Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g840 ATGGCAATCCTCTCAGAACGAACAATTGTGCTACTCTTCTTTCTTTCTTCTCTTATCATCCATGGAAGCCCAAAGCCTACCCTCCTCTACAAATTTTGTACTGAAAATTCCAACTATGTCCCCAATAGCACTTACCAGAGTAGCCTCAACCTCCTCCTCACTTCCCTGTCGTCAGATGCTACAATACTTAACGGCCGCAAATTCCACAACACGACCGCAGGCCAAGCGCCAGACATGGTATATGGCCTCTACTTATGCCGGGGAGATGTCACAGATGCAGTATGCCAGGACTGCGTCCAGACTGCAAGTCAAGAGATCCTGACCAAGTGTCCCAACAGAAAAGAGGCACTAAGTTGGTACGACCAGTGCATGTTTCGGTACTCCAATCGATCAATCTTCTCAATCATGGAAGAAAGGCCAAGTTTGATTAGTTTTGACTCACTCGATATGGAGGACCCAGATAGGTTTGATCAGATTGTGAATGAAACCATGGTGGGTTTGATTGAAAAGGCTACCCATAATTCTTTTGAGAGGGACATGTTTGAGACTGGAGAAGCAAATTTTAATGCGTCCACCAAGATATATGGCTTGGTGCAGTGCACACCAGATTTATCCGGCAGTAATTGTAGTACGTGCCTCGAGAATATTCTTTCTCGTATTACCAATTGTTGCCTTGGGAAGCAAGGGGGCAGGATTCTAGTTCCCAGCTGCAACTTCAGGTACGAGTTGCATCCATTCTATGGGGACTTAGCAGCAGCTACACCACCTGCACCTTCACCTCTGTCACCTCTGTCACCTCCAGGTAAAAAGGGAAACTCTTCCCAACTTCTAATTGCTATCATTGTTCCAGTAGCGGGCACATTGATAATTTCTGGCTTCCTCTGCTATTGTTGGCTAAAGAGGAAAAGGAAAGCAAAGAAGAAATACAATTCTACAGAAGAGGAAAAAGTTGAGAATGATATCACCACTGTGCAGTCATTGCAATTTGATTTTGGCACACTTGAAGCTACTACAAATAACTTCTCTGATGATAACAAGATTGGTGAAGGTGGATTTGGTGATGTGTACAAGGGTACACTTTCTAGCGGAAAAGAAATTGCTATAAAGAGGCTATCTAGAAGCTCTGCACAAGGCGCAGTAGAATTCAAGAATGAGGTTGTATTGGTAGCCAAGCTTCAACACAGAAACCTAGTGAGGTTATTGGGATTTTGCTTGGAAGGGGAAGAGAAGATACTTGTCTATGAATATGTGCCCAACAAAAGCCTTGACCACTTTCTGTTTGACCCTGATAAACAAGGACAACTGGATTGGTCAAGACGGTATAAGATTATTGGACGAATAGCTCGAGGGATTCTTTACCTTCATGAAGATTCTCCGCTCAAAGTTATACACCGTGATCTAAAAGCCAGCAATGTTTTGTTAGATGGTGATATGAACCCAAAAATTTCAGATTTTGGCATGGCAAGGATTTTTGGAGTAGATCAAACTCGAGGAAGTACCAAAAGAGTTGTTGGCACATATGGCTACATGTCTCCAGAGTATGCAATGCATGGACACTTCTCTGCCAAGTCAGATGTATACAGTTTCGGTGTCCTAGTTTTGGAGATAATAAGTGGCAAGAAGAACAGTTGTTTCTACGAATCAGGCCAAACTGAGGACCTTCTAAGCTATGCATGGAAACTTTGGAGGAATGGTACACCCCTGGAATTGATGGACCCGATCATGGGGGACTCCTATGCAAGAAATGAAGTCATTAGATGCATCCATATGGGTTTATTATGTGTTCAAGAAGATCCTGAGGACAGACCATCCATGGCATCAGTAGTCCTCATGCTCAGCAGTTACTCTGTTACTCCACCATTGCCTCAACAACCAGCATTCTGCATTGGCATTTGTCGGACTGTCCGTCCGTCTATGGCGATTATGTCAGATTCTGGCACTGAGATCTTGGTTCCGGCCTGCGCCATCATTGGGATAATCTTTTTTGTGGTTCAGTGGATTCTGGTCTCTCGCGTCAAGCTTTCTCCAAAGCGGCACTCAACCACTCTAGAGGCAAGGAAGGGTGTTAGGAAGGCTTTTATCACTGCATTTAGATCTGGTGCAGTCATGGGTTTCCTTCTTGCTGCAAATGGTCTTTTGGTCCTCTATATTGCCAACAACCTCTTCAAGATATACTATGGTGATGATTGGGAAGGCCTTTTTGGGGCTATAACTAGTTATGGCCTTGATGGTTCTTCCATGGCTCTCTTTGGCAGAGTAGGTGGAGGAATCTATACAAAAGCTACTGATGTCGGTGCAAATCCTCATGGGCATCTTTGGTTTGGAAATATCAGGAAAACTAGAATGATGAGAAAAACAAAAAAGATTGGTCACCTTTGA 