Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g788 ATGAGAATTGGGGATTTGAAGATGACTTCGAATGGCACCTGGGACAGGGATGGGCAGGCTTTCAGCTTGATTAGTGAGATGCGCTTAAACGAGGTGTTTAATTTCAGTTATTCGTTTAGTAAGGAGGAGAGCTATATCAATTACTCTATTTATAATTCTTCAAAAATATGCAGATTCGTGCTGGATGTGTCAGGGCAGATTAAACAAATGTCATGGCTTGAAGCCTCTCATCAATGGCATATGTTTTGGTTTCAACCAAAAACGCAATGTGAGGTTTATGCTTACTGTGGGCCTTTTGGAATCTGTCATGACCATGCAGTCGATAGATTCTGTGAATGTTTGCCAGGTTTTGAACCTGGCTTCCCTAATAACTGGAACTTGAACGACACATCTGGAGGGTGTGTGAGGAAAGCAGATTTGCAGTGTGGCAATAGTACTCATGATAATGGGGAGAGAGACCAGTTTTATCGGGTGTCTAATGTGAGGCTGCCAGATTATCCACTAACACTCCCAACGAGTGGTGCCATGCAGTGCGAGTCAGATTGCCTAAATAACTGCTCTTGCTCTGCTTATTCTTACTACATGGAGAAGTGTACAGTATGGGGTGGAGATCTTCTAAACTTGCAACAGCTATCAGATGACAACAGTAATGGTCAAGATTTCTATCTCAAACTTGCGGCCTCTGAGCTAAGTGGGAAAGGTAATAAAATTTCAAGCAGCAAGTGGAAGGTATGGCTAATTGTTACACTGGCTATTTCCGTAACTTCAGCCTTTGTCATTTGGGGGATACGGAGAAGGCTAAGAAGAAAAGGGGAAAATTTGTTACTATTTGATTTAAGTAACAGCTCAGTAGATACCAACTATGAACTTAGTGAGACAAGTAAACTTTGGAGCGGCGAGAAGAAGGAAGTTGATTTGCCAATGTTCAGTTTTGCGAGTGTATCTGCTGCTACCAATAACTTCTCTATTGAAAATAAACTAGGAGAGGGTGGTTTTGGACCTGTTTACAAGGGAAAGTCACAAAAAGGGTATGAGGTAGCTGTGAAGAGGCTTTCAAAAAGATCTGGACAGGGATGGGAGGAGTTAAAAAATGAGGTCATGCTCATAGCCAAGCTGCAACATAAGAATCTTGTGAAGCTGTTCGGCTACTGCATTGAGAAAGATGAGAAGATATTGATTTATGAGTATATGCCCAACAAAAGCTTGGATTTCTTCCTATTTGATCCTACAAAACATGGGATTCTGAATTGGAAGACACGGGTTCACATCATTAAAGGGGTTGCTCAGGGACTTCTTTATCTACATCAGTACTCCAGATTGAGGATTATTCATCGAGATTTGAAGGCTAGCAACATTCTTCTGGATAAGGATATGAATCCTCAAATATCAGATTTTGGAATGGCAAGAATATTTGGAGGCAACGAATCAAAAGCAACAAATCATATAGTTGGGACTTACGGCTATATGTCCCCTGAGTATGCTTTGGAAGGTCTTTTCTCCACTAAATCTGATGTCTTTAGCTTTGGGGTCTTGTTACTGGAGATTTTGAGTGGCAAGAAGAATACTGGATTTTACCAAACCGACTCGCTCAATCTTCTTGGATATGCATGGGATCTGTGGAAAGACAGTAGAGGGCAGGAGTTGATGGATCCAGGGTTGGAAGAGACATTGCCAACACACATTCTGCTGAGGTACATCAATATAGGCCTTCTTTGTGTTCAAGAAAGTGCAGATGATAGGCCTACCATGTCTGATGTTGTCTCAATGCTTGGCAATGAAAGTGTACGTTTACCTTCTCCAAAACAACCGGCATTTTCAAATCTGAGAAGTGGGGTGGAACCACATATATCCCAAAACAAGCCTAAAATTTGTTCCTTAAATGGTGTGACACTTTCAGTTATGGAAGCACGATAA 1914 41.33 MRIGDLKMTSNGTWDRDGQAFSLISEMRLNEVFNFSYSFSKEESYINYSIYNSSKICRFVLDVSGQIKQMSWLEASHQWHMFWFQPKTQCEVYAYCGPFGICHDHAVDRFCECLPGFEPGFPNNWNLNDTSGGCVRKADLQCGNSTHDNGERDQFYRVSNVRLPDYPLTLPTSGAMQCESDCLNNCSCSAYSYYMEKCTVWGGDLLNLQQLSDDNSNGQDFYLKLAASELSGKGNKISSSKWKVWLIVTLAISVTSAFVIWGIRRRLRRKGENLLLFDLSNSSVDTNYELSETSKLWSGEKKEVDLPMFSFASVSAATNNFSIENKLGEGGFGPVYKGKSQKGYEVAVKRLSKRSGQGWEELKNEVMLIAKLQHKNLVKLFGYCIEKDEKILIYEYMPNKSLDFFLFDPTKHGILNWKTRVHIIKGVAQGLLYLHQYSRLRIIHRDLKASNILLDKDMNPQISDFGMARIFGGNESKATNHIVGTYGYMSPEYALEGLFSTKSDVFSFGVLLLEILSGKKNTGFYQTDSLNLLGYAWDLWKDSRGQELMDPGLEETLPTHILLRYINIGLLCVQESADDRPTMSDVVSMLGNESVRLPSPKQPAFSNLRSGVEPHISQNKPKICSLNGVTLSVMEAR* 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16787173 16794026 - Vvi10g788 Vvi10g788 771387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g788 637 SUPERFAMILY Hairpin loop containing domain-like 152 209 - -
Vvi10g788 637 CDD STKc_IRAK 327 590 - -
Vvi10g788 637 ProSiteProfiles PAN/Apple domain profile. 142 226 IPR003609 -
Vvi10g788 637 Pfam S-locus glycoprotein domain 11 119 IPR000858 GO:0048544
Vvi10g788 637 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 7 636 - -
Vvi10g788 637 Pfam Domain of unknown function (DUF3403) 592 637 IPR021820 GO:0004674
Vvi10g788 637 SMART ntp_6 150 225 IPR003609 -
Vvi10g788 637 Gene3D Transferase(Phosphotransferase) domain 1 397 599 - -
Vvi10g788 637 SMART serkin_6 321 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g788 637 Pfam Protein tyrosine and serine/threonine kinase 322 590 IPR001245 GO:0004672|GO:0006468
Vvi10g788 637 CDD PAN_AP_plant 139 226 - -
Vvi10g788 637 SUPERFAMILY Protein kinase-like (PK-like) 305 612 IPR011009 -
Vvi10g788 637 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 636 - -
Vvi10g788 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Vvi10g788 637 ProSiteProfiles Protein kinase domain profile. 321 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g788 637 Pfam PAN-like domain 150 207 IPR003609 -
Vvi10g788 637 Gene3D Phosphorylase Kinase; domain 1 297 396 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76025 PF07714 PK_Tyr_Ser-Thr 2.50E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g788 - - vvi:100256692 1257.28