Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g126 ATGTCTATGTCTATCAATGGTGTTTCTCCTTCATTTCAGAGCTTTCGGCCTCCCACTCTCCCTCTACCTGTAGAGGAAGAGAACCCCTTCTGCATATTGGGGGAATCTCGTCATGTACTGGCTCCACCGCACTGGAAGAAGGCTGCTGAGGCCCTACAGTGTGGTCATTTTGATGAGGTGTGCGCCATGGTGTCGCAGTTTGCACATGCGCAAACTGTGGATATTCAGGGCACGGCTCTCACAGTGGCCCAGGTCACTGCTCTTGCACGTGGGGATCATGTTAGGGTCGCTCTCGATGAGGCGGCGGCCCGAGGCCGCGTGACGAGGAGTGCTGATTGGGTGGCTGAGAACATCTCTCGGGGCACGGATACGTACGGGGTGACTACTGGCTTCGGTGCCACTTCCCATCGGCGGACCAACAAGACCGCTGATCTTCAGACCGAGCTGATTCGGTTTCTCAACGCTGGAGTGATCGGGAAGGAGACTCTTCCGGCGAGTTTCTCCAAGGCTGCTATGCTTGTTCGAGCGAATACTTTGATGCAAGGGTATTCGGGCATTCGGTGGGAGATACTTGAGGCCATGGCCAAGCTGATAAACCTCAATTTGATCCCTAAACTGCCTTTGAGGGGGACCATCACTGCTTCTGGGGACCTTGTGCCATTGTCTTATATTGCTGGAGTATTAACTGGGAGGCATAATTCCAAGGTTGTGACGCCTGAGGGGGAAGAAATCACGGCCATGGAAGCTCTGAAGAGAGCTGGAATTGAAGCTCCTTTTCAGCTGCAGGCGAAGGAAGGTCTGGCTCTTGTGAATGGGACTGCTGTTGGGTCAGCGGTGGCCGCAACGGTTTGTTTTGACGCCAACATCTTGGGGCTCCTTGCGGAGCCTAAACAAGACCGGTATGCGCTCAGAACTTCTCCCCAGTGGCTGGGGCCTCAGATTGAGGTGATTCGCATGGCAACACATTCAATTGAGAGGGAAATCAATTCAGTCAACGACAACCCTTTGATCGATGTCTCTCGGGACCTTGCTCTTCATGGAGGGAACTTCCAAGGGACCCCTATTGGTGTTTCCATGGACAATCTCCGGATTGCCATTGCAGCAATTGGGAAGCTCATGTTTGCTCAATTCTCCGAGCTGGTCTGCGACTATTATAATGGTGGGTTGCCTTCCAATTTGAGCGGCGGCCCCAACCCGAGCTTGGACTATGGCTTCAAAGGTGCTGAGATAGCCATGGCTGCCTACTGCTCCGAGCTTCAATACCTGGCGAACCTGGTCACAACACACGTGCAGAGCGCTGAACAACACAATCAGGATGTGAATTCTCTGGGATTAATCTCTGCAAGGAAGAGTGCTGAAGCAGTGGAGATCCTAAATCTCATGTCTGCAACTTACATGGTGGCACTTTGCCAGGCAGTTGACCTGAGACACCTAGAAGAAAACATGAGGGAAGTAGTGAAACATCTCATCACCCAAGTAGCAAGAAAAACCCTTTACACAGATGAAGATGGGACGCTGCTAGAATCTCGTTTCTGCGAGAAAGAACTCCAGCAGGTCGTCGAAAACTTGCCAGTCTTCTCCTATATCGACGATCCCACTAATCCTTCATACACTTTTTTGCCTCAACTCCGAGATGTACTAGTTGAAAGAGCTCTCAAAGACCCCAAATCCACTAACTCTGCAGGCTATTCCATTTTCAAGCGCATCCCCATATTTCAAGAGGAGCTGAAGGAGAGACTGATTGAGGAGATATCAAAAGCAAGAGAAAGGTTTGATAATGGAGATTTCCCAATACCAAACAGAATCAAGAAATGCAGGACTTACCCCATATACGGATTTGTGAGGAAAGAAGTGGGAACGAAGCTCCTTAGTGGTGAAAACAAGGTGAGTCCCGGAGAGGATATAGAGAAGTTTAATCCGGAGTACTGGGGTTGGTTTGAGAAGCTGAGGTCTCCTTCTTCAGCTTCGAATGGGAGAGTGAATTGGGACCGGCTCTGA 1998 50.65 MSMSINGVSPSFQSFRPPTLPLPVEEENPFCILGESRHVLAPPHWKKAAEALQCGHFDEVCAMVSQFAHAQTVDIQGTALTVAQVTALARGDHVRVALDEAAARGRVTRSADWVAENISRGTDTYGVTTGFGATSHRRTNKTADLQTELIRFLNAGVIGKETLPASFSKAAMLVRANTLMQGYSGIRWEILEAMAKLINLNLIPKLPLRGTITASGDLVPLSYIAGVLTGRHNSKVVTPEGEEITAMEALKRAGIEAPFQLQAKEGLALVNGTAVGSAVAATVCFDANILGLLAEPKQDRYALRTSPQWLGPQIEVIRMATHSIEREINSVNDNPLIDVSRDLALHGGNFQGTPIGVSMDNLRIAIAAIGKLMFAQFSELVCDYYNGGLPSNLSGGPNPSLDYGFKGAEIAMAAYCSELQYLANLVTTHVQSAEQHNQDVNSLGLISARKSAEAVEILNLMSATYMVALCQAVDLRHLEENMREVVKHLITQVARKTLYTDEDGTLLESRFCEKELQQVVENLPVFSYIDDPTNPSYTFLPQLRDVLVERALKDPKSTNSAGYSIFKRIPIFQEELKERLIEEISKARERFDNGDFPIPNRIKKCRTYPIYGFVRKEVGTKLLSGENKVSPGEDIEKFNPEYWGWFEKLRSPSSASNGRVNWDRL* 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1318993 1321292 + Vvi11g126 Vvi11g126 771567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g126 665 SUPERFAMILY L-aspartase-like 42 638 IPR008948 GO:0003824
Vvi11g126 665 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 210 226 IPR022313 GO:0016841
Vvi11g126 665 PANTHER HISTIDINE AMMONIA-LYASE 46 295 IPR001106 -
Vvi11g126 665 PANTHER HISTIDINE AMMONIA-LYASE 294 638 IPR001106 -
Vvi11g126 665 CDD PAL-HAL 80 476 IPR001106 -
Vvi11g126 665 Pfam Aromatic amino acid lyase 296 487 IPR001106 -
Vvi11g126 665 Pfam Aromatic amino acid lyase 80 293 IPR001106 -
Vvi11g126 665 PANTHER PHENYLALANINE AMMONIA-LYASE 294 638 - -
Vvi11g126 665 PANTHER PHENYLALANINE AMMONIA-LYASE 46 295 - -
Vvi11g126 665 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 295 637 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vvi11g126 665 Gene3D Fumarase/aspartase (Central domain) 275 527 - -
Vvi11g126 665 Gene3D Fumarase/aspartase (Central domain) 592 641 - -
Vvi11g126 665 Gene3D - 34 273 IPR024083 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g126 K10775 - vvi:100255939 717.613