Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g11 ATGATCAAGAACCTCACCGACACTGACATGGCCGCCGCAGCCTCTGCTGCTGGGCGGCAGCTTCGGGAGGAGGAGGAGGAAGCGACTGCAACAGCAATAGAGTGGCCCGAGTGGTTGTCCGCCGGAGATCGGAGACTGTTGCAAGCGTCCACTGTGACGGCGGATGTGACGGTGGCTGCGGATGGCAGTGGAAACTATAAGACAGTGGGGGAGGCGGTGGCGTCGGCGCCGGAGAGGAGTAGTAAAAGGTACATAATAAGGATAAAAGCAGGAGTATACAAGGAAAACGTGGAGGTGCCGAAGAAGAAGACAAACATAATGTTCGTGGGAGATGGGAGGACCAATACCATCATCACCGCCAGTCGGAATGTGGTTGATGGCAGCACAACCTTCCACTCTGCCACTGTTGCGGTGGTGGGAGACGGGTTCCTAGCGAGGGACATAACTTTCCAGAACACAGCAGGGCCATCAAAGCACCAAGCAGTGGCACTTCGTGTGGGATCAGATCTATCGGCATTCTACAGGTGTGACGTGCTTGCATATCAGGACACCCTCTATGTTCACTCCCTCCGCCAGTTCTTCGTCGGCTGTCTCGTTGCTGGCACTGTTGACTTCATCTTCGGAAATGCTGCTGCTGTCTTGCAGGACTGTGACATCCACGCCCGTCGCCCAAACTCAGGTCAGAGGAACATGGTCACCGCTCAAGGCCGAGATGACCCTAACCAAAACACTGGCATTGTCATCCAGAAGTGCAGGATCGGTGCAACCTCGGATCTAAAGCCCGTCCAGAGCAGCTTCCCTACTTATCTGGGGAGGCCATGGAAGGAGTACTCCAGGACCGTTGTCATGCAGACAAGTATCAGTGATGTGATCAACCCAGCTGGGTGGTACCCTTGGAATGGCAATTTTGCTCTGGACACCCTCTTCTATGCCGAGTATCAGAACACAGGGGCAGGTGCAGACACCTCCAAGAGGGTGAACTGGAAGGGCTTCAAGGTGATCACCAGTGCAAGTGAGGCCCAGGCTTTTACTGCCGGCAGTTTTATTGGGGGAAGTAGTTGGTTGCCTTCCACCGGCTTTCCCTTCTCTCTGGGTCTCTAA 1101 54.86 MIKNLTDTDMAAAASAAGRQLREEEEEATATAIEWPEWLSAGDRRLLQASTVTADVTVAADGSGNYKTVGEAVASAPERSSKRYIIRIKAGVYKENVEVPKKKTNIMFVGDGRTNTIITASRNVVDGSTTFHSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDVLAYQDTLYVHSLRQFFVGCLVAGTVDFIFGNAAAVLQDCDIHARRPNSGQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLKPVQSSFPTYLGRPWKEYSRTVVMQTSISDVINPAGWYPWNGNFALDTLFYAEYQNTGAGADTSKRVNWKGFKVITSASEAQAFTAGSFIGGSSWLPSTGFPFSLGL* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 308010 311935 + Vvi11g11 Vvi11g11 771452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g11 366 PANTHER PECTINESTERASE 1 365 - -
Vvi11g11 366 ProSitePatterns Pectinesterase signature 2. 199 208 IPR033131 -
Vvi11g11 366 PANTHER PECTINESTERASE 1 365 - -
Vvi11g11 366 Pfam Pectinesterase 55 351 IPR000070 GO:0030599|GO:0042545
Vvi11g11 366 Gene3D - 48 366 IPR012334 -
Vvi11g11 366 SUPERFAMILY Pectin lyase-like 50 365 IPR011050 -
Vvi11g11 366 ProSitePatterns Pectinesterase signature 1. 80 99 IPR018040 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g18 Vvi11g11 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g11 K01051 - vvi:104880619 701.049