Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g116 | ATGACCTTAGAAGCTTCATTGAATGCATTGACACCTCCAATGTTTGATGGAATAAATTATCAAGTGTGGGCTGTCCGTATGGAAGCCTACCTTGATGCTAGTGATCTGTGGGAAGCTGTTAGTGAGGAATATGAAGTTCCTCCTTTGTCCGACAATCCAACTATAGCTCAGATAAAACTACACAATGAGAGGAGGCAAAGGAAATCAAAGGTAAAAGCTAGTCTATTTGCAGTTGTCTCATCTACAATTTTCACCAGAATCATGACACTGAAGACAACAAATGAAATATGGAACTTCCTGAAGAAGGAATATGAAGGAAATGAACGAGTCAAAGGTATGCAAGTGTTGAACCTGATTAGAGAATTTGAGATGCAAAGGATGAAAGAATCAGAAACAATCAAGGATTACTCAGACAAACTTCTTAGTATTGTTAACAAAGTAAGACTTCTTGGTGTTGACTTTTCTAATTCTAGAATAGTTCAGAAAATTTTTATAACAGTTTCTGAAAAGTTTGAGAATACAATATCATCTCTAGAAAACTCAAAAGATGTGTCAAGTATTACCTTGGCAGAGCTGTTGAATGCATTACAGGCTCAAGAACAAAGGAGGCTTATGAGACAAGAAGGATCTGTGGAGGAGAACCCCTTCTCCATATTGGGGGAGTCTCGTCATACTCTTCCGGCGAGTTTTTCCAAGGCTGCTATGCTTGTCCGAGCGAATACTCTGATGCAAGGGTATTCGGGTATTCGGTGGGAGATACTTGAGGCCATGGCCAAGCTGATAAACCTCAATTTGATCCCTAAACTGCCTTTGAGGGGGACCATCACTGCTTCTGGGGACCTTGTGCCCTTATCTTATATTGCTGGAGTATTAACTGGGAGGCATAATTCCAAGGTTGTGACGCCTGAGGGGGAAGAAATCACGGCCATGGAAGCTCTGAAGAGAGCTGGCATTGAAGCCCCTTTTCAGCTGCAGGCGAAGGAAGGTCTGGCTCTTGTGAATGGGACTGCTGTTGGGTCAGCGGTGGCCGCAACGGTTTGTTTTGATGCCAACATCTTGGGGCTCCTTGCGGAGCCTAAACAAGACCGGTATGCGCTCAGAACTTCTCCCCAGTGGCTGGGGCCTCAGATTGAGGTGATTCGCATGGCAACACATGCAATTGAGAGGGAAATCAATTCTGTCAACGACAACCCTTTGATCGATGTCTCTCGGGACCTTGCTCTTCATGGAGGGAACTTCCAAGGGACCCCTATTGGTGTTTCCATGGACAATCTCCGGATTGCCATTGCAGCAATTGGGAAGCTCATGTTTGCTCAATTCTCGGAACTGGTCTGTGACTATTATAATGGTGGGTTGCCTTCCAATTTGAGTGGCGGCCCCAACCCGAGCTTGGACTATGGCTTCAAAGGTGCTGAGATAGCCATGGCTGCCTACTGCTCCGAGCTTCAATACCTGGCGAACCCGGTCACAACACACGTGCAGAGCGCTGAACAACACAATCAGGATGTGAATTCTCTGGGATTAATCTCTGCAAGGAAGAGTGCTGAAGCAGTGGAGATCCTAAAGCTCATGTCTGCAACTTACATGGTGGCACTTTGCCAGGCAGTTGACCTGAGACACCTAGAAGAAAACATGAGGGAAGTAGTGAAACATCTCATCACCCAAGTAGCAAGAAAAACCCTTTACACAGATGAAGATGGGACGCTGCTAGAATCTCGTTTCTGCGAGAAAGAACTCCAGCAGGTCGTCGAAAACTTGCCAGTTTTCTCCTATATCGACGATCCCACTAATCCTTCATACACTTTTTTGCCTCAACTCCGAGATGTACTAGTTGAAAGAGCTCTCAAAGACCCCAAATCCACCGACTCTGCGGGCTATTCCATTTTCAAGCGCATCCCCATATTTCAAGAGGAGCTGAAGGAGAGACTGATTGAGGAGATATCAAAAGCAAGAGAAAGGTTTGATAATGGAGATTTCCCAGTACCAAACAGAATCAAGAAATGCAGGACTTACCCCATATACGGATTTGTGAGGAAAGAAGTGGGAACCAAGCTCCTTAGTGGTGAAAACAAGGTGATGGGAACCAAGCTCCTTAGTGGTGAAAACAAGGTGAGTCCCGGAGAGGATATAGAGAAGGTTTATGAGGCGATCAATGATGGGAAGTTGGGAGATGTGCTGATGAAGTGCTTGTCATTTTGGAGAGGCACGTCGGGGCCTTTCACGCCGAGGCCTAGTGGGTTGTCTTCTCCGGCGCAGTTTAATCCGGAGTATTGGGGTTGGTTTGAGAAGCTGAGGTCTCCTTCTTCAGCTTCGAATGGGAGAGTGAATTGGGACCAGCTCTAA | 2343 | 45.92 | MTLEASLNALTPPMFDGINYQVWAVRMEAYLDASDLWEAVSEEYEVPPLSDNPTIAQIKLHNERRQRKSKVKASLFAVVSSTIFTRIMTLKTTNEIWNFLKKEYEGNERVKGMQVLNLIREFEMQRMKESETIKDYSDKLLSIVNKVRLLGVDFSNSRIVQKIFITVSEKFENTISSLENSKDVSSITLAELLNALQAQEQRRLMRQEGSVEENPFSILGESRHTLPASFSKAAMLVRANTLMQGYSGIRWEILEAMAKLINLNLIPKLPLRGTITASGDLVPLSYIAGVLTGRHNSKVVTPEGEEITAMEALKRAGIEAPFQLQAKEGLALVNGTAVGSAVAATVCFDANILGLLAEPKQDRYALRTSPQWLGPQIEVIRMATHAIEREINSVNDNPLIDVSRDLALHGGNFQGTPIGVSMDNLRIAIAAIGKLMFAQFSELVCDYYNGGLPSNLSGGPNPSLDYGFKGAEIAMAAYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKSAEAVEILKLMSATYMVALCQAVDLRHLEENMREVVKHLITQVARKTLYTDEDGTLLESRFCEKELQQVVENLPVFSYIDDPTNPSYTFLPQLRDVLVERALKDPKSTDSAGYSIFKRIPIFQEELKERLIEEISKARERFDNGDFPVPNRIKKCRTYPIYGFVRKEVGTKLLSGENKVMGTKLLSGENKVSPGEDIEKVYEAINDGKLGDVLMKCLSFWRGTSGPFTPRPSGLSSPAQFNPEYWGWFEKLRSPSSASNGRVNWDQL* | 781 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1205754 | 1213113 | + | Vvi11g116 | Vvi11g116 | 771557 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g116 | 780 | Gene3D | Fumarase/aspartase (Central domain) | 357 | 735 | - | - | |
Vvi11g116 | 780 | Pfam | gag-polypeptide of LTR copia-type | 65 | 204 | - | - | |
Vvi11g116 | 780 | Pfam | Aromatic amino acid lyase | 224 | 355 | IPR001106 | - | |
Vvi11g116 | 780 | Pfam | Aromatic amino acid lyase | 359 | 550 | IPR001106 | - | |
Vvi11g116 | 780 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 273 | 289 | IPR022313 | GO:0016841 | |
Vvi11g116 | 780 | CDD | PAL-HAL | 225 | 539 | IPR001106 | - | |
Vvi11g116 | 780 | TIGRFAM | phe_am_lyase: phenylalanine ammonia-lyase | 359 | 730 | IPR005922 | GO:0005737|GO:0006559|GO:0016841 | |
Vvi11g116 | 780 | Gene3D | - | 180 | 336 | IPR024083 | - | |
Vvi11g116 | 780 | PANTHER | HISTIDINE AMMONIA-LYASE | 692 | 736 | IPR001106 | - | |
Vvi11g116 | 780 | PANTHER | HISTIDINE AMMONIA-LYASE | 357 | 692 | IPR001106 | - | |
Vvi11g116 | 780 | PANTHER | HISTIDINE AMMONIA-LYASE | 223 | 358 | IPR001106 | - | |
Vvi11g116 | 780 | PANTHER | PHENYLALANINE AMMONIA-LYASE | 692 | 736 | - | - | |
Vvi11g116 | 780 | PANTHER | PHENYLALANINE AMMONIA-LYASE | 223 | 358 | - | - | |
Vvi11g116 | 780 | PANTHER | PHENYLALANINE AMMONIA-LYASE | 357 | 692 | - | - | |
Vvi11g116 | 780 | Gene3D | - | 542 | 663 | IPR023144 | - | |
Vvi11g116 | 780 | SUPERFAMILY | L-aspartase-like | 221 | 740 | IPR008948 | GO:0003824 | |
Vvi11g116 | 780 | Pfam | Domain of unknown function (DUF4219) | 15 | 41 | IPR025314 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g116 | K10775 | - | vvi:100255939 | 821.617 |