Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g104 ATGCCGGTGAATCTGACGCCGAACGCGATTGCGGCAATCAACGGTGGAGATGTGAATTCAAAGCCGCTCGTGCAGGTTCTGGACATCAAGCTCATTGGAAACTCGCAGGAGCGGTACCGATTTCTGCTTTCCGATGCCGTGGCGACTCAGCAGGCCATGCTGGCGACTCAACTCAATGACCGAGTCAAGAGCGGACAAGTTCGCAAAGGATCTGTAATTCAGTTGATTGATTATATCTGCAGCGTTGTTCAAAATCGCAAGATTATTGTTGTGTTGAACATGGAAACTATAATACCAGAATGTGAAATAATTGGAAACCCGAAAATGAATACTGAATCTCATTCAACAGCTCAGAAAGAGTTTCCCGGTGGCAATCGTGCAAGATCAGTGGGTGTTACTAATAATAATTTGAGTGTCCAAAATGGTGGTAATAAGATGCCGAGTTTTCGACCTTCTGTTCAACCTCCTTTCCAACCGCCTCCAAATTACAAAAGTCATGGCACAATTTTGAAGAATGAGGCACCAGCACGGATAATTCCGATTGCTGCTTTGAATCCTTATCAGGGGCGGTGGGCTATCAAGGCAAGGGTAACTGCTAAAGGTGATCTGCGGAGATACAACAATGCCAGGGGAGATGGGAAGGTTTTCTCATTTGACCTCCTTGATTCTGATGGAGGGGAGATTCGAGTGACCTGCTTTAATGCAGTTGTTGATCGGTTTTATGATACTATTGAGGTTGGGAAAGTTTACTTGATATCGAAGGGTAGCTTAAAACCTGCACAGAAGAACTTCAACCACCTGAAGAATGAATGGGAAATATTTTTGGAAGCAAGCTCAAGTGTGGAGCTGTGCCCAGATGAAGATGGCTCAATTCCAAAACAGCAGTTCTCCTTTAGACCAATCAGTGAAATTGAGAATGTTGAAAACAATTCCATACTTGATGTTATTGGCATTGTAATATCAGTGAATCCTTCAGTCCCCATCTTGAGAAAGAATGGTATGGAAACTCAGCGAAGAATTGTAAATCTAAAGGATGGCTCTGGTCGGAGTATTGAGCTCACCATGTGGGGGGAATTCTGCAACAGGGAAGGTCATCAGCTGCAGGAGATGATTGATTCTGGATCTTTCCCAGTTTTGGCTGTGAAATCCGGAAAGGTTAACGACTTCAGTGGGAAATCTGTAGGCACAATCTCTGCCACACAGCTCTTCATAAATCCAGACTTTACAGAGGCTTGTAACTTGAGAGAGTGGTTTGATCGAGGGGGAAAGAATGCTGCTTCTCAGTCCATCTCTAGAGATATCATGCCTGCAGGATCTAGGAATGAGATACGTAAAACTGTGTCTCAGATCAAGGATGAAGGTCTTGGAAGATCAGATAAACCAGACTGGGTCACAGTGAAGGCAACCATATCATTCATTAAAACAGACACTTTCTGTTATGCGGCTTGCCCATTGATGATTGGAGATAGACAGTGTAATAAGAAAGTGACAAGGTCAGGGAACACAAGATGGCAATGTGACAGGTGCAATCAAGAATTCGAGGACTGTGATTATCGATATCTTCTTCAAGCTCAAGTACAAGACCATACAGGATTGACTTGGGTGACAGCTTTCCAGGAAGCCGGTGAAGAGATCTTGGGTTGCTCAGCAAAAGAGCTGTACTTGTTGAAATACGAGGAGGAGGATGATTTCCGGTTTGGAGAAATAATCCGGAGCAGACTCCTTAACCAATTTTTGTTCAGACTTAAGATCAAAGAGGAAATGTATGGTGAAGAACAGAGGGTGAAGATCACTGTTGTCAAAGCAGACAAGGTGAACTATACTTCTGAAAGTAGGCATCTGCTTGATCTGATCTCAAAGTGCCCTTAA 1869 43.77 MPVNLTPNAIAAINGGDVNSKPLVQVLDIKLIGNSQERYRFLLSDAVATQQAMLATQLNDRVKSGQVRKGSVIQLIDYICSVVQNRKIIVVLNMETIIPECEIIGNPKMNTESHSTAQKEFPGGNRARSVGVTNNNLSVQNGGNKMPSFRPSVQPPFQPPPNYKSHGTILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDTIEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLEASSSVELCPDEDGSIPKQQFSFRPISEIENVENNSILDVIGIVISVNPSVPILRKNGMETQRRIVNLKDGSGRSIELTMWGEFCNREGHQLQEMIDSGSFPVLAVKSGKVNDFSGKSVGTISATQLFINPDFTEACNLREWFDRGGKNAASQSISRDIMPAGSRNEIRKTVSQIKDEGLGRSDKPDWVTVKATISFIKTDTFCYAACPLMIGDRQCNKKVTRSGNTRWQCDRCNQEFEDCDYRYLLQAQVQDHTGLTWVTAFQEAGEEILGCSAKELYLLKYEEEDDFRFGEIIRSRLLNQFLFRLKIKEEMYGEEQRVKITVVKADKVNYTSESRHLLDLISKCP* 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1112461 1116155 + Vvi11g104 Vvi11g104 771545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g104 622 PANTHER REPLICATION FACTOR A 1, RFA1 2 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi11g104 622 CDD RPA1_DBD_A 180 283 - -
