Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1051 ATGGATAGCCCTTCTGCGACTCCTAGTTCAGCACATGGGTCGAACGATGAGAACCCTCGTGTGAAGTTTTTGTGTAGTTTTTCTGGTAGTATATTGCCCAGGCCACAGGATGGGAAGCTGAGGTATGTGGGTGGGGAGACGAGAATTGTAAGCGTGCCCCGGGATATTGGTTATGAGGAGCTGATGGGGAAGATGAAGGAGCTTTTTGATATGGCGGCAGTTTTGAAATACCAGCAACCTGATGAGGATCTTGATGCTCTTGTCTCGGTTGTGAACGATGATGACGTGACCAATATGATGGAGGAATATGACAAGTTGGGTTCTGGGGATGGGTTCACTAGGCTTAGGATTTTTCTGTTTTCGCATCCCGACCAAGATGGTGGTTCTTCGCATTTTGTTGATGTTGATGATACTGAGAGGAGGTATGTGGATGCTTTGAATAATTTAAACGATGCTTCGGATTTTAGGAAGCAGCAGATGCCTATGTCTCAGTTCAACTTGCATCACCTTACAATTCCTCATATGGGGTCGGGGCAACACCAACCTGTTGCTCAGAGGTATAATGAAATGGAGTCTCAGTGGAACCCTGCCTACTTTTCCCCTAGGCATCACGGACACCATGATGCAAGGCCGCTGGCAGAGTATCCATCTTCACCTTCATCTGCGAGGTTCCGCATGCCATTTGGGGAGTTACCAGATAAATGCATTGATAGACTGCCTGAAGAATACAGTCGGCAGCCAGTGAATCCCCAAGCTCCATATGATCATCAACCACAAGCTTCAGATAATGTTGTATGGCTGCCAACAGGAGCTATATCCAGTGAGAAGGCAGGTTTTCCGGGTAGCATGCTTCATGGCCCCAATGTTTTTGAAGGGAATAGTATCTGTGAGCATTGCCGGATGACTTTCCATAGACATTTAGAGCAACCCAACATGGGGAATGGATTGCCTCCAGTTGCTAATCCATGTGCAGAGTGCCCCCCAGGTAGGGAGTCTTTTTTGTTGAATACAGATGCAAAAATGCAGCATGGAATATATCCAAAAGAGCACAATGATCCTCGATCTCTGTATAATGAAACTCATAATCATGAACGGGGATGGATTCTACAGCATCAGTTGAATCCTCGGGCTGAGGATGCAAGAGCTCAAATCTCTGGAGCTGGAAGGTTGAATGATCCGTACATTGTAGATGGTTCTGGCGTGAATTTTCCAGTTGCACATGGTAATTTGCTGGATAACCATCATGTGTCTTCAAATTATGTCCATCATGAAGACCCACGGTACATTCGAACTGGACCTGAATTGGGGAATGGAGTATTCCATGACCAAGCTGCAGCTGCTGGCCCTGCTATCAATGTTCCTCCTCTGGAAGAGCCATCCACTTCTACCTGTCAAGCAAGTGGTTCAGTTAATCCAGGACCCATTAGGGGTACACGGGAGGGTAGTCCTAGGTTCTGTGTTGGGTTAGATAATCAAAATCCTTGGGGTGAATCATCACAGAAAATACTAGGTTTTGATGGCTCTGCTCTCCCTGATTATTCTTATGGCCATGCTACAAAATTGAACCCAAACACTCATGGTCAGGAAGGCCAACACCCATTTACTCCAGTTATAATGGAGGCTAAACAAGCTTTTAGAGAAGGAAAAGAAGAGATTCACATGGAGAAGGTTGAAGATAATGATATGCCAGTTACCTCCCTTCCAGAGAAAAACAATAATGCAGATAAGAAATGTGAGGTGGCATCTCTGGAGCCTGTCAATTTACCAGCTGAAGATAATGTTTTTAAACCTGTTGTCAACGATTGTGCTCCTCTTGAAGAAGATGCTAAACTGGATGTTAGCAATTTGTCTTTCTTACCAGAGTTGATTGCTTCTGTCAAAAGGGCTGCATTAGAAAGTGCTGAGGAGGTGAAAGCTAAAGTTCAAGAAAATGCTGATGCAGTGCATGCTTCATCAACTAAAGAGGCCTCAAACGAATTGGAGACAGCCAATGCCCTGGGGGATTTGGAGTTGGATTCTGACAATGATAATGTGAATACATTCAAGATTGAGCCAACAAAGGCTGAAGAAGAAGCTCTTTCAAGGGGATTACAGACAATAAAAAATGATGATCTGGAGGAGATTCGGGAATTAGGTTCTGGTACGTATGGAGCTGTTTACCATGGAAAATGGAAGGGGTCTGATGTAGCAATAAAGAGAATCAAAGCCAGCTGCTTTGCTGGGAGACCATCTGAAAGAGAACGTTTGATTGCGGATTTCTGGAAGGAGGCTTTGATATTGAGTTCATTACATCATCCAAATGTCGTTTCCTTTTATGGTATAGTTCGTGATGGCCCTGGTGGCTCTTTAGCAACTGTGACAGAATTCATGGTTAATGGTTCTTTGAAACAATTTTTGCAGAAAAAGGACAGGACAATAGATCGTCGGAAGAGACGCATCATAGCTATGGATGCTTCATTTGGAATGGAGTATTTACATGGCAAGAATATTGTACATTTTGACTTAAAATGTGAGAATTTATTAGTAAATATGAGAGATCCACATCGGCCTGTTTGCAAGATTGGTGACTTGGGTTTATCAAAGGTTAAACAGCATACGTTAGTATCAGGAGGTGTTCGTGGAACACTTCCTTGGATGGCACCAGAGCTTCTTAGTGGGAAAACCAACATGGTAACAGAAAAGATTGATGTATACTCATTTGGAATTGTGATGTGGGAATTGCTTACTGGGGACGAACCTTATGCAGATATGCATTGTGCTTCTATAATTGGAGGAATCGTGAACAACACATTGCGTCCACAAATTCCAAGATGGTGCGAACCCGAATGGAAATATTTGATGGAGAGTTGCTGGGCTTCCGATCCAGCAGAGAGGCCATCATTCTCAGAAATCTCTCAAAAGCTGAGGAATATGGCTGATGCCCCAATTACAAAATAA 2937 43.82 