Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g114 | ATGGATGGTGGACCGCAGTACAATCCTCGAACTGTAGAAGAGGTTTTCAGGGATTTTAAGGGTCGCAGAGCGGGCATGATCAAAGCCCTCACCACTGATGTTGAAGAGTTCTACCAGCAATGCGATCCCGAGAAGGAAAATCTTTGCCTTTATGGATTCCCTAATGAACTGTGGGAAGTTAATTTACCTGCTGAAGAGGTGCCGCCTGAGCTCCCTGAACCTGCCTTAGGTATTAATTTTGCCAGAGATGGGATGCAAGAAAAGGACTGGTTGTCTCTGGTTGCTGTGCACAGTGATGCTTGGTTACTTGCTGTGGCCTTCTATTTTGGTGCCAGGTTTGGTTTTGATAAAGCTGACAGGAAACGTCTTTTCAATATGATTAATGATCTTCCAACAATATTTGAGGTTGTGACTGGAGCTGCAAAGAAACAAGTAAAGGAGAAGTCATCAGTTTCGAACCATAGTAGCAACAAATCCAAGTCAAACTCGAAAGTGAGAGGATCTGAATCAGCTAAATATTTAAAGGGTGGGCAGCCAAAGGATGAGGAAGAAGGATTGGATGAGGTAGATGAGGAGGAGCATGGGGATACCTTGTGTGGTGCTTGCGGAGAGAACTATGCTTCAGATGAATTCTGGATATGCTGTGACATATGTGAGAAATGGTTCCATGGGAAGTGTGTGAAGATCACCCCTGCGAGGGCTGAGCACATCAAACAGTACAAGTGCCCCTCATGCAGCAACAAGAGAGCAAGGCCTTGA | 759 | 45.72 | MDGGPQYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNELWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGAAKKQVKEKSSVSNHSSNKSKSNSKVRGSESAKYLKGGQPKDEEEGLDEVDEEEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* | 253 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1192127 | 1198924 | + | Vvi11g114 | Vvi11g114 | 771555 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g114 | 252 | CDD | PHD_AL_plant | 198 | 248 | IPR044104 | - | |
Vvi11g114 | 252 | Pfam | Alfin | 11 | 139 | IPR021998 | GO:0006355|GO:0042393 | |
Vvi11g114 | 252 | SMART | PHD_3 | 198 | 246 | IPR001965 | - | |
Vvi11g114 | 252 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 189 | 247 | IPR013083 | - | |
Vvi11g114 | 252 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 3 | 252 | - | - | |
Vvi11g114 | 252 | PANTHER | CPG BINDING PROTEIN | 3 | 252 | IPR045104 | GO:0006355|GO:0042393 | |
Vvi11g114 | 252 | ProSitePatterns | Zinc finger PHD-type signature. | 199 | 245 | IPR019786 | - | |
Vvi11g114 | 252 | MobiDBLite | consensus disorder prediction | 146 | 191 | - | - | |
Vvi11g114 | 252 | Pfam | PHD-finger | 199 | 248 | IPR019787 | - | |
Vvi11g114 | 252 | ProSiteProfiles | Zinc finger PHD-type profile. | 196 | 248 | IPR019787 | - | |
Vvi11g114 | 252 | SUPERFAMILY | FYVE/PHD zinc finger | 190 | 249 | IPR011011 | - | |
Vvi11g114 | 252 | MobiDBLite | consensus disorder prediction | 150 | 168 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13705 | PF12165 | Alfin | 5.80E-70 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g114 | - | - | vvi:100852794 | 503.442 |