Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10randomg10 ATGGCTCATCCTCACTACCACCGTCTCTTGGCCGCCTATGCCAATTGCCAAAAGGTCGGAGCACCACCTGAAGTAGTTGCAAGATTAGAGGAAGCTTGTGCATCTGAGGCTGCCATGGTTCGCACTGGAACAAGCTGCATAGGCGAGGATCCGGCTCTCGATCAATTCATGGAGGCCTACTGTGAGATGCTGACCAAGTACGAGCAAGAGCTCTCCAAACCCTTCAAGGAAGCTATGCTTTTTCTCTCAAGGGTCGAGTGCCAGTTCAAAGCCCTCACAGTTTCTTCTTCTGATTCTGCTGGTGGCGAGGGCCTTGATAGAAATGGATCATCTGAAGAAGAAGTTGATGTAAATAACAACTTCATTGATCCTCAAGCAGAGGACAGGGAACTGAAAGGCCAGCTTCTGCGCAAGTACAGTGGATATCTAAGCAGTCTCAAGCAGGAGTTCATGAAGAAGAGAAAGAAAGGAAAGCTACCTAAAGAAGCCCGGCAGCAGTTGCTGGATTGGTGGAGCAGACACTACAAATGGCCATACCCATCGGAGTCGCAGAAGTTGGCTCTTGCAGAATCCACAGGCCTGGATCAGAAGCAAATAAACAACTGGTTCATTAACCAAAGGAAGCGGCACTGGAAGCCCTCAGAAGATATGCAGTTTGTGGTTATGGATGCCACACATCCAGGCCACTATTACATGGACAATGTCTTGGGCAATCCCTTTCCCATGGATCTCTCCCCAACTCTCCTCTGA 750 49.2 MAHPHYHRLLAAYANCQKVGAPPEVVARLEEACASEAAMVRTGTSCIGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMLFLSRVECQFKALTVSSSDSAGGEGLDRNGSSEEEVDVNNNFIDPQAEDRELKGQLLRKYSGYLSSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPGHYYMDNVLGNPFPMDLSPTLL* 250
       

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10randomg10 249 Pfam KNOX2 domain 46 93 IPR005541 GO:0003677|GO:0005634
Vvi10randomg10 249 CDD homeodomain 162 214 IPR001356 GO:0003677
Vvi10randomg10 249 SMART KNOX1_2 1 38 IPR005540 GO:0003677|GO:0005634
Vvi10randomg10 249 ProSiteProfiles 'Homeobox' domain profile. 150 213 IPR001356 GO:0003677
Vvi10randomg10 249 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 238 - -
Vvi10randomg10 249 MobiDBLite consensus disorder prediction 96 117 - -
Vvi10randomg10 249 Pfam KNOX1 domain 1 34 IPR005540 GO:0003677|GO:0005634
Vvi10randomg10 249 SMART HOX_1 152 217 IPR001356 GO:0003677
Vvi10randomg10 249 SMART KNOX2_2 43 94 IPR005541 GO:0003677|GO:0005634
Vvi10randomg10 249 Gene3D - 148 220 - -
Vvi10randomg10 249 ProSitePatterns 'Homeobox' domain signature. 188 211 IPR017970 GO:0000981|GO:0006355
Vvi10randomg10 249 Pfam Homeobox KN domain 170 209 IPR008422 GO:0003677|GO:0006355
Vvi10randomg10 249 SUPERFAMILY Homeodomain-like 152 228 IPR009057 -
Vvi10randomg10 249 PANTHER - 1 238 - -
Vvi10randomg10 249 SMART ELK_2 130 151 IPR005539 GO:0003677
Vvi10randomg10 249 ProSiteProfiles ELK domain profile. 130 150 IPR005539 GO:0003677
Vvi10randomg10 249 Pfam ELK domain 130 151 IPR005539 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10randomg10 - - - vvi:100267474 516.924
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi15g561 ECH 1 520 Homeobox Transcription Factor Family AT4G00730 65.2 1.6e-187 652.9
Vvi16g616 ECH 3 422 Homeobox Transcription Factor Family AT4G00730 54.5 6.8e-125 444.9
Vvi12g521 ECH 59 511 Homeobox Transcription Factor Family AT4G00730 50.3 4.0e-117 419.1
