Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g89 ATGAACTTCTACAAGGATACATGTCCTCAGGCTGAAGATGTTATCAGAGAGCAGGTCAGGCTTCTGTATAAGCGCCACAAGAACACTGCATTCTCATGGCTCAGAAACATCTTCCATGACTGTGCTGTTCAGTCATGTGATGCTTCTCTTCTGCTGGACTCAACAAGGAGGTCCTTGTCTGAGAAGGAGACAGACAGGAGCTTTGGGCTCAGGAACTTCAGATACCTTGACACCATCAAAGAGGCTGTGGAGAGGGAGTGCCCTGGAGTTGTTTCATGTGCTGATATCCTTGTGTTGTCTGCTAGGGATGGCATTGTCTCGCTAGGAGGCCCTCACATCTCTCTTAAAACTGGAAGAAGAGATGGTAGGAAGAGCAGAGCAGAGATCCTTGAGGAATACCTCCCAGATCACAATGAGAGCATGTCTGTTGTCCTTGATAGGTTTGCAGCCATTGGCATTGACACCCCTGGACTGGTTGCCCTTCTAGGAGCTCACAGTGTTGGTAGAACCCACTGCTGTGCAATATGTGAGGAATGA 537 48.6 MNFYKDTCPQAEDVIREQVRLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRRSLSEKETDRSFGLRNFRYLDTIKEAVERECPGVVSCADILVLSARDGIVSLGGPHISLKTGRRDGRKSRAEILEEYLPDHNESMSVVLDRFAAIGIDTPGLVALLGAHSVGRTHCCAICEE* 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1056610 1058625 + Vvi10g89 Vvi10g89 770688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g89 178 PANTHER PEROXIDASE 25-RELATED 1 175 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi10g89 178 PANTHER PEROXIDASE 42 1 175 - -
Vvi10g89 178 SUPERFAMILY Heme-dependent peroxidases 1 174 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi10g89 178 Gene3D Peroxidase, domain 2 135 174 - -
Vvi10g89 178 PRINTS Haem peroxidase superfamily signature 30 44 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi10g89 178 PRINTS Haem peroxidase superfamily signature 91 108 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi10g89 178 PRINTS Haem peroxidase superfamily signature 109 121 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi10g89 178 PRINTS Haem peroxidase superfamily signature 157 172 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi10g89 178 Pfam Peroxidase 16 173 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi10g89 178 Gene3D - 2 134 - -
Vvi10g89 178 PRINTS Plant peroxidase signature 8 27 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi10g89 178 PRINTS Plant peroxidase signature 32 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi10g89 178 PRINTS Plant peroxidase signature 71 84 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi10g89 178 PRINTS Plant peroxidase signature 90 100 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi10g89 178 PRINTS Plant peroxidase signature 109 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi10g89 178 PRINTS Plant peroxidase signature 156 168 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi10g89 178 ProSiteProfiles Plant heme peroxidase family profile. 1 178 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g89 K00430 - vvi:100241814 341.273