Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10randomg5 ATGGCGGTGAACGGAGCTCTGTCTTTCTCTTGCTCTCACTCACACTCTCGCTTCTTCTTCGCTCTTCTAGTGTTGTTCTCCTTCTCTGCGATCCTTCCCCCGTTGTCTGTTTACGGCGCTACTGATCCTTCTGATGTTCAAGGTCTTCAGGTTATTTACAATTCACTGAATGGTCCTTCCCAGCTAACTGGTTGGACAAATAGTAGTGGTGATCCGTGTGGAGAGTCATGGAAAGGGGTTACTTGTGAGGGTTCAGCTGTTGTTTCCATTCAGATTTCCGGGTTAGGGCTGAATGGAACCATGGGATACTTGCTCTCAAACTTTTTGTCATTGAGGACATTAGATATGAGTGACAACAACATTCACGACACAATTCCATATCAGTTACCGCCAAATCTCACAAACTTAAACCTGGCGAGCAACAATTTAACTGGGAGTTTTCCGTATTCCATTTCTACCATGGTTTCTCTTAATTATTTGAATGTTAGCCACAATTCAATCTCCCAGTCAATTGGAGACATATTTGCTAAACTTGCTGGCCTCACAATCTTGGATCTCTCTGTGAACAACTTTACTGGAGATCTTCCTAATTCCTTTACTTCATTGTCCAATCTTTCTACCCTCTATTTGCAGAACAATCAATTAACTGGTCCTCTGAGTGTTCTTACTGGTTTGCCTTTGACTGATCTAAATGTTGCAAACAACAATTTCAGTGGATGGATACCATCAGAGCTTAGATCAATCCGAAAATTTATATATGATGGAAATTCATTCGACAATGGTCCTGCTCCTCCTCCTCCACCGTATACCCCACCTCCTCCCAGTAGATCTCGTAGTAATCGCACTCATTCTCCACCAGAAGCACGCACGCCCTCAAGTTCTGATGGCCAGTCATCGAACTCAGATAATGGAAATAAGGGCTTGGCCATTGGTCCTATTATAGGCATTGTTCTAGGTTCATTGCTGGTTCTTGTTGCATTGATTGCTCTTGTTTTTTGTGTTCGAAAAGCTAAAAAGAAGGGAACTGGTGCAAGACCATCTGTGGGAAGTGTTCCTGTTGTCACAGAAAAAGTAAATACAGAAACAATGCAAGAGCAGAGGACAAAGTTCACAGCCACTGTAACAGATCTGAAGCCTCCACCTGCAGAAAACTTGATGGTTGAGAGGGTACAAGGGAAAAATGGATCTGGAAAGAGAGTTAAATCCCCTATAACTGCTACCTCATACACCGTTGCTTCTCTTCAAACAGCAACAAACAGCTTTAGTCAAGAATTTCTTATTGGTGAAGGTTCCCTTGGCCGTGTTTATAGAGCTGATTTTCCAAATGGAAAGACAATGGCAATTAAGAAGATAGACAATGCAGCACTGTCTTTACAAGAAGAAGATAATTTTCTTGAGGCTGTTTCAAATATGTCCCGTCTGAGGCACCAAAACATTGTTACACTAGTGGGATATTGTGCAGAGCATGGGCAACGTCTTCTGGTTTATGAGTATATTGGAAATGGGAGTCTACATGATATGCTGCACTTCACTGATGATAGTGGCAAGACACTGACATGGAATGCACGTGTAAGAGTAGCCCTTGGCACTGCTCGAGCTCTAGAGTATTTGCATGAAGTTTGCCTGCCTTCTACTGTACATAGAAACTTCAAATCGGCAAATATTTTGCTTGATGAAGAGCTCAACCCCCATTTATCAGACTGTGGCCTAGCTGCCCTCACACCAAACACAGAGCGACAGGTTTCAACTCAGATGGTTGGTTCATTTGGTTACAGTGCTCCTGAATTTGCTTTATCTGGTATATACACTGTAAAAAGCGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTGTTGACAGGTCGGAAGCCCCTGGACAGTTCAAGAGTGAGATCAGAACAGTCACTTGTGAGATGGGCTACTCCCCAACTTCATGATATAGATGCCCTGGCAAAAATGGTTGATCCTTCCCTAAATGGCATGTATCCTGCAAAGTCTTTGTCACGTTTTGCTGACATCATTGCCTTGTGTGTTCAGCCGGAGCCAGAGTTTCGACCTCCAATGTCTGAAGTTGTGCAAGCACTGGTTCGGTTAGTACAAAGAGCAAGTGTGGTCAAGCGGCGCTCAAGTGATGAATCCGGTTTTGTGTACAAGACTCCAGAGCATGAGGCAATTGACATGTCATTTTAA 2190 43.47 MAVNGALSFSCSHSHSRFFFALLVLFSFSAILPPLSVYGATDPSDVQGLQVIYNSLNGPSQLTGWTNSSGDPCGESWKGVTCEGSAVVSIQISGLGLNGTMGYLLSNFLSLRTLDMSDNNIHDTIPYQLPPNLTNLNLASNNLTGSFPYSISTMVSLNYLNVSHNSISQSIGDIFAKLAGLTILDLSVNNFTGDLPNSFTSLSNLSTLYLQNNQLTGPLSVLTGLPLTDLNVANNNFSGWIPSELRSIRKFIYDGNSFDNGPAPPPPPYTPPPPSRSRSNRTHSPPEARTPSSSDGQSSNSDNGNKGLAIGPIIGIVLGSLLVLVALIALVFCVRKAKKKGTGARPSVGSVPVVTEKVNTETMQEQRTKFTATVTDLKPPPAENLMVERVQGKNGSGKRVKSPITATSYTVASLQTATNSFSQEFLIGEGSLGRVYRADFPNGKTMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHQNIVTLVGYCAEHGQRLLVYEYIGNGSLHDMLHFTDDSGKTLTWNARVRVALGTARALEYLHEVCLPSTVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPSLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRSSDESGFVYKTPEHEAIDMSF* 730
       

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10randomg5 729 MobiDBLite consensus disorder prediction 280 303 - -
Vvi10randomg5 729 Pfam Protein tyrosine and serine/threonine kinase 426 695 IPR001245 GO:0004672|GO:0006468
Vvi10randomg5 729 Pfam Leucine rich repeat N-terminal domain 43 82 IPR013210 -
