Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10randomg5 ATGGCGGTGAACGGAGCTCTGTCTTTCTCTTGCTCTCACTCACACTCTCGCTTCTTCTTCGCTCTTCTAGTGTTGTTCTCCTTCTCTGCGATCCTTCCCCCGTTGTCTGTTTACGGCGCTACTGATCCTTCTGATGTTCAAGGTCTTCAGGTTATTTACAATTCACTGAATGGTCCTTCCCAGCTAACTGGTTGGACAAATAGTAGTGGTGATCCGTGTGGAGAGTCATGGAAAGGGGTTACTTGTGAGGGTTCAGCTGTTGTTTCCATTCAGATTTCCGGGTTAGGGCTGAATGGAACCATGGGATACTTGCTCTCAAACTTTTTGTCATTGAGGACATTAGATATGAGTGACAACAACATTCACGACACAATTCCATATCAGTTACCGCCAAATCTCACAAACTTAAACCTGGCGAGCAACAATTTAACTGGGAGTTTTCCGTATTCCATTTCTACCATGGTTTCTCTTAATTATTTGAATGTTAGCCACAATTCAATCTCCCAGTCAATTGGAGACATATTTGCTAAACTTGCTGGCCTCACAATCTTGGATCTCTCTGTGAACAACTTTACTGGAGATCTTCCTAATTCCTTTACTTCATTGTCCAATCTTTCTACCCTCTATTTGCAGAACAATCAATTAACTGGTCCTCTGAGTGTTCTTACTGGTTTGCCTTTGACTGATCTAAATGTTGCAAACAACAATTTCAGTGGATGGATACCATCAGAGCTTAGATCAATCCGAAAATTTATATATGATGGAAATTCATTCGACAATGGTCCTGCTCCTCCTCCTCCACCGTATACCCCACCTCCTCCCAGTAGATCTCGTAGTAATCGCACTCATTCTCCACCAGAAGCACGCACGCCCTCAAGTTCTGATGGCCAGTCATCGAACTCAGATAATGGAAATAAGGGCTTGGCCATTGGTCCTATTATAGGCATTGTTCTAGGTTCATTGCTGGTTCTTGTTGCATTGATTGCTCTTGTTTTTTGTGTTCGAAAAGCTAAAAAGAAGGGAACTGGTGCAAGACCATCTGTGGGAAGTGTTCCTGTTGTCACAGAAAAAGTAAATACAGAAACAATGCAAGAGCAGAGGACAAAGTTCACAGCCACTGTAACAGATCTGAAGCCTCCACCTGCAGAAAACTTGATGGTTGAGAGGGTACAAGGGAAAAATGGATCTGGAAAGAGAGTTAAATCCCCTATAACTGCTACCTCATACACCGTTGCTTCTCTTCAAACAGCAACAAACAGCTTTAGTCAAGAATTTCTTATTGGTGAAGGTTCCCTTGGCCGTGTTTATAGAGCTGATTTTCCAAATGGAAAGACAATGGCAATTAAGAAGATAGACAATGCAGCACTGTCTTTACAAGAAGAAGATAATTTTCTTGAGGCTGTTTCAAATATGTCCCGTCTGAGGCACCAAAACATTGTTACACTAGTGGGATATTGTGCAGAGCATGGGCAACGTCTTCTGGTTTATGAGTATATTGGAAATGGGAGTCTACATGATATGCTGCACTTCACTGATGATAGTGGCAAGACACTGACATGGAATGCACGTGTAAGAGTAGCCCTTGGCACTGCTCGAGCTCTAGAGTATTTGCATGAAGTTTGCCTGCCTTCTACTGTACATAGAAACTTCAAATCGGCAAATATTTTGCTTGATGAAGAGCTCAACCCCCATTTATCAGACTGTGGCCTAGCTGCCCTCACACCAAACACAGAGCGACAGGTTTCAACTCAGATGGTTGGTTCATTTGGTTACAGTGCTCCTGAATTTGCTTTATCTGGTATATACACTGTAAAAAGCGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTGTTGACAGGTCGGAAGCCCCTGGACAGTTCAAGAGTGAGATCAGAACAGTCACTTGTGAGATGGGCTACTCCCCAACTTCATGATATAGATGCCCTGGCAAAAATGGTTGATCCTTCCCTAAATGGCATGTATCCTGCAAAGTCTTTGTCACGTTTTGCTGACATCATTGCCTTGTGTGTTCAGCCGGAGCCAGAGTTTCGACCTCCAATGTCTGAAGTTGTGCAAGCACTGGTTCGGTTAGTACAAAGAGCAAGTGTGGTCAAGCGGCGCTCAAGTGATGAATCCGGTTTTGTGTACAAGACTCCAGAGCATGAGGCAATTGACATGTCATTTTAA 