Vvi4g68 . 8 331 Homeobox Transcription Factor Family AT4G32980 53.7 1.5e-82 303.9
Vvi14g1377 . 1 258 Homeobox Transcription Factor Family AT3G01470 62.1 3.4e-66 248.8
Vvi9g352 . 98 749 Homeobox Transcription Factor Family AT1G79840 63.8 4.6e-237 817.8
Vvi1g879 ECH 1 256 Homeobox Transcription Factor Family AT1G69780 65.2 6.3e-74 274.6
Vvi10g529 . 5 846 Homeobox Transcription Factor Family AT2G34710 80.5 0.0e+00 1368.2
Vvi6g262 ECH 3 845 Homeobox Transcription Factor Family AT2G34710 69.2 0.0e+00 1157.9
Vvi9g302 ECH 10 836 Homeobox Transcription Factor Family AT2G34710 67.6 0.0e+00 1111.3
Vvi4g277 ECH 14 840 Homeobox Transcription Factor Family AT2G34710 66.6 0.0e+00 1090.9
Vvi13g514 ECH 26 841 Homeobox Transcription Factor Family AT2G34710 61.4 3.8e-289 991.1
Vvi9g302 ECH 1 787 Homeobox Transcription Factor Family AT1G52150 86.7 0.0e+00 1356.7
Vvi4g277 ECH 3 791 Homeobox Transcription Factor Family AT1G52150 81.2 0.0e+00 1282.7
Vvi10g529 . 1 797 Homeobox Transcription Factor Family AT1G52150 68.3 0.0e+00 1075.5
Vvi6g262 ECH 22 795 Homeobox Transcription Factor Family AT1G52150 68.1 1.6e-302 1035.4
Vvi13g514 ECH 25 792 Homeobox Transcription Factor Family AT1G52150 58.2 2.9e-251 865.1
Vvi15g340 . 8 293 Homeobox Transcription Factor Family AT4G16780 54.7 8.5e-68 254.2
Vvi13g1249 . 122 326 Homeobox Transcription Factor Family AT4G16780 59.2 1.2e-50 197.2
Vvi8g1280 . 84 207 Homeobox Transcription Factor Family AT4G16780 77.6 7.4e-48 188.0
Vvi18g591 . 114 239 Homeobox Transcription Factor Family AT4G16780 71.1 3.2e-43 172.6
Vvi15g340 . 49 234 Homeobox Transcription Factor Family AT2G44910 66.0 1.1e-60 230.7
Vvi13g1249 . 111 330 Homeobox Transcription Factor Family AT2G44910 56.6 8.6e-53 204.5
Vvi8g1280 . 92 209 Homeobox Transcription Factor Family AT2G44910 80.7 1.9e-47 186.8
Vvi18g591 . 125 241 Homeobox Transcription Factor Family AT2G44910 72.9 1.4e-42 170.6
Vvi1g421 . 66 193 Homeobox Transcription Factor Family AT2G44910 64.1 1.7e-37 153.7
Vvi7g895 . 1 281 Homeobox Transcription Factor Family AT2G22430 51.4 5.5e-44 175.3
Vvi4g277 ECH 14 840 Homeobox Transcription Factor Family AT4G32880 81.1 0.0e+00 1364.7
Vvi9g302 ECH 10 836 Homeobox Transcription Factor Family AT4G32880 81.2 0.0e+00 1360.5
Vvi10g529 . 13 846 Homeobox Transcription Factor Family AT4G32880 67.8 0.0e+00 1121.7
Vvi6g262 ECH 16 845 Homeobox Transcription Factor Family AT4G32880 66.4 3.7e-313 1070.8
Vvi13g514 ECH 26 841 Homeobox Transcription Factor Family AT4G32880 58.1 1.2e-268 922.9
Vvi10g529 . 14 846 Homeobox Transcription Factor Family AT1G30490 78.9 0.0e+00 1315.8
Vvi6g262 ECH 7 845 Homeobox Transcription Factor Family AT1G30490 67.7 0.0e+00 1112.4
Vvi9g302 ECH 11 836 Homeobox Transcription Factor Family AT1G30490 64.6 5.7e-306 1047.0