Vvi10randomg5 729 SUPERFAMILY Protein kinase-like (PK-like) 400 695 IPR011009 -
Vvi10randomg5 729 MobiDBLite consensus disorder prediction 256 303 - -
Vvi10randomg5 729 CDD STKc_IRAK 427 698 - -
Vvi10randomg5 729 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8 34 725 - -
Vvi10randomg5 729 SUPERFAMILY L domain-like 41 248 - -
Vvi10randomg5 729 ProSiteProfiles Leucine-rich repeat profile. 204 226 IPR001611 GO:0005515
Vvi10randomg5 729 Gene3D Ribonuclease Inhibitor 42 268 IPR032675 -
Vvi10randomg5 729 Pfam Leucine rich repeat 131 191 IPR001611 GO:0005515
Vvi10randomg5 729 PANTHER OS01G0253100 PROTEIN 34 725 IPR045271 GO:0004714|GO:0006468
Vvi10randomg5 729 MobiDBLite consensus disorder prediction 260 279 - -
Vvi10randomg5 729 Gene3D Phosphorylase Kinase; domain 1 384 498 - -
Vvi10randomg5 729 Gene3D Transferase(Phosphotransferase) domain 1 499 723 - -
Vvi10randomg5 729 ProSiteProfiles Protein kinase domain profile. 421 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10randomg5 - - - vvi:100248686 1315.83
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi12g488 . 25 773 Strubbelig Receptor Gene Family AT4G03390 62.1 8.2e-198 687.6
Vvi8g1247 . 2 738 Strubbelig Receptor Gene Family AT5G06820 54.2 1.9e-188 656.4
Vvi9g1107 . 29 691 Strubbelig Receptor Gene Family AT1G78980 59.4 1.3e-173 607.1
Vvi9g7 . 19 683 Strubbelig Receptor Gene Family AT1G78980 52.5 1.1e-132 471.1
Vvi12g488 . 20 655 Strubbelig Receptor Gene Family AT2G20850 50.6 1.8e-134 476.9
Vvi9g1107 . 1 682 Strubbelig Receptor Gene Family AT3G13065 54.9 2.6e-139 493.0
Vvi9g7 . 13 678 Strubbelig Receptor Gene Family AT3G13065 52.2 9.4e-113 404.8
Vvi9g7 . 387 678 Strubbelig Receptor Gene Family AT1G11130 52.7 1.8e-84 310.8
Vvi9g1107 . 395 682 Strubbelig Receptor Gene Family AT1G11130 50.3 6.1e-80 295.8
Vvi12g488 . 20 655 Strubbelig Receptor Gene Family AT2G20850 50.6 1.8e-134 476.9
Vvi8g1247 . 2 738 Strubbelig Receptor Gene Family AT5G06820 54.2 1.9e-188 656.4
Vvi12g488 . 25 773 Strubbelig Receptor Gene Family AT4G03390 62.1 8.2e-198 687.6
Vvi9g1107 . 1 682 Strubbelig Receptor Gene Family AT3G13065 54.9 2.6e-139 493.0
Vvi9g7 . 13 678 Strubbelig Receptor Gene Family AT3G13065 52.2 9.4e-113 404.8
Vvi9g1107 . 29 691 Strubbelig Receptor Gene Family AT1G78980 59.4 1.3e-173 607.1
Vvi9g7 . 19 683 Strubbelig Receptor Gene Family AT1G78980 52.5 1.1e-132 471.1
Vvi9g7 . 2 703 Strubbelig Receptor Gene Family AT1G53730 63.5 8.9e-199 690.6
Vvi10randomg5 . 17 707 Strubbelig Receptor Gene Family AT1G53730 53.7 2.5e-164 576.2
Vvi9g1107 . 4 686 Strubbelig Receptor Gene Family AT1G53730 51.8 4.1e-143 505.8
Vvi9g7 . 2 695 Strubbelig Receptor Gene Family AT3G14350 56.3 2.3e-172 602.8
Vvi10randomg4 . 45 142 Strubbelig Receptor Gene Family AT3G14350 78.6 2.2e-37 154.5
Vvi10randomg5 . 217 730 Strubbelig Receptor Gene Family AT4G22130 66.3 2.1e-179 625.9
Vvi9g7 . 384 697 Strubbelig Receptor Gene Family AT4G22130 69.3 1.6e-123 440.3
Vvi12g488 . 458 781 Strubbelig Receptor Gene Family AT4G22130 56.3 6.1e-102 368.6
Vvi9g1107 . 393 691 Strubbelig Receptor Gene Family AT4G22130 58.1 2.0e-100 363.6
Vvi8g1247 . 343 699 Strubbelig Receptor Gene Family AT4G22130 52.1 3.1e-98 356.3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76029 PF07714 PK_Tyr_Ser-Thr 1.10E-43 CL0016 Vvi PK