2190 43.47 MAVNGALSFSCSHSHSRFFFALLVLFSFSAILPPLSVYGATDPSDVQGLQVIYNSLNGPSQLTGWTNSSGDPCGESWKGVTCEGSAVVSIQISGLGLNGTMGYLLSNFLSLRTLDMSDNNIHDTIPYQLPPNLTNLNLASNNLTGSFPYSISTMVSLNYLNVSHNSISQSIGDIFAKLAGLTILDLSVNNFTGDLPNSFTSLSNLSTLYLQNNQLTGPLSVLTGLPLTDLNVANNNFSGWIPSELRSIRKFIYDGNSFDNGPAPPPPPYTPPPPSRSRSNRTHSPPEARTPSSSDGQSSNSDNGNKGLAIGPIIGIVLGSLLVLVALIALVFCVRKAKKKGTGARPSVGSVPVVTEKVNTETMQEQRTKFTATVTDLKPPPAENLMVERVQGKNGSGKRVKSPITATSYTVASLQTATNSFSQEFLIGEGSLGRVYRADFPNGKTMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHQNIVTLVGYCAEHGQRLLVYEYIGNGSLHDMLHFTDDSGKTLTWNARVRVALGTARALEYLHEVCLPSTVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPSLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRSSDESGFVYKTPEHEAIDMSF* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10randomg5 729 MobiDBLite consensus disorder prediction 280 303 - -
Vvi10randomg5 729 Pfam Protein tyrosine and serine/threonine kinase 426 695 IPR001245 GO:0004672|GO:0006468
Vvi10randomg5 729 Pfam Leucine rich repeat N-terminal domain 43 82 IPR013210 -
Vvi10randomg5 729 SUPERFAMILY Protein kinase-like (PK-like) 400 695 IPR011009 -
Vvi10randomg5 729 MobiDBLite consensus disorder prediction 256 303 - -
Vvi10randomg5 729 CDD STKc_IRAK 427 698 - -
Vvi10randomg5 729 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8 34 725 - -
Vvi10randomg5 729 SUPERFAMILY L domain-like 41 248 - -
Vvi10randomg5 729 ProSiteProfiles Leucine-rich repeat profile. 204 226 IPR001611 GO:0005515
Vvi10randomg5 729 Gene3D Ribonuclease Inhibitor 42 268 IPR032675 -
Vvi10randomg5 729 Pfam Leucine rich repeat 131 191 IPR001611 GO:0005515
Vvi10randomg5 729 PANTHER OS01G0253100 PROTEIN 34 725 IPR045271 GO:0004714|GO:0006468
Vvi10randomg5 729 MobiDBLite consensus disorder prediction 260 279 - -
Vvi10randomg5 729 Gene3D Phosphorylase Kinase; domain 1 384 498 - -
Vvi10randomg5 729 Gene3D Transferase(Phosphotransferase) domain 1 499 723 - -
Vvi10randomg5 729 ProSiteProfiles Protein kinase domain profile. 421 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76029 PF07714 PK_Tyr_Ser-Thr 1.10E-43 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10randomg5 - - vvi:100248686 1315.83