Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1070 ATGGGAGTGGCTAATAACATAGGGAAGTACCAGCTGAGTAGGACGATCGGAGAAGGTACTTTTGCCAAGGTTAAGTTGGCAGTGAACACCGAGAATGGCCAGTATGTTGCCATCAAGATCATCGACAAGCACATGGTCATGGAGAACAATCTCATCTTTCAGGTACAGAGAGAGATAAGAACGATGAAGCTTCTGCATCATCCCAACATTGTTAGGATACATGAGGTCATTGGCACCAAGACAAAGATTTACATAGTAATGGAATATGTATCAGGAGGGCAGCTCTCAGACAAGATGTCTTACGTCAAGAAGCTAGATGAACAGGATGCTAGAAAACATTTCCAGCAGTTGATTGATGCAGTGGACTACTGCCATGGCAGAGGGGTTTCTCATAGAGATCTAAAGCCAGAGAACTTGCTTTTGGACAGCAAAGGAAATGTAAAAGTCTCGGATTTTGGACTCAGTGCATTGCGCAAGCCTGGAGATGTGTTATCCACAGCATGCGGTTCACCATGCTATGTAGCACCAGAGCTGCTTGCAAATAGGGGCTACGATGGAGCAGCTGCAGATATTTGGTCTTGTGGAGTAATCCTTTTTGAGTTACTTGCTGGTTATCTTCCATTTGATGATCGCAATTTGATGAGCTTGTATAAGAAGATAACAAAAGCAGAGTACACTTGTCCAGAGTGGTTCACACCAAGCCAAACAAAGCTAATCTCCAGGATCCTTGAGCCCAACCCTAGACGGCGAATATCAATAGCAGAGATTGTTGAAGATGAGTGGTTTCAGATTGACTACGAACCTGCTTCTGGAATTGAATTTGATGACAAAATCAACCTAGATGATGTTCATGCTGCTTTCAATTTGATTGAGGAAAATAACGCCGAAGCAAAGGTACCCCACTCAAGTTTCATTAATGCTTTCCAACTAATAGCAATGTCACATGACCTCGATTTGTCAGGTCTTTTTGAAGAGAAGGATGACAACAAGCAGAAAGCAAGGTTTGGATCCAAGCACACAATTGATGAAACTATAAAGAAAATTGAGGCCGCTGCAAAGGATGTGAGCCTCTCAGTTGAAAGGAAGAACTCTAAGATGAAGATGCATCCACAACAGAAGATGACTAGATGTTCTCGATCATATTTCAACCTATCAGCAGAGGTGATTGAGGTGGCTCCCACTCATTGTGTTGTAGAAATATCAAAATCTGCAGGCGAGCTTGGTGTGTACAAAGAGTTCTGCACAAGCCTATCATGTCTGCTAAAAGAGAAATCGGGCATTCCATTAGAAGAAAAAGATTCCAATGAAGATGTCGTTAACATCAAAGATATTCAGGAAACTGAATGCTCTGAAAAGAAAGATGACAAGGACGACAAAGACATCAATGGCTATTCTTCCTCTTGA 1404 42.24 MGVANNIGKYQLSRTIGEGTFAKVKLAVNTENGQYVAIKIIDKHMVMENNLIFQVQREIRTMKLLHHPNIVRIHEVIGTKTKIYIVMEYVSGGQLSDKMSYVKKLDEQDARKHFQQLIDAVDYCHGRGVSHRDLKPENLLLDSKGNVKVSDFGLSALRKPGDVLSTACGSPCYVAPELLANRGYDGAAADIWSCGVILFELLAGYLPFDDRNLMSLYKKITKAEYTCPEWFTPSQTKLISRILEPNPRRRISIAEIVEDEWFQIDYEPASGIEFDDKINLDDVHAAFNLIEENNAEAKVPHSSFINAFQLIAMSHDLDLSGLFEEKDDNKQKARFGSKHTIDETIKKIEAAAKDVSLSVERKNSKMKMHPQQKMTRCSRSYFNLSAEVIEVAPTHCVVEISKSAGELGVYKEFCTSLSCLLKEKSGIPLEEKDSNEDVVNIKDIQETECSEKKDDKDDKDINGYSSS* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19455411 19458442 - Vvi11g1070 Vvi11g1070 772511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1070 467 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 21-RELATED 6 424 - -
Vvi11g1070 467 MobiDBLite consensus disorder prediction 448 467 - -
Vvi11g1070 467 Gene3D Kinase associated domain 1, KA1 301 424 - -
Vvi11g1070 467 Gene3D Transferase(Phosphotransferase) domain 1 90 281 - -
Vvi11g1070 467 SUPERFAMILY Protein kinase-like (PK-like) 7 263 IPR011009 -
Vvi11g1070 467 Pfam Protein kinase domain 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1070 467 SMART serkin_6 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1070 467 ProSiteProfiles Protein kinase domain profile. 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1070 467 CDD CIPK_C 306 422 - -
Vvi11g1070 467 Pfam NAF domain 303 360 IPR004041 GO:0007165
Vvi11g1070 467 ProSiteProfiles NAF domain profile. 300 324 IPR018451 GO:0007165
Vvi11g1070 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vvi11g1070 467 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Vvi11g1070 467 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Vvi11g1070 467 PANTHER SERINE/THREONINE KINASE 6 424 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76033 PF00069 Pkinase 5.40E-72 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1070 - - vvi:100259887 917.146