Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g105 ATGATATTTAGTCAGAAAATTTTTGCATCTCCAGTTCATAGCCTAACTGCTACTACTCCTAGAGACAATGTGAGAACAGCTCCAGCAACTCCACGAACGCCGTTGGTGCTCGATGGAGAGGACGAGGAAGAAGATGATGACGTTTATAAGACATCGAATTCGCCAGAAATTGAAAAGAACAGTAAGAGATTGAGGTTTGTACTTTGGGTTGAGTGGATTGCGTTTGTGTGTATTATGGGGTGCCTGATTGCTAGCTTAACTGTACATAGGTTGCTGCATACTTTGATTTGGGGTTTGGAAATTTGGAAATGGTCTGTGCTTGTATTGGTAATATTCTGTGGGAGATTGGTCACGGAATGGTGTATTAATATCGTAGTTTTCATGATTGAAAGGAATTTTTTGCTTAGAAAGAAGGTTTTGTATTTTGTTTATGGGTTGAAGAAGAGTGTGCTGGTCTTCATTTGGTTGGGTTTGATTCTTCTAGCTTGGGGTCTATTGATCAACCGTGGGGTGAAGCGATCAAGGAAGGCCACCAGGATTCTGAATTATGTGACGAGAGCTCTTGCTTCTTGTCTTATTGGGGCTGCTATATGGTTGGCAAAGACCCTGTTGGTAAAGATACTAGCTTCTTCTTTCCATGTAACAAGATTCTTTGACCGGATTCAAGAATCAATATTTCATCAATATGTTCTCCAGACCCTTTCGGGGCCTCCTTTGATGGCGATGGCAGAAATGGTTGGGAGTGTAAATAGTGCTCAGTTGAGTTTCAGGAGTACTAAGAGAGGAAAAGGAGGGGAGAAAGAAGAGGTTATTGATGTAGGGAAGCTTCATAAAATAAAGCAAGAGAAGGTTTCTGCTTGGACCATGAAAGGTTTGATTCAAGTGATAAGGGGTTCAGGGTTGACTACAATCTCAAATGCACTCGATGATAGTGTTGATGATGACGGAGGTGAACAGAAAGATAAGGAGATTACTAATGAGTGGGAAGCAAGGAATGCAGCTTCTCGGATTTTTATGAATGTAGCCAAGCCTTGTACCAAACATATTGATGAGGAGGACCTCTTGCGCTTCATGAAAAAGGAGGAGGTAGATAACGTGCTTCCATTATTTGAAGGAGCATCAGAAACTCGAAAGATTAAGAGATCCTCTTTGAAGAAGTGGGTGGTGAATGTCTATCTCGAACGCAAATCACTGGCACATTCTTTAAATGACACTAAAACAGCTATAGAGGAACTGAATAAAATTGCTTCAGGGGTTATGCTTATTGTTATTATTATTGTGTGGTTACTCTTGATGGGATTTGCGACAACCAATGTACTCGTCTTCATTTCATCACAGCTCTTACTTGTGGCATTTATGTTTGGCAACACCTGCAAGACTGTATTTGAAGCCATCATATTTGTATTTGTGATGCACCCATTTGATGTTGGTGATCGTTGTGTCATTGATGGAGTACAGATGGTTGTTGAAGAGATGAACATTTTGACGACAATCTTCCTGAGATATGACAATGAAAAGATATTCTATCCAAATTCAGTTTTGGCTACCAAACCTATCAGCAACTTTTACCGGAGCCCGGAAATGAGTGACTCTGTGGAGTTTGCTGTTGATTTTTCCACTTCAATGGAGACCATTGCTGCTCTTAAAGCTAGAATAAAAACGTACTTGGAGAGCAAGCCTCAACACTGGCGTCCTGGCCACAGTGTGTTGGTGAAGGATATTGTTGATGTGAACCAGATGAATATGGGTCTTTATGTCACCCACACCATAAACTTTCAGAACTATGGGGACAAGAGCAGCCGCAGATCTGAACTAGTCATAGAGCTGAAGAAAATCTTTGAAGAGCTTAATATTAAATATCATCTTCTGCCTCAGGAAGTTCATGTAAGAAGTGTTGACTCAGCACCACCAGTGTTTCCAACTACAATGCGATGA 1935 40.93 MIFSQKIFASPVHSLTATTPRDNVRTAPATPRTPLVLDGEDEEEDDDVYKTSNSPEIEKNSKRLRFVLWVEWIAFVCIMGCLIASLTVHRLLHTLIWGLEIWKWSVLVLVIFCGRLVTEWCINIVVFMIERNFLLRKKVLYFVYGLKKSVLVFIWLGLILLAWGLLINRGVKRSRKATRILNYVTRALASCLIGAAIWLAKTLLVKILASSFHVTRFFDRIQESIFHQYVLQTLSGPPLMAMAEMVGSVNSAQLSFRSTKRGKGGEKEEVIDVGKLHKIKQEKVSAWTMKGLIQVIRGSGLTTISNALDDSVDDDGGEQKDKEITNEWEARNAASRIFMNVAKPCTKHIDEEDLLRFMKKEEVDNVLPLFEGASETRKIKRSSLKKWVVNVYLERKSLAHSLNDTKTAIEELNKIASGVMLIVIIIVWLLLMGFATTNVLVFISSQLLLVAFMFGNTCKTVFEAIIFVFVMHPFDVGDRCVIDGVQMVVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSVEFAVDFSTSMETIAALKARIKTYLESKPQHWRPGHSVLVKDIVDVNQMNMGLYVTHTINFQNYGDKSSRRSELVIELKKIFEELNIKYHLLPQEVHVRSVDSAPPVFPTTMR* 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1116643 1125084 - Vvi11g105 Vvi11g105 771546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g105 644 PIRSF Memb_At2g17000 4 643 IPR016688 -
Vvi11g105 644 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 42 634 - -
Vvi11g105 644 MobiDBLite consensus disorder prediction 19 54 - -
Vvi11g105 644 SUPERFAMILY Sm-like ribonucleoproteins 463 522 IPR010920 -
Vvi11g105 644 Pfam Mechanosensitive ion channel 414 619 IPR006685 GO:0016020|GO:0055085
Vvi11g105 644 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 42 634 IPR016688 -
Vvi11g105 644 Gene3D - 473 522 IPR023408 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g105 K22048 - vvi:100262967 1228.39