Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10randomg10 ATGGCTCATCCTCACTACCACCGTCTCTTGGCCGCCTATGCCAATTGCCAAAAGGTCGGAGCACCACCTGAAGTAGTTGCAAGATTAGAGGAAGCTTGTGCATCTGAGGCTGCCATGGTTCGCACTGGAACAAGCTGCATAGGCGAGGATCCGGCTCTCGATCAATTCATGGAGGCCTACTGTGAGATGCTGACCAAGTACGAGCAAGAGCTCTCCAAACCCTTCAAGGAAGCTATGCTTTTTCTCTCAAGGGTCGAGTGCCAGTTCAAAGCCCTCACAGTTTCTTCTTCTGATTCTGCTGGTGGCGAGGGCCTTGATAGAAATGGATCATCTGAAGAAGAAGTTGATGTAAATAACAACTTCATTGATCCTCAAGCAGAGGACAGGGAACTGAAAGGCCAGCTTCTGCGCAAGTACAGTGGATATCTAAGCAGTCTCAAGCAGGAGTTCATGAAGAAGAGAAAGAAAGGAAAGCTACCTAAAGAAGCCCGGCAGCAGTTGCTGGATTGGTGGAGCAGACACTACAAATGGCCATACCCATCGGAGTCGCAGAAGTTGGCTCTTGCAGAATCCACAGGCCTGGATCAGAAGCAAATAAACAACTGGTTCATTAACCAAAGGAAGCGGCACTGGAAGCCCTCAGAAGATATGCAGTTTGTGGTTATGGATGCCACACATCCAGGCCACTATTACATGGACAATGTCTTGGGCAATCCCTTTCCCATGGATCTCTCCCCAACTCTCCTCTGA 750 49.2 MAHPHYHRLLAAYANCQKVGAPPEVVARLEEACASEAAMVRTGTSCIGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMLFLSRVECQFKALTVSSSDSAGGEGLDRNGSSEEEVDVNNNFIDPQAEDRELKGQLLRKYSGYLSSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPGHYYMDNVLGNPFPMDLSPTLL* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10randomg10 249 Pfam KNOX2 domain 46 93 IPR005541 GO:0003677|GO:0005634
Vvi10randomg10 249 CDD homeodomain 162 214 IPR001356 GO:0003677
Vvi10randomg10 249 SMART KNOX1_2 1 38 IPR005540 GO:0003677|GO:0005634
Vvi10randomg10 249 ProSiteProfiles 'Homeobox' domain profile. 150 213 IPR001356 GO:0003677
Vvi10randomg10 249 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 238 - -
Vvi10randomg10 249 MobiDBLite consensus disorder prediction 96 117 - -
Vvi10randomg10 249 Pfam KNOX1 domain 1 34 IPR005540 GO:0003677|GO:0005634
Vvi10randomg10 249 SMART HOX_1 152 217 IPR001356 GO:0003677
Vvi10randomg10 249 SMART KNOX2_2 43 94 IPR005541 GO:0003677|GO:0005634
Vvi10randomg10 249 Gene3D - 148 220 - -
Vvi10randomg10 249 ProSitePatterns 'Homeobox' domain signature. 188 211 IPR017970 GO:0000981|GO:0006355
Vvi10randomg10 249 Pfam Homeobox KN domain 170 209 IPR008422 GO:0003677|GO:0006355
Vvi10randomg10 249 SUPERFAMILY Homeodomain-like 152 228 IPR009057 -
Vvi10randomg10 249 PANTHER - 1 238 - -
Vvi10randomg10 249 SMART ELK_2 130 151 IPR005539 GO:0003677
Vvi10randomg10 249 ProSiteProfiles ELK domain profile. 130 150 IPR005539 GO:0003677
Vvi10randomg10 249 Pfam ELK domain 130 151 IPR005539 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13696 PF03791 KNOX2 2.90E-21 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10randomg10 - - vvi:100267474 516.924