Vvi4g277 ECH 15 840 Homeobox Transcription Factor Family AT1G30490 64.3 1.3e-305 1045.8
Vvi13g514 ECH 26 841 Homeobox Transcription Factor Family AT1G30490 60.5 4.1e-280 961.1
Vvi10g26 ECH 1 727 Homeobox Transcription Factor Family AT4G21750 76.8 0.0e+00 1116.3
Vvi12g521 ECH 36 758 Homeobox Transcription Factor Family AT4G21750 72.7 8.9e-306 1046.2
Vvi15g561 ECH 82 771 Homeobox Transcription Factor Family AT4G21750 54.4 8.3e-211 730.7
Vvi17g989 . 37 645 Homeobox Transcription Factor Family AT4G21750 52.3 4.0e-173 605.5
Vvi4g900 ECH 266 542 Homeobox Transcription Factor Family AT5G41410 52.8 1.1e-67 255.0
Vvi8g238 . 203 403 Homeobox Transcription Factor Family AT5G41410 55.6 1.6e-60 231.1
Vvi6g820 . 209 404 Homeobox Transcription Factor Family AT5G41410 56.4 2.1e-60 230.7
Vvi18g877 ECH 25 199 Homeobox Transcription Factor Family AT5G41410 61.6 3.7e-60 229.9
Vvi3g4 ECH 239 438 Homeobox Transcription Factor Family AT5G41410 54.9 2.0e-58 224.2
Vvi6g240 . 503 699 Homeobox Transcription Factor Family AT5G41410 51.8 1.4e-48 191.4
Vvi4g900 ECH 67 515 Homeobox Transcription Factor Family AT4G36870 52.9 1.4e-114 410.6
Vvi18g877 ECH 22 172 Homeobox Transcription Factor Family AT4G36870 83.0 2.3e-69 260.4
Vvi2g25 . 71 295 Homeobox Transcription Factor Family AT4G36870 57.3 2.4e-66 250.4
Vvi8g809 ECH 169 390 Homeobox Transcription Factor Family AT4G36870 50.2 7.4e-52 202.2
Vvi3g4 ECH 130 408 Homeobox Transcription Factor Family AT1G75410 52.1 1.3e-69 260.8
Vvi8g238 . 145 375 Homeobox Transcription Factor Family AT1G75410 53.6 2.8e-56 216.5
Vvi6g820 . 140 376 Homeobox Transcription Factor Family AT1G75410 53.1 1.8e-55 213.8
Vvi2g25 . 74 294 Homeobox Transcription Factor Family AT1G75410 50.2 1.8e-47 187.2
Vvi18g877 ECH 22 171 Homeobox Transcription Factor Family AT1G75410 58.3 1.7e-42 170.6
Vvi3g4 ECH 129 434 Homeobox Transcription Factor Family AT1G19700 52.9 1.8e-79 293.9
Vvi8g238 . 146 404 Homeobox Transcription Factor Family AT1G19700 56.3 8.5e-69 258.5
Vvi6g820 . 141 403 Homeobox Transcription Factor Family AT1G19700 55.7 1.2e-67 254.6
Vvi18g877 ECH 22 210 Homeobox Transcription Factor Family AT1G19700 57.1 9.1e-55 211.8
Vvi15g340 . 13 234 Homeobox Transcription Factor Family AT4G17460 57.3 4.9e-60 228.4
Vvi13g1249 . 122 355 Homeobox Transcription Factor Family AT4G17460 53.2 4.1e-46 182.2
Vvi8g1280 . 66 207 Homeobox Transcription Factor Family AT4G17460 69.2 1.7e-44 176.8
Vvi18g591 . 100 257 Homeobox Transcription Factor Family AT4G17460 54.6 1.8e-38 156.8
Vvi15g340 . 55 278 Homeobox Transcription Factor Family AT5G47370 60.9 1.7e-60 229.9
Vvi8g1280 . 84 206 Homeobox Transcription Factor Family AT5G47370 80.2 8.2e-47 184.5
Vvi13g1249 . 122 320 Homeobox Transcription Factor Family AT5G47370 60.4 1.1e-46 184.1