2379 43.84 MAILSERTIVLLFFLSSLIIHGSPKPTLLYKFCTENSNYVPNSTYQSSLNLLLTSLSSDATILNGRKFHNTTAGQAPDMVYGLYLCRGDVTDAVCQDCVQTASQEILTKCPNRKEALSWYDQCMFRYSNRSIFSIMEERPSLISFDSLDMEDPDRFDQIVNETMVGLIEKATHNSFERDMFETGEANFNASTKIYGLVQCTPDLSGSNCSTCLENILSRITNCCLGKQGGRILVPSCNFRYELHPFYGDLAAATPPAPSPLSPLSPPGKKGNSSQLLIAIIVPVAGTLIISGFLCYCWLKRKRKAKKKYNSTEEEKVENDITTVQSLQFDFGTLEATTNNFSDDNKIGEGGFGDVYKGTLSSGKEIAIKRLSRSSAQGAVEFKNEVVLVAKLQHRNLVRLLGFCLEGEEKILVYEYVPNKSLDHFLFDPDKQGQLDWSRRYKIIGRIARGILYLHEDSPLKVIHRDLKASNVLLDGDMNPKISDFGMARIFGVDQTRGSTKRVVGTYGYMSPEYAMHGHFSAKSDVYSFGVLVLEIISGKKNSCFYESGQTEDLLSYAWKLWRNGTPLELMDPIMGDSYARNEVIRCIHMGLLCVQEDPEDRPSMASVVLMLSSYSVTPPLPQQPAFCIGICRTVRPSMAIMSDSGTEILVPACAIIGIIFFVVQWILVSRVKLSPKRHSTTLEARKGVRKAFITAFRSGAVMGFLLAANGLLVLYIANNLFKIYYGDDWEGLFGAITSYGLDGSSMALFGRVGGGIYTKATDVGANPHGHLWFGNIRKTRMMRKTKKIGHL* 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18107109 18113810 + Vvi10g840 Vvi10g840 771439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g840 792 Pfam Inorganic H+ pyrophosphatase 644 767 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Vvi10g840 792 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Vvi10g840 792 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 635 - -
Vvi10g840 792 CDD STKc_IRAK 347 612 - -
Vvi10g840 792 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 7 635 - -
Vvi10g840 792 Gene3D - 25 131 IPR038408 -
Vvi10g840 792 Gene3D - 142 246 IPR038408 -
Vvi10g840 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vvi10g840 792 Gene3D Phosphorylase Kinase; domain 1 300 416 - -
Vvi10g840 792 Pfam Protein tyrosine and serine/threonine kinase 344 610 IPR001245 GO:0004672|GO:0006468
Vvi10g840 792 ProSiteProfiles Gnk2-homologous domain profile. 138 246 IPR002902 -
Vvi10g840 792 ProSiteProfiles Gnk2-homologous domain profile. 27 132 IPR002902 -
Vvi10g840 792 ProSiteProfiles Protein kinase domain profile. 341 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g840 792 Pfam Salt stress response/antifungal 33 129 IPR002902 -
Vvi10g840 792 Pfam Salt stress response/antifungal 152 242 IPR002902 -
Vvi10g840 792 Gene3D Transferase(Phosphotransferase) domain 1 417 619 - -
Vvi10g840 792 SUPERFAMILY Protein kinase-like (PK-like) 327 639 IPR011009 -
Vvi10g840 792 SMART serkin_6 341 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76026 PF07714 PK_Tyr_Ser-Thr 2.20E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g840 - - vvi:100266208 1212.21