Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1023 ATGTCGGACGATTATGAAACCCCGAGTCCTGATGGAACCCAGTTTCCGGATGGCTTGAGGGTCCTGGCGGTTGATGACAATATAGTTTGTCTGAAAATCCTCGTAACTTTGCTTGAGCAATGTCGGTACAAAGTTACTGCTACAACGAAGGCTTGTGAAGCTCTGGAGATGTTGAGGGAGAACCGAGAAAATTTCGATATTGTGATCACCGACGTGAAGATGCCGGACATGGACGGATTCACGCTTCTGAAGATCATAGGACTCGAAATGGACATACCAGTAATCATGACGTCTGTGAACGACGACAGAAGCACGGTCTTGAAGGGGATAAGGCATGGCGCCCGGGACTATCTGCTGAAGCCTGTGAGGGTGTTGGAGATCAAGAACATATGGCAGCATGTTGTAAGGAAAAATTTGTTTGATTCCGGTAAGCCTGGCGTCAAGGAGGAAAAAGCTATGGAGATGGAGAAAAGCAAGGAGAAAGGAGGAGGAGAAGAAGAAGAAGAAGAAGAAGATCATCCCAAGGAACATTCTTTTGAAGATGGATCTGTCCGGAAGAAACAGCGGCTTAATTGGACGTCTGAGCTCCATATCAAATTTCTCAACGCCATTCACCAGCTGGAAACAGCAGATAGTAGGTGTTTGATTTAA 651 46.24 MSDDYETPSPDGTQFPDGLRVLAVDDNIVCLKILVTLLEQCRYKVTATTKACEALEMLRENRENFDIVITDVKMPDMDGFTLLKIIGLEMDIPVIMTSVNDDRSTVLKGIRHGARDYLLKPVRVLEIKNIWQHVVRKNLFDSGKPGVKEEKAMEMEKSKEKGGGEEEEEEEDHPKEHSFEDGSVRKKQRLNWTSELHIKFLNAIHQLETADSRCLI* 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18936289 18937226 - Vvi11g1023 Vvi11g1023 772464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1023 216 SMART REC_2 19 131 IPR001789 GO:0000160
Vvi11g1023 216 MobiDBLite consensus disorder prediction 145 164 - -
Vvi11g1023 216 SUPERFAMILY CheY-like 17 137 IPR011006 -
Vvi11g1023 216 MobiDBLite consensus disorder prediction 145 184 - -
Vvi11g1023 216 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR23 13 209 - -
Vvi11g1023 216 Pfam Response regulator receiver domain 21 129 IPR001789 GO:0000160
Vvi11g1023 216 CDD REC_typeB_ARR-like 21 135 - -
Vvi11g1023 216 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Vvi11g1023 216 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 209 IPR045279 GO:0009736
Vvi11g1023 216 Gene3D - 19 157 - -
Vvi11g1023 216 Gene3D - 183 213 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13701 PF00072 Response_reg 1.80E-23 CL0304 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1023 - K14491 vvi:100266808 376.711