Vvi11g104 622 SUPERFAMILY Nucleic acid-binding proteins 295 424 IPR012340 -
Vvi11g104 622 Gene3D - 290 431 IPR012340 -
Vvi11g104 622 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Vvi11g104 622 Pfam Replication protein A OB domain 301 405 IPR031657 -
Vvi11g104 622 Gene3D - 177 287 IPR012340 -
Vvi11g104 622 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vvi11g104 622 SUPERFAMILY Nucleic acid-binding proteins 177 290 IPR012340 -
Vvi11g104 622 MobiDBLite consensus disorder prediction 111 130 - -
Vvi11g104 622 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 618 - -
Vvi11g104 622 CDD RPA1_DBD_B 312 419 - -
Vvi11g104 622 SUPERFAMILY Nucleic acid-binding proteins 444 620 IPR012340 -
Vvi11g104 622 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi11g104 622 CDD RPA1N 9 98 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vvi11g104 622 CDD RPA1_DBD_C 447 620 IPR013955 -
Vvi11g104 622 Pfam Replication factor-A C terminal domain 463 614 IPR013955 -
Vvi11g104 622 Pfam OB-fold nucleic acid binding domain 192 273 IPR004365 GO:0003676
Vvi11g104 622 Gene3D - 432 621 IPR012340 -
Vvi11g104 622 Gene3D - 4 111 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g104 K07466 RFA1, RPA1, rpa; replication factor A1 - vvi:100268119 1226.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g104 . Blo16g00969 . Bda11g01026 . . . . . . . . . . . . . . . . . . . . Cla11g00142 Cam11g0164 Cec11g0165 Cco11g0176 Clacu11g0299 Cmu11g0152 Cre11g0650 . . . . . Csa02g00027 Chy05g01462 . . . . . . Bpe13g01237 . Bma06g00893 Sed04g0901 . . . . . . . . Bhi06g01596 Tan08g0026 Cmetu06g1804 . Hepe08g2687 . . . . . . . . . Lsi11g00167 . . Cme05g02064
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi6g194 . 212 980 Core DNA Replication Machinery Family AT4G14700 63.1 1.3e-283 972.6
Vvi6g51 . 12 573 Core DNA Replication Machinery Family AT4G14700 66.3 4.3e-218 755.0
Vvi6g194 . 187 980 Core DNA Replication Machinery Family AT4G12620 63.4 2.9e-286 981.5
Vvi6g51 . 12 573 Core DNA Replication Machinery Family AT4G12620 67.7 3.0e-219 758.8
Vvi18g784 . 7 297 Core DNA Replication Machinery Family AT2G37560 65.6 1.8e-112 402.9
Vvi16g75 . 5 346 Core DNA Replication Machinery Family AT5G16690 56.8 2.5e-105 380.2
