Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g116 ATGACCTTAGAAGCTTCATTGAATGCATTGACACCTCCAATGTTTGATGGAATAAATTATCAAGTGTGGGCTGTCCGTATGGAAGCCTACCTTGATGCTAGTGATCTGTGGGAAGCTGTTAGTGAGGAATATGAAGTTCCTCCTTTGTCCGACAATCCAACTATAGCTCAGATAAAACTACACAATGAGAGGAGGCAAAGGAAATCAAAGGTAAAAGCTAGTCTATTTGCAGTTGTCTCATCTACAATTTTCACCAGAATCATGACACTGAAGACAACAAATGAAATATGGAACTTCCTGAAGAAGGAATATGAAGGAAATGAACGAGTCAAAGGTATGCAAGTGTTGAACCTGATTAGAGAATTTGAGATGCAAAGGATGAAAGAATCAGAAACAATCAAGGATTACTCAGACAAACTTCTTAGTATTGTTAACAAAGTAAGACTTCTTGGTGTTGACTTTTCTAATTCTAGAATAGTTCAGAAAATTTTTATAACAGTTTCTGAAAAGTTTGAGAATACAATATCATCTCTAGAAAACTCAAAAGATGTGTCAAGTATTACCTTGGCAGAGCTGTTGAATGCATTACAGGCTCAAGAACAAAGGAGGCTTATGAGACAAGAAGGATCTGTGGAGGAGAACCCCTTCTCCATATTGGGGGAGTCTCGTCATACTCTTCCGGCGAGTTTTTCCAAGGCTGCTATGCTTGTCCGAGCGAATACTCTGATGCAAGGGTATTCGGGTATTCGGTGGGAGATACTTGAGGCCATGGCCAAGCTGATAAACCTCAATTTGATCCCTAAACTGCCTTTGAGGGGGACCATCACTGCTTCTGGGGACCTTGTGCCCTTATCTTATATTGCTGGAGTATTAACTGGGAGGCATAATTCCAAGGTTGTGACGCCTGAGGGGGAAGAAATCACGGCCATGGAAGCTCTGAAGAGAGCTGGCATTGAAGCCCCTTTTCAGCTGCAGGCGAAGGAAGGTCTGGCTCTTGTGAATGGGACTGCTGTTGGGTCAGCGGTGGCCGCAACGGTTTGTTTTGATGCCAACATCTTGGGGCTCCTTGCGGAGCCTAAACAAGACCGGTATGCGCTCAGAACTTCTCCCCAGTGGCTGGGGCCTCAGATTGAGGTGATTCGCATGGCAACACATGCAATTGAGAGGGAAATCAATTCTGTCAACGACAACCCTTTGATCGATGTCTCTCGGGACCTTGCTCTTCATGGAGGGAACTTCCAAGGGACCCCTATTGGTGTTTCCATGGACAATCTCCGGATTGCCATTGCAGCAATTGGGAAGCTCATGTTTGCTCAATTCTCGGAACTGGTCTGTGACTATTATAATGGTGGGTTGCCTTCCAATTTGAGTGGCGGCCCCAACCCGAGCTTGGACTATGGCTTCAAAGGTGCTGAGATAGCCATGGCTGCCTACTGCTCCGAGCTTCAATACCTGGCGAACCCGGTCACAACACACGTGCAGAGCGCTGAACAACACAATCAGGATGTGAATTCTCTGGGATTAATCTCTGCAAGGAAGAGTGCTGAAGCAGTGGAGATCCTAAAGCTCATGTCTGCAACTTACATGGTGGCACTTTGCCAGGCAGTTGACCTGAGACACCTAGAAGAAAACATGAGGGAAGTAGTGAAACATCTCATCACCCAAGTAGCAAGAAAAACCCTTTACACAGATGAAGATGGGACGCTGCTAGAATCTCGTTTCTGCGAGAAAGAACTCCAGCAGGTCGTCGAAAACTTGCCAGTTTTCTCCTATATCGACGATCCCACTAATCCTTCATACACTTTTTTGCCTCAACTCCGAGATGTACTAGTTGAAAGAGCTCTCAAAGACCCCAAATCCACCGACTCTGCGGGCTATTCCATTTTCAAGCGCATCCCCATATTTCAAGAGGAGCTGAAGGAGAGACTGATTGAGGAGATATCAAAAGCAAGAGAAAGGTTTGATAATGGAGATTTCCCAGTACCAAACAGAATCAAGAAATGCAGGACTTACCCCATATACGGATTTGTGAGGAAAGAAGTGGGAACCAAGCTCCTTAGTGGTGAAAACAAGGTGATGGGAACCAAGCTCCTTAGTGGTGAAAACAAGGTGAGTCCCGGAGAGGATATAGAGAAGGTTTATGAGGCGATCAATGATGGGAAGTTGGGAGATGTGCTGATGAAGTGCTTGTCATTTTGGAGAGGCACGTCGGGGCCTTTCACGCCGAGGCCTAGTGGGTTGTCTTCTCCGGCGCAGTTTAATCCGGAGTATTGGGGTTGGTTTGAGAAGCTGAGGTCTCCTTCTTCAGCTTCGAATGGGAGAGTGAATTGGGACCAGCTCTAA 