Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g1051 | ATGGATAGCCCTTCTGCGACTCCTAGTTCAGCACATGGGTCGAACGATGAGAACCCTCGTGTGAAGTTTTTGTGTAGTTTTTCTGGTAGTATATTGCCCAGGCCACAGGATGGGAAGCTGAGGTATGTGGGTGGGGAGACGAGAATTGTAAGCGTGCCCCGGGATATTGGTTATGAGGAGCTGATGGGGAAGATGAAGGAGCTTTTTGATATGGCGGCAGTTTTGAAATACCAGCAACCTGATGAGGATCTTGATGCTCTTGTCTCGGTTGTGAACGATGATGACGTGACCAATATGATGGAGGAATATGACAAGTTGGGTTCTGGGGATGGGTTCACTAGGCTTAGGATTTTTCTGTTTTCGCATCCCGACCAAGATGGTGGTTCTTCGCATTTTGTTGATGTTGATGATACTGAGAGGAGGTATGTGGATGCTTTGAATAATTTAAACGATGCTTCGGATTTTAGGAAGCAGCAGATGCCTATGTCTCAGTTCAACTTGCATCACCTTACAATTCCTCATATGGGGTCGGGGCAACACCAACCTGTTGCTCAGAGGTATAATGAAATGGAGTCTCAGTGGAACCCTGCCTACTTTTCCCCTAGGCATCACGGACACCATGATGCAAGGCCGCTGGCAGAGTATCCATCTTCACCTTCATCTGCGAGGTTCCGCATGCCATTTGGGGAGTTACCAGATAAATGCATTGATAGACTGCCTGAAGAATACAGTCGGCAGCCAGTGAATCCCCAAGCTCCATATGATCATCAACCACAAGCTTCAGATAATGTTGTATGGCTGCCAACAGGAGCTATATCCAGTGAGAAGGCAGGTTTTCCGGGTAGCATGCTTCATGGCCCCAATGTTTTTGAAGGGAATAGTATCTGTGAGCATTGCCGGATGACTTTCCATAGACATTTAGAGCAACCCAACATGGGGAATGGATTGCCTCCAGTTGCTAATCCATGTGCAGAGTGCCCCCCAGGTAGGGAGTCTTTTTTGTTGAATACAGATGCAAAAATGCAGCATGGAATATATCCAAAAGAGCACAATGATCCTCGATCTCTGTATAATGAAACTCATAATCATGAACGGGGATGGATTCTACAGCATCAGTTGAATCCTCGGGCTGAGGATGCAAGAGCTCAAATCTCTGGAGCTGGAAGGTTGAATGATCCGTACATTGTAGATGGTTCTGGCGTGAATTTTCCAGTTGCACATGGTAATTTGCTGGATAACCATCATGTGTCTTCAAATTATGTCCATCATGAAGACCCACGGTACATTCGAACTGGACCTGAATTGGGGAATGGAGTATTCCATGACCAAGCTGCAGCTGCTGGCCCTGCTATCAATGTTCCTCCTCTGGAAGAGCCATCCACTTCTACCTGTCAAGCAAGTGGTTCAGTTAATCCAGGACCCATTAGGGGTACACGGGAGGGTAGTCCTAGGTTCTGTGTTGGGTTAGATAATCAAAATCCTTGGGGTGAATCATCACAGAAAATACTAGGTTTTGATGGCTCTGCTCTCCCTGATTATTCTTATGGCCATGCTACAAAATTGAACCCAAACACTCATGGTCAGGAAGGCCAACACCCATTTACTCCAGTTATAATGGAGGCTAAACAAGCTTTTAGAGAAGGAAAAGAAGAGATTCACATGGAGAAGGTTGAAGATAATGATATGCCAGTTACCTCCCTTCCAGAGAAAAACAATAATGCAGATAAGAAATGTGAGGTGGCATCTCTGGAGCCTGTCAATTTACCAGCTGAAGATAATGTTTTTAAACCTGTTGTCAACGATTGTGCTCCTCTTGAAGAAGATGCTAAACTGGATGTTAGCAATTTGTCTTTCTTACCAGAGTTGATTGCTTCTGTCAAAAGGGCTGCATTAGAAAGTGCTGAGGAGGTGAAAGCTAAAGTTCAAGAAAATGCTGATGCAGTGCATGCTTCATCAACTAAAGAGGCCTCAAACGAATTGGAGACAGCCAATGCCCTGGGGGATTTGGAGTTGGATTCTGACAATGATAATGTGAATACATTCAAGATTGAGCCAACAAAGGCTGAAGAAGAAGCTCTTTCAAGGGGATTACAGACAATAAAAAATGATGATCTGGAGGAGATTCGGGAATTAGGTTCTGGTACGTATGGAGCTGTTTACCATGGAAAATGGAAGGGGTCTGATGTAGCAATAAAGAGAATCAAAGCCAGCTGCTTTGCTGGGAGACCATCTGAAAGAGAACGTTTGATTGCGGATTTCTGGAAGGAGGCTTTGATATTGAGTTCATTACATCATCCAAATGTCGTTTCCTTTTATGGTATAGTTCGTGATGGCCCTGGTGGCTCTTTAGCAACTGTGACAGAATTCATGGTTAATGGTTCTTTGAAACAATTTTTGCAGAAAAAGGACAGGACAATAGATCGTCGGAAGAGACGCATCATAGCTATGGATGCTTCATTTGGAATGGAGTATTTACATGGCAAGAATATTGTACATTTTGACTTAAAATGTGAGAATTTATTAGTAAATATGAGAGATCCACATCGGCCTGTTTGCAAGATTGGTGACTTGGGTTTATCAAAGGTTAAACAGCATACGTTAGTATCAGGAGGTGTTCGTGGAACACTTCCTTGGATGGCACCAGAGCTTCTTAGTGGGAAAACCAACATGGTAACAGAAAAGATTGATGTATACTCATTTGGAATTGTGATGTGGGAATTGCTTACTGGGGACGAACCTTATGCAGATATGCATTGTGCTTCTATAATTGGAGGAATCGTGAACAACACATTGCGTCCACAAATTCCAAGATGGTGCGAACCCGAATGGAAATATTTGATGGAGAGTTGCTGGGCTTCCGATCCAGCAGAGAGGCCATCATTCTCAGAAATCTCTCAAAAGCTGAGGAATATGGCTGATGCCCCAATTACAAAATAA | 2937 | 43.82 | MDSPSATPSSAHGSNDENPRVKFLCSFSGSILPRPQDGKLRYVGGETRIVSVPRDIGYEELMGKMKELFDMAAVLKYQQPDEDLDALVSVVNDDDVTNMMEEYDKLGSGDGFTRLRIFLFSHPDQDGGSSHFVDVDDTERRYVDALNNLNDASDFRKQQMPMSQFNLHHLTIPHMGSGQHQPVAQRYNEMESQWNPAYFSPRHHGHHDARPLAEYPSSPSSARFRMPFGELPDKCIDRLPEEYSRQPVNPQAPYDHQPQASDNVVWLPTGAISSEKAGFPGSMLHGPNVFEGNSICEHCRMTFHRHLEQPNMGNGLPPVANPCAECPPGRESFLLNTDAKMQHGIYPKEHNDPRSLYNETHNHERGWILQHQLNPRAEDARAQISGAGRLNDPYIVDGSGVNFPVAHGNLLDNHHVSSNYVHHEDPRYIRTGPELGNGVFHDQAAAAGPAINVPPLEEPSTSTCQASGSVNPGPIRGTREGSPRFCVGLDNQNPWGESSQKILGFDGSALPDYSYGHATKLNPNTHGQEGQHPFTPVIMEAKQAFREGKEEIHMEKVEDNDMPVTSLPEKNNNADKKCEVASLEPVNLPAEDNVFKPVVNDCAPLEEDAKLDVSNLSFLPELIASVKRAALESAEEVKAKVQENADAVHASSTKEASNELETANALGDLELDSDNDNVNTFKIEPTKAEEEALSRGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPGGSLATVTEFMVNGSLKQFLQKKDRTIDRRKRRIIAMDASFGMEYLHGKNIVHFDLKCENLLVNMRDPHRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKTNMVTEKIDVYSFGIVMWELLTGDEPYADMHCASIIGGIVNNTLRPQIPRWCEPEWKYLMESCWASDPAERPSFSEISQKLRNMADAPITK* | 979 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 19186658 | 19204657 | + | Vvi11g1051 | Vvi11g1051 | 772492 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g1051 | 978 | PRINTS | Tyrosine kinase catalytic domain signature | 787 | 800 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi11g1051 | 978 | PRINTS | Tyrosine kinase catalytic domain signature | 824 | 842 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi11g1051 | 978 | PRINTS | Tyrosine kinase catalytic domain signature | 895 | 917 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi11g1051 | 978 | PRINTS | Tyrosine kinase catalytic domain signature | 939 | 961 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi11g1051 | 978 | Gene3D | Phosphorylase Kinase; domain 1 | 691 | 791 | - | - | |
Vvi11g1051 | 978 | CDD | STKc_MAP3K-like | 711 | 968 | - | - | |
Vvi11g1051 | 978 | SMART | serkin_6 | 705 | 976 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi11g1051 | 978 | Gene3D | - | 39 | 122 | - | - | |
Vvi11g1051 | 978 | ProSitePatterns | Protein kinases ATP-binding region signature. | 711 | 732 | IPR017441 | GO:0005524 | |
Vvi11g1051 | 978 | Pfam | Protein tyrosine and serine/threonine kinase | 706 | 968 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi11g1051 | 978 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 143 | 425 | - | - | |
Vvi11g1051 | 978 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 7 | 90 | - | - | |
Vvi11g1051 | 978 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 537 | 978 | - | - | |
Vvi11g1051 | 978 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 454 | 536 | - | - | |
Vvi11g1051 | 978 | SMART | PB1_new | 35 | 120 | IPR000270 | GO:0005515 | |
Vvi11g1051 | 978 | MobiDBLite | consensus disorder prediction | 456 | 472 | - | - | |
Vvi11g1051 | 978 | SUPERFAMILY | CAD & PB1 domains | 37 | 127 | - | - | |
Vvi11g1051 | 978 | SUPERFAMILY | Protein kinase-like (PK-like) | 694 | 966 | IPR011009 | - | |
Vvi11g1051 | 978 | CDD | PB1_UP2 | 24 | 120 | - | - | |
Vvi11g1051 | 978 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 830 | 842 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi11g1051 | 978 | MobiDBLite | consensus disorder prediction | 455 | 480 | - | - | |
Vvi11g1051 | 978 | Pfam | PB1 domain | 36 | 120 | IPR000270 | GO:0005515 | |
Vvi11g1051 | 978 | ProSiteProfiles | Protein kinase domain profile. | 705 | 977 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi11g1051 | 978 | PANTHER | - | 537 | 978 | - | - | |
Vvi11g1051 | 978 | PANTHER | - | 143 | 425 | - | - | |
Vvi11g1051 | 978 | PANTHER | - | 7 | 90 | - | - | |
Vvi11g1051 | 978 | PANTHER | - | 454 | 536 | - | - | |
Vvi11g1051 | 978 | Gene3D | Transferase(Phosphotransferase) domain 1 | 792 | 977 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76032 | PF07714 | PK_Tyr_Ser-Thr | 1.10E-60 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g1051 | - | - | vvi:100266729 | 1938.31 |