Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g114 ATGGATGGTGGACCGCAGTACAATCCTCGAACTGTAGAAGAGGTTTTCAGGGATTTTAAGGGTCGCAGAGCGGGCATGATCAAAGCCCTCACCACTGATGTTGAAGAGTTCTACCAGCAATGCGATCCCGAGAAGGAAAATCTTTGCCTTTATGGATTCCCTAATGAACTGTGGGAAGTTAATTTACCTGCTGAAGAGGTGCCGCCTGAGCTCCCTGAACCTGCCTTAGGTATTAATTTTGCCAGAGATGGGATGCAAGAAAAGGACTGGTTGTCTCTGGTTGCTGTGCACAGTGATGCTTGGTTACTTGCTGTGGCCTTCTATTTTGGTGCCAGGTTTGGTTTTGATAAAGCTGACAGGAAACGTCTTTTCAATATGATTAATGATCTTCCAACAATATTTGAGGTTGTGACTGGAGCTGCAAAGAAACAAGTAAAGGAGAAGTCATCAGTTTCGAACCATAGTAGCAACAAATCCAAGTCAAACTCGAAAGTGAGAGGATCTGAATCAGCTAAATATTTAAAGGGTGGGCAGCCAAAGGATGAGGAAGAAGGATTGGATGAGGTAGATGAGGAGGAGCATGGGGATACCTTGTGTGGTGCTTGCGGAGAGAACTATGCTTCAGATGAATTCTGGATATGCTGTGACATATGTGAGAAATGGTTCCATGGGAAGTGTGTGAAGATCACCCCTGCGAGGGCTGAGCACATCAAACAGTACAAGTGCCCCTCATGCAGCAACAAGAGAGCAAGGCCTTGA 759 45.72 MDGGPQYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNELWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGAAKKQVKEKSSVSNHSSNKSKSNSKVRGSESAKYLKGGQPKDEEEGLDEVDEEEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1192127 1198924 + Vvi11g114 Vvi11g114 771555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g114 252 CDD PHD_AL_plant 198 248 IPR044104 -
Vvi11g114 252 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Vvi11g114 252 SMART PHD_3 198 246 IPR001965 -
Vvi11g114 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 247 IPR013083 -
Vvi11g114 252 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 252 - -
Vvi11g114 252 PANTHER CPG BINDING PROTEIN 3 252 IPR045104 GO:0006355|GO:0042393
Vvi11g114 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Vvi11g114 252 MobiDBLite consensus disorder prediction 146 191 - -
Vvi11g114 252 Pfam PHD-finger 199 248 IPR019787 -
Vvi11g114 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Vvi11g114 252 SUPERFAMILY FYVE/PHD zinc finger 190 249 IPR011011 -
Vvi11g114 252 MobiDBLite consensus disorder prediction 150 168 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g139 Vvi11g114 ECH
Vvi9g122 Vvi11g114 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13705 PF12165 Alfin 5.80E-70 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g114 - - vvi:100852794 503.442