Vvi18g591 . 117 240 Homeobox Transcription Factor Family AT5G47370 66.1 3.1e-38 156.0
Vvi18g591 . 1 259 Homeobox Transcription Factor Family AT4G37790 55.2 7.0e-67 251.1
Vvi8g1280 . 78 206 Homeobox Transcription Factor Family AT4G37790 79.5 1.3e-52 203.8
Vvi13g1249 . 187 314 Homeobox Transcription Factor Family AT4G37790 75.6 7.8e-50 194.5
Vvi15g340 . 115 233 Homeobox Transcription Factor Family AT4G37790 77.3 1.1e-46 184.1
Vvi15g340 . 49 237 Homeobox Transcription Factor Family AT3G60390 70.0 3.6e-67 252.3
Vvi13g1249 . 101 324 Homeobox Transcription Factor Family AT3G60390 58.6 7.0e-55 211.5
Vvi8g1280 . 57 210 Homeobox Transcription Factor Family AT3G60390 69.8 1.2e-49 194.1
Vvi18g591 . 118 239 Homeobox Transcription Factor Family AT3G60390 73.2 1.5e-44 177.2
Vvi1g421 . 59 194 Homeobox Transcription Factor Family AT3G60390 62.0 2.9e-37 152.9
Vvi18g591 . 1 259 Homeobox Transcription Factor Family AT2G22800 51.6 1.0e-57 220.7
Vvi13g1249 . 151 314 Homeobox Transcription Factor Family AT2G22800 61.6 1.3e-49 193.7
Vvi8g1280 . 85 206 Homeobox Transcription Factor Family AT2G22800 77.0 1.7e-49 193.4
Vvi15g340 . 115 233 Homeobox Transcription Factor Family AT2G22800 75.6 3.0e-46 182.6
Vvi15g561 ECH 1 771 Homeobox Transcription Factor Family AT3G61150 65.9 1.2e-289 992.6
Vvi16g616 ECH 10 649 Homeobox Transcription Factor Family AT3G61150 53.4 9.4e-205 710.7
Vvi12g521 ECH 27 758 Homeobox Transcription Factor Family AT3G61150 50.7 6.7e-203 704.5
Vvi10g26 ECH 29 727 Homeobox Transcription Factor Family AT3G61150 51.5 1.7e-201 699.9
Vvi18g590 . 17 342 Homeobox Transcription Factor Family AT4G08150 68.0 6.4e-122 434.5
Vvi12g425 . 1 232 Homeobox Transcription Factor Family AT4G08150 62.1 1.1e-76 284.3
Vvi10randomg10 . 1 246 Homeobox Transcription Factor Family AT4G08150 59.4 3.4e-75 279.3
Vvi17g773 ECH 79 314 Homeobox Transcription Factor Family AT4G08150 55.5 2.3e-71 266.5
Vvi1g659 ECH 74 308 Homeobox Transcription Factor Family AT4G08150 57.1 1.1e-70 264.2
Vvi1g659 ECH 1 317 Homeobox Transcription Factor Family AT1G70510 61.5 9.6e-105 377.1
Vvi17g773 ECH 1 316 Homeobox Transcription Factor Family AT1G70510 54.9 2.1e-88 322.8
Vvi14g102 . 37 287 Homeobox Transcription Factor Family AT1G70510 51.2 6.9e-71 264.6
Vvi12g425 . 2 232 Homeobox Transcription Factor Family AT1G70510 51.3 3.9e-66 248.8
Vvi10randomg10 . 2 223 Homeobox Transcription Factor Family AT1G70510 52.2 5.9e-62 235.0
Vvi11g601 ECH 112 401 Homeobox Transcription Factor Family AT5G25220 82.0 7.9e-131 464.2
Vvi4g540 ECH 1 206 Homeobox Transcription Factor Family AT5G25220 90.8 4.0e-106 382.1
Vvi2g420 . 10 292 Homeobox Transcription Factor Family AT5G25220 68.0 1.8e-103 373.2
Vvi11g601 ECH 138 406 Homeobox Transcription Factor Family AT5G11060 86.8 2.6e-131 465.7