Vvi1g382 . 3 422 Core DNA Replication Machinery Family AT2G01120 65.8 5.5e-156 547.7
Vvi17g167 . 3 523 Core DNA Replication Machinery Family AT4G29910 61.0 1.7e-184 642.9
Vvi1g900 . 1 286 Core DNA Replication Machinery Family AT1G26840 66.4 9.9e-101 363.6
Vvi19g1109 . 1 814 Core DNA Replication Machinery Family AT1G79150 60.2 4.3e-253 871.3
Vvi1g1376 . 34 949 Core DNA Replication Machinery Family AT1G44900 78.9 0.0e+00 1410.6
Vvi10g382 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.6 5.5e-268 920.2
Vvi3g15 . 1 835 Core DNA Replication Machinery Family AT2G16440 73.0 0.0e+00 1167.9
Vvi11g613 . 1 733 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1123.6
Vvi7g390 . 1 716 Core DNA Replication Machinery Family AT4G02060 84.8 0.0e+00 1213.0
Vvi6g599 . 8 508 Core DNA Replication Machinery Family AT2G29680 61.3 2.4e-166 582.4
Vvi6g599 . 7 469 Core DNA Replication Machinery Family AT1G07270 58.5 1.3e-142 503.4
Vvi12g15 . 1 499 Core DNA Replication Machinery Family AT3G25100 69.0 2.1e-230 795.4
Vvi8g688 . 9 553 Core DNA Replication Machinery Family AT3G09660 80.2 1.5e-250 862.8
Vvi8g689 . 17 219 Core DNA Replication Machinery Family AT3G09660 57.1 8.2e-60 229.2
Vvi2g811 . 10 635 Core DNA Replication Machinery Family AT2G14050 75.7 4.8e-276 947.2
Vvi2g804 . 42 145 Core DNA Replication Machinery Family AT2G14050 82.7 5.3e-41 166.4
Vvi3g157 . 1 323 Core DNA Replication Machinery Family AT2G20980 63.7 2.0e-115 412.9
Vvi18g215 . 1 951 Core DNA Replication Machinery Family AT1G77320 51.8 4.8e-275 944.5
Vvi7g376 . 2 300 Core DNA Replication Machinery Family AT4G02110 58.9 5.3e-103 373.2
Vvi9g505 . 1 196 Core DNA Replication Machinery Family AT1G80190 62.0 1.7e-70 262.7
Vvi16g106 . 1 148 Core DNA Replication Machinery Family AT3G12530 74.3 1.5e-60 229.2
Vvi13g45 . 1 187 Core DNA Replication Machinery Family AT1G19080 69.5 2.2e-69 258.8
Vvi13g45 . 1 187 Core DNA Replication Machinery Family AT3G55490 69.5 2.2e-69 258.8
Vvi5g53 . 1 163 Core DNA Replication Machinery Family AT5G49010 65.2 1.8e-53 206.1
Vvi7g1057 . 10 1559 Core DNA Replication Machinery Family AT5G67100 57.3 0.0e+00 1669.8
Vvi1g1166 . 2 624 Core DNA Replication Machinery Family AT1G67630 63.4 3.9e-227 784.6
Vvi5g870 . 1 451 Core DNA Replication Machinery Family AT1G67320 70.6 2.3e-198 688.7
Vvi2g125 . 7 448 Core DNA Replication Machinery Family AT5G41880 67.7 7.9e-185 643.7
Vvi4g1328 . 37 1090 Core DNA Replication Machinery Family AT5G63960 84.3 0.0e+00 1808.1
Vvi8g1268 . 1 438 Core DNA Replication Machinery Family AT2G42120 79.5 2.7e-214 741.5