2343 45.92 MTLEASLNALTPPMFDGINYQVWAVRMEAYLDASDLWEAVSEEYEVPPLSDNPTIAQIKLHNERRQRKSKVKASLFAVVSSTIFTRIMTLKTTNEIWNFLKKEYEGNERVKGMQVLNLIREFEMQRMKESETIKDYSDKLLSIVNKVRLLGVDFSNSRIVQKIFITVSEKFENTISSLENSKDVSSITLAELLNALQAQEQRRLMRQEGSVEENPFSILGESRHTLPASFSKAAMLVRANTLMQGYSGIRWEILEAMAKLINLNLIPKLPLRGTITASGDLVPLSYIAGVLTGRHNSKVVTPEGEEITAMEALKRAGIEAPFQLQAKEGLALVNGTAVGSAVAATVCFDANILGLLAEPKQDRYALRTSPQWLGPQIEVIRMATHAIEREINSVNDNPLIDVSRDLALHGGNFQGTPIGVSMDNLRIAIAAIGKLMFAQFSELVCDYYNGGLPSNLSGGPNPSLDYGFKGAEIAMAAYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKSAEAVEILKLMSATYMVALCQAVDLRHLEENMREVVKHLITQVARKTLYTDEDGTLLESRFCEKELQQVVENLPVFSYIDDPTNPSYTFLPQLRDVLVERALKDPKSTDSAGYSIFKRIPIFQEELKERLIEEISKARERFDNGDFPVPNRIKKCRTYPIYGFVRKEVGTKLLSGENKVMGTKLLSGENKVSPGEDIEKVYEAINDGKLGDVLMKCLSFWRGTSGPFTPRPSGLSSPAQFNPEYWGWFEKLRSPSSASNGRVNWDQL* 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1205754 1213113 + Vvi11g116 Vvi11g116 771557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g116 780 Gene3D Fumarase/aspartase (Central domain) 357 735 - -
Vvi11g116 780 Pfam gag-polypeptide of LTR copia-type 65 204 - -
Vvi11g116 780 Pfam Aromatic amino acid lyase 224 355 IPR001106 -
Vvi11g116 780 Pfam Aromatic amino acid lyase 359 550 IPR001106 -
Vvi11g116 780 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 273 289 IPR022313 GO:0016841
Vvi11g116 780 CDD PAL-HAL 225 539 IPR001106 -
Vvi11g116 780 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 359 730 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vvi11g116 780 Gene3D - 180 336 IPR024083 -
Vvi11g116 780 PANTHER HISTIDINE AMMONIA-LYASE 692 736 IPR001106 -
Vvi11g116 780 PANTHER HISTIDINE AMMONIA-LYASE 357 692 IPR001106 -
Vvi11g116 780 PANTHER HISTIDINE AMMONIA-LYASE 223 358 IPR001106 -
Vvi11g116 780 PANTHER PHENYLALANINE AMMONIA-LYASE 692 736 - -
Vvi11g116 780 PANTHER PHENYLALANINE AMMONIA-LYASE 223 358 - -
Vvi11g116 780 PANTHER PHENYLALANINE AMMONIA-LYASE 357 692 - -
Vvi11g116 780 Gene3D - 542 663 IPR023144 -
Vvi11g116 780 SUPERFAMILY L-aspartase-like 221 740 IPR008948 GO:0003824
Vvi11g116 780 Pfam Domain of unknown function (DUF4219) 15 41 IPR025314 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g116 K10775 - vvi:100255939 821.617