Vvi4g540 ECH 1 217 Homeobox Transcription Factor Family AT5G11060 88.9 4.0e-108 388.7
Vvi2g420 . 23 290 Homeobox Transcription Factor Family AT5G11060 69.1 3.6e-101 365.5
Vvi11g601 ECH 80 387 Homeobox Transcription Factor Family AT4G32040 67.5 1.8e-113 406.4
Vvi2g420 . 14 276 Homeobox Transcription Factor Family AT4G32040 63.5 3.6e-90 328.9
Vvi4g540 ECH 4 192 Homeobox Transcription Factor Family AT4G32040 83.2 4.4e-88 322.0
Vvi1g659 ECH 1 319 Homeobox Transcription Factor Family AT1G23380 68.4 1.0e-120 430.3
Vvi17g773 ECH 1 320 Homeobox Transcription Factor Family AT1G23380 60.7 3.0e-101 365.5
Vvi14g102 . 12 292 Homeobox Transcription Factor Family AT1G23380 50.7 1.4e-74 276.9
Vvi18g590 . 72 316 Homeobox Transcription Factor Family AT1G23380 53.8 1.4e-69 260.4
Vvi12g425 . 3 232 Homeobox Transcription Factor Family AT1G23380 53.4 1.3e-67 253.8
Vvi10randomg10 . 3 223 Homeobox Transcription Factor Family AT1G23380 54.1 3.5e-65 245.7
Vvi2g420 . 1 290 Homeobox Transcription Factor Family AT1G62990 78.3 1.4e-126 449.5
Vvi11g601 ECH 139 401 Homeobox Transcription Factor Family AT1G62990 65.4 6.4e-95 344.4
Vvi4g540 ECH 4 206 Homeobox Transcription Factor Family AT1G62990 73.3 9.9e-80 293.9
Vvi1g879 ECH 1 256 Homeobox Transcription Factor Family AT1G26960 61.3 3.1e-61 232.3
Vvi1g879 ECH 1 253 Homeobox Transcription Factor Family AT3G01220 53.8 8.0e-50 194.5
Vvi14g1511 ECH 1 277 Homeobox Transcription Factor Family AT3G01220 50.7 8.9e-49 191.0
Vvi17g989 . 37 645 Homeobox Transcription Factor Family AT1G17920 68.3 9.0e-233 803.5
Vvi17g989 . 37 645 Homeobox Transcription Factor Family AT1G73360 69.6 2.2e-245 845.5
Vvi1g421 . 37 191 Homeobox Transcription Factor Family AT1G70920 65.2 1.6e-45 179.5
Vvi12g521 ECH 60 758 Homeobox Transcription Factor Family AT1G05230 80.9 0.0e+00 1093.2
Vvi10g26 ECH 26 727 Homeobox Transcription Factor Family AT1G05230 75.4 3.8e-298 1020.8
Vvi15g561 ECH 83 771 Homeobox Transcription Factor Family AT1G05230 55.6 4.6e-211 731.5
Vvi17g989 . 37 650 Homeobox Transcription Factor Family AT1G05230 51.1 2.4e-167 586.3
Vvi4g927 . 6 205 Homeobox Transcription Factor Family AT2G18550 53.0 2.5e-51 199.1
Vvi12g521 ECH 73 758 Homeobox Transcription Factor Family AT2G32370 54.5 2.1e-200 696.0
Vvi10g26 ECH 47 727 Homeobox Transcription Factor Family AT2G32370 51.7 1.3e-186 650.2
Vvi4g927 . 5 209 Homeobox Transcription Factor Family AT4G36740 56.9 2.1e-58 222.6
Vvi15g561 ECH 81 767 Homeobox Transcription Factor Family AT5G52170 54.8 3.7e-202 701.8
Vvi16g616 ECH 1 649 Homeobox Transcription Factor Family AT5G52170 51.2 1.9e-190 662.9
Vvi2g724 ECH 7 776 Homeobox Transcription Factor Family AT5G46880 58.9 3.4e-258 888.3