Vvi5g870 . 1 451 Core DNA Replication Machinery Family AT1G67320 70.6 2.3e-198 688.7
Vvi6g1182 . 1 2613 Core DNA Replication Machinery Family AT1G08260 55.7 0.0e+00 2666.3
Vvi6g1182 . 24 2720 Core DNA Replication Machinery Family AT2G27120 54.1 0.0e+00 2669.8
Vvi17g421 . 6 485 Core DNA Replication Machinery Family AT5G22110 70.1 8.6e-193 670.2
Vvi6g958 . 6 893 Core DNA Replication Machinery Family AT5G22010 66.7 0.0e+00 1079.7
Vvi2g377 . 1 329 Core DNA Replication Machinery Family AT1G63160 90.1 4.0e-170 594.3
Vvi8g128 . 1 355 Core DNA Replication Machinery Family AT5G27740 84.5 2.1e-177 618.6
Vvi18g231 . 1 337 Core DNA Replication Machinery Family AT1G21690 82.3 4.8e-155 544.3
Vvi18g244 . 1 361 Core DNA Replication Machinery Family AT1G77470 78.2 6.7e-158 553.9
Vvi11g104 . 26 618 Core DNA Replication Machinery Family AT2G06510 72.9 1.2e-263 906.0
Vvi17g667 . 1 603 Core DNA Replication Machinery Family AT5G08020 73.4 4.8e-262 900.6
Vvi11g705 . 1 182 Core DNA Replication Machinery Family AT5G08020 75.8 5.6e-77 285.8
Vvi11g853 . 1 182 Core DNA Replication Machinery Family AT5G08020 75.3 4.7e-76 282.7
Vvi3g759 . 11 168 Core DNA Replication Machinery Family AT5G08020 68.4 4.9e-57 219.5
Vvi17g667 . 1 603 Core DNA Replication Machinery Family AT5G61000 70.2 4.8e-257 884.0
Vvi11g705 . 1 182 Core DNA Replication Machinery Family AT5G61000 71.6 3.0e-73 273.5
Vvi11g853 . 1 182 Core DNA Replication Machinery Family AT5G61000 71.0 2.5e-72 270.4
Vvi3g759 . 11 168 Core DNA Replication Machinery Family AT5G61000 69.0 5.5e-59 226.1
Vvi11g998 . 1 272 Core DNA Replication Machinery Family AT2G24490 52.5 1.5e-72 270.0
Vvi4g214 . 5 263 Core DNA Replication Machinery Family AT2G24490 50.4 6.0e-66 248.1
Vvi11g998 . 7 227 Core DNA Replication Machinery Family AT3G02920 50.4 2.9e-58 222.2
Vvi8g979 ECH 1 108 Core DNA Replication Machinery Family AT4G18590 67.6 6.9e-39 156.8
Vvi14g15 . 1 376 Core DNA Replication Machinery Family AT5G26680 84.8 2.0e-187 652.1
Vvi15g233 . 1 647 Core DNA Replication Machinery Family AT1G08840 52.8 4.1e-176 615.9
Vvi15g231 . 30 418 Core DNA Replication Machinery Family AT1G08840 65.6 4.4e-138 489.6
Vvi13g761 . 1 298 Core DNA Replication Machinery Family AT2G25100 69.1 7.4e-117 417.2
Vvi6g1100 . 84 724 Core DNA Replication Machinery Family AT1G08130 73.5 4.3e-279 957.6
Vvi6g1100 . 122 724 Core DNA Replication Machinery Family AT1G49250 66.6 3.3e-232 801.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010255 1 3 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32