Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g126 | ATGTCTATGTCTATCAATGGTGTTTCTCCTTCATTTCAGAGCTTTCGGCCTCCCACTCTCCCTCTACCTGTAGAGGAAGAGAACCCCTTCTGCATATTGGGGGAATCTCGTCATGTACTGGCTCCACCGCACTGGAAGAAGGCTGCTGAGGCCCTACAGTGTGGTCATTTTGATGAGGTGTGCGCCATGGTGTCGCAGTTTGCACATGCGCAAACTGTGGATATTCAGGGCACGGCTCTCACAGTGGCCCAGGTCACTGCTCTTGCACGTGGGGATCATGTTAGGGTCGCTCTCGATGAGGCGGCGGCCCGAGGCCGCGTGACGAGGAGTGCTGATTGGGTGGCTGAGAACATCTCTCGGGGCACGGATACGTACGGGGTGACTACTGGCTTCGGTGCCACTTCCCATCGGCGGACCAACAAGACCGCTGATCTTCAGACCGAGCTGATTCGGTTTCTCAACGCTGGAGTGATCGGGAAGGAGACTCTTCCGGCGAGTTTCTCCAAGGCTGCTATGCTTGTTCGAGCGAATACTTTGATGCAAGGGTATTCGGGCATTCGGTGGGAGATACTTGAGGCCATGGCCAAGCTGATAAACCTCAATTTGATCCCTAAACTGCCTTTGAGGGGGACCATCACTGCTTCTGGGGACCTTGTGCCATTGTCTTATATTGCTGGAGTATTAACTGGGