Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g12 ATGAAGGGGCGGGCCAATCTGTCAGGGGTCCTCTTAGAAATAAGGGACTCCCAGAAACTGAAAGATGCGAGAGCCTTTCTCAGCGCATCCCTCACAAACAAGGTTACATGCTTAGAAGGCCTGGATTCTGCCGCTGGTCCTTCCAAGCCAACGTTGGTGAATTCCATAGTTGCTGCTTACAAGCATGTGAGTAATTGTCTCTCGGTTCTGTCTAAGTCAACCCCACAAAAAGGCCCCATCAATCGCCGCCTTATGGGTGCCCCAGCATGGGCGTCCCGCCGGATATTGCAGAGCTCCGGTGACGAGTATGACCCCAGTGAGGTGCTTACTGTGGCTGCGGATGGAACTGGGAACTTCACCACCGTCACTGATGCAATAAATTTTGCTCCCAATAACAGCAATGACAGAATAATTATCTATGTCAGGGAAGGGGTTTATGAGGAAAATGTTGATATTCCAAGCCATAAGACCAATATTGTTTTTCTGGGAGATGGAAGTGATGTTACCTTCATTACTGGAAGCAGAAGTGTGGTGGATGGCTGGACTACTTTCAGATCTGCAACTGTTGCCGTCTCTGGGGAGGGATTTCTGGCACGCGACATAACCTTCGAGAACAGGGCAGGACCAGAGAAGCACCAAGCAGTTGCCCTTCGCATAAATGCCGACTTAGCAGCAGTGTACAAATGCACCATTCTAGGTTACCAGGACACATTGTATGTGCATTCGTTTAGACAATTTTACAGAGAGTGTGACATATTTGGGACAATAGATTTCATATTTGGAAATGCAGCTGTTGTTTTCCAGGCTTGCAACATTGTAGCCAGAATGCCAATGGCTGGCCAATTCACTGTTGTAACAGCACAATCCAGGGACACCTCAGATGAGGACACTGGAATCTCAATACAGAACTTTTATCTTGAGTCCTACATTGATGACTTCATTGATCCATCTGGGTGGACCGAATGGAATGGAAATGAAGGCTTGGACACTTTATATTATGGAGAGTATGACAATAATGGACCTGGGTCAGGGACAGAGAATCGAGTTACTTGGCAAGGGTATCATGTGATGGAAGATAACGATGCCTATAATTTCACAGTATCTGAGTTTATTACAGGTGATGAATGGCTGGACTCAACATACTTCCCTTACGATGATGGGATTTAA 1167 46.1 MKGRANLSGVLLEIRDSQKLKDARAFLSASLTNKVTCLEGLDSAAGPSKPTLVNSIVAAYKHVSNCLSVLSKSTPQKGPINRRLMGAPAWASRRILQSSGDEYDPSEVLTVAADGTGNFTTVTDAINFAPNNSNDRIIIYVREGVYEENVDIPSHKTNIVFLGDGSDVTFITGSRSVVDGWTTFRSATVAVSGEGFLARDITFENRAGPEKHQAVALRINADLAAVYKCTILGYQDTLYVHSFRQFYRECDIFGTIDFIFGNAAVVFQACNIVARMPMAGQFTVVTAQSRDTSDEDTGISIQNFYLESYIDDFIDPSGWTEWNGNEGLDTLYYGEYDNNGPGSGTENRVTWQGYHVMEDNDAYNFTVSEFITGDEWLDSTYFPYDDGI* 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 312429 317760 + Vvi11g12 Vvi11g12 771453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g12 388 PANTHER PECTINESTERASE 305 387 - -
Vvi11g12 388 PANTHER PECTINESTERASE 6 304 - -
Vvi11g12 388 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 16 71 IPR035513 -
Vvi11g12 388 Gene3D Invertase/pectin methylesterase inhibitor family protein 4 72 IPR035513 -
Vvi11g12 388 SUPERFAMILY Pectin lyase-like 105 386 IPR011050 -
Vvi11g12 388 Pfam Pectinesterase 110 304 IPR000070 GO:0030599|GO:0042545
Vvi11g12 388 Pfam Pectinesterase 305 374 IPR000070 GO:0030599|GO:0042545
Vvi11g12 388 ProSitePatterns Pectinesterase signature 2. 252 261 IPR033131 -
Vvi11g12 388 PANTHER PECTINESTERASE 305 387 - -
Vvi11g12 388 PANTHER PECTINESTERASE 6 304 - -
Vvi11g12 388 Gene3D - 104 388 IPR012334 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g12 - - vvi:104880620 744.191