Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g125 ATGATTAATGATCTTCCAACAATATTTGAGGTTGTGACCGGAGCTGCAAAGAAACAAGTGAAGGAGAAGTCATCAGTTTCAAACCATAGCAGCAACAAATCCAAGTCAAAATCAAAAGTGAGAGGATCTGAATCAGCTAAATATTCAAAGGTTGGGCAGCCAAAGGATGAGGAAGAAGGTTTGGATGAGGTAGATGAGGAGGAGCATGGAGATACCTTGTGTGGTGCTTGTGGAGAGAACTATGCTTCAGATGAGTTCTGGATATGCTGCGACATATGTGAGAAATGGTTCCACGGAAGTGTGTGA 306 42.48 MINDLPTIFEVVTGAAKKQVKEKSSVSNHSSNKSKSKSKVRGSESAKYSKVGQPKDEEEGLDEVDEEEHGDTLCGACGENYASDEFWICCDICEKWFHGSV* 102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1315720 1316852 + Vvi11g125 Vvi11g125 771566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g125 101 SUPERFAMILY FYVE/PHD zinc finger 65 99 IPR011011 -
Vvi11g125 101 PANTHER CPG BINDING PROTEIN 1 100 IPR045104 GO:0006355|GO:0042393
Vvi11g125 101 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 1 100 - -
Vvi11g125 101 MobiDBLite consensus disorder prediction 37 57 - -
Vvi11g125 101 MobiDBLite consensus disorder prediction 16 68 - -
Vvi11g125 101 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 101 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g139 Vvi11g125 ECH
Vvi9g122 Vvi11g125 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g125 - - vvi:100852794 165.622