MDSPSATPSSAHGSNDENPRVKFLCSFSGSILPRPQDGKLRYVGGETRIVSVPRDIGYEELMGKMKELFDMAAVLKYQQPDEDLDALVSVVNDDDVTNMMEEYDKLGSGDGFTRLRIFLFSHPDQDGGSSHFVDVDDTERRYVDALNNLNDASDFRKQQMPMSQFNLHHLTIPHMGSGQHQPVAQRYNEMESQWNPAYFSPRHHGHHDARPLAEYPSSPSSARFRMPFGELPDKCIDRLPEEYSRQPVNPQAPYDHQPQASDNVVWLPTGAISSEKAGFPGSMLHGPNVFEGNSICEHCRMTFHRHLEQPNMGNGLPPVANPCAECPPGRESFLLNTDAKMQHGIYPKEHNDPRSLYNETHNHERGWILQHQLNPRAEDARAQISGAGRLNDPYIVDGSGVNFPVAHGNLLDNHHVSSNYVHHEDPRYIRTGPELGNGVFHDQAAAAGPAINVPPLEEPSTSTCQASGSVNPGPIRGTREGSPRFCVGLDNQNPWGESSQKILGFDGSALPDYSYGHATKLNPNTHGQEGQHPFTPVIMEAKQAFREGKEEIHMEKVEDNDMPVTSLPEKNNNADKKCEVASLEPVNLPAEDNVFKPVVNDCAPLEEDAKLDVSNLSFLPELIASVKRAALESAEEVKAKVQENADAVHASSTKEASNELETANALGDLELDSDNDNVNTFKIEPTKAEEEALSRGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPGGSLATVTEFMVNGSLKQFLQKKDRTIDRRKRRIIAMDASFGMEYLHGKNIVHFDLKCENLLVNMRDPHRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKTNMVTEKIDVYSFGIVMWELLTGDEPYADMHCASIIGGIVNNTLRPQIPRWCEPEWKYLMESCWASDPAERPSFSEISQKLRNMADAPITK* 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19186658 19204657 + Vvi11g1051 Vvi11g1051 772492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1051 978 PRINTS Tyrosine kinase catalytic domain signature 787 800 IPR001245 GO:0004672|GO:0006468
Vvi11g1051 978 PRINTS Tyrosine kinase catalytic domain signature 824 842 IPR001245 GO:0004672|GO:0006468
Vvi11g1051 978 PRINTS Tyrosine kinase catalytic domain signature 895 917 IPR001245 GO:0004672|GO:0006468
Vvi11g1051 978 PRINTS Tyrosine kinase catalytic domain signature 939 961 IPR001245 GO:0004672|GO:0006468
Vvi11g1051 978 Gene3D Phosphorylase Kinase; domain 1 691 791 - -
Vvi11g1051 978 CDD STKc_MAP3K-like 711 968 - -
Vvi11g1051 978 SMART serkin_6 705 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1051 978 Gene3D - 39 122 - -
Vvi11g1051 978 ProSitePatterns Protein kinases ATP-binding region signature. 711 732 IPR017441 GO:0005524
Vvi11g1051 978 Pfam Protein tyrosine and serine/threonine kinase 706 968 IPR001245 GO:0004672|GO:0006468
Vvi11g1051 978 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 143 425 - -
Vvi11g1051 978 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 7 90 - -
Vvi11g1051 978 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 537 978 - -
Vvi11g1051 978 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 454 536 - -
Vvi11g1051 978 SMART PB1_new 35 120 IPR000270 GO:0005515
Vvi11g1051 978 MobiDBLite consensus disorder prediction 456 472 - -
Vvi11g1051 978 SUPERFAMILY CAD & PB1 domains 37 127 - -
Vvi11g1051 978 SUPERFAMILY Protein kinase-like (PK-like) 694 966 IPR011009 -
Vvi11g1051 978 CDD PB1_UP2 24 120 - -
Vvi11g1051 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Vvi11g1051 978 MobiDBLite consensus disorder prediction 455 480 - -
Vvi11g1051 978 Pfam PB1 domain 36 120 IPR000270 GO:0005515
Vvi11g1051 978 ProSiteProfiles Protein kinase domain profile. 705 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1051 978 PANTHER - 537 978 - -
Vvi11g1051 978 PANTHER - 143 425 - -
Vvi11g1051 978 PANTHER - 7 90 - -
Vvi11g1051 978 PANTHER - 454 536 - -
Vvi11g1051 978 Gene3D Transferase(Phosphotransferase) domain 1 792 977 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76032 PF07714 PK_Tyr_Ser-Thr 1.10E-60 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1051 - - vvi:100266729 1938.31