signature | 222 | 247 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi10g776 | 1135 | PRINTS | Myosin heavy chain signature | 264 | 291 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi10g776 | 1135 | PRINTS | Myosin heavy chain signature | 496 | 524 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi10g776 | 1135 | PRINTS | Myosin heavy chain signature | 549 | 577 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi10g776 | 1135 | MobiDBLite | consensus disorder prediction | 1003 | 1036 | - | - | |
| Vvi10g776 | 1135 | PANTHER | P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN | 66 | 1135 | - | - | |
| Vvi10g776 | 1135 | Gene3D | - | 320 | 379 | - | - | |
| Vvi10g776 | 1135 | Pfam | Myosin head (motor domain) | 140 | 798 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi10g776 | 1135 | Coils | Coil | 930 | 978 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi10g776 | - | K10357 | vvi:100254832 | 2224.9 |