Vvi10g141 ECH 1 1423 Homeobox Transcription Factor Family AT1G28420 52.7 0.0e+00 1188.3
Vvi18g1005 . 171 395 Homeobox Transcription Factor Family AT1G75430 51.9 7.5e-56 214.5
Vvi8g238 . 144 401 Homeobox Transcription Factor Family AT2G16400 62.7 1.3e-81 300.8
Vvi6g820 . 92 413 Homeobox Transcription Factor Family AT2G16400 51.5 4.0e-78 289.3
Vvi18g877 ECH 17 194 Homeobox Transcription Factor Family AT2G16400 60.8 7.4e-56 215.3
Vvi6g240 . 485 718 Homeobox Transcription Factor Family AT2G16400 51.9 8.2e-55 211.8
Vvi8g238 . 125 408 Homeobox Transcription Factor Family AT2G27220 53.1 8.9e-69 258.1
Vvi8g238 . 125 443 Homeobox Transcription Factor Family AT2G35940 65.7 4.6e-104 375.9
Vvi18g877 ECH 22 242 Homeobox Transcription Factor Family AT2G35940 50.4 3.8e-58 223.4
Vvi8g238 . 151 413 Homeobox Transcription Factor Family AT4G34610 52.6 3.1e-63 240.0
Vvi6g820 . 149 409 Homeobox Transcription Factor Family AT4G34610 51.9 3.2e-60 229.9
Vvi18g877 ECH 31 205 Homeobox Transcription Factor Family AT4G34610 60.0 2.6e-54 210.3
Vvi18g1005 . 277 447 Homeobox Transcription Factor Family AT4G34610 61.9 3.9e-50 196.4
Vvi6g240 . 526 718 Homeobox Transcription Factor Family AT4G34610 56.5 5.1e-50 196.1
Vvi8g809 ECH 253 423 Homeobox Transcription Factor Family AT4G34610 56.4 1.8e-47 187.6
Vvi13g367 ECH 666 819 Homeobox Transcription Factor Family AT4G34610 52.6 4.5e-38 156.4
Vvi10g26 ECH 1 724 Homeobox Transcription Factor Family AT4G04890 79.9 0.0e+00 1130.9
Vvi12g521 ECH 36 755 Homeobox Transcription Factor Family AT4G04890 75.6 4.7e-312 1067.0
Vvi15g561 ECH 82 770 Homeobox Transcription Factor Family AT4G04890 55.7 3.7e-216 748.4
Vvi17g989 . 37 657 Homeobox Transcription Factor Family AT4G04890 52.7 2.6e-177 619.4
Vvi11g914 . 141 565 Homeobox Transcription Factor Family AT4G29940 60.4 2.5e-138 490.0
Vvi6g262 ECH 1 845 Homeobox Transcription Factor Family AT5G60690 83.1 0.0e+00 1398.3
Vvi10g529 . 1 846 Homeobox Transcription Factor Family AT5G60690 69.4 0.0e+00 1156.0
Vvi13g514 ECH 26 841 Homeobox Transcription Factor Family AT5G60690 68.7 0.0e+00 1110.9
Vvi9g302 ECH 12 836 Homeobox Transcription Factor Family AT5G60690 66.7 8.3e-314 1073.2
Vvi4g277 ECH 16 840 Homeobox Transcription Factor Family AT5G60690 65.2 1.1e-309 1059.3
Vvi10randomg10 . 1 250 Homeobox Transcription Factor Family AT1G62360 84.1 2.2e-119 426.0
Vvi12g425 . 1 249 Homeobox Transcription Factor Family AT1G62360 78.7 1.9e-110 396.4
Vvi18g590 . 74 320 Homeobox Transcription Factor Family AT1G62360 58.3 1.3e-74 277.3
Vvi17g773 ECH 66 312 Homeobox Transcription Factor Family AT1G62360 54.4 7.9e-69 258.1
Vvi1g659 ECH 77 318 Homeobox Transcription Factor Family AT1G62360 53.7 7.4e-67 251.5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13696 PF03791 KNOX2 2.90E-21 No_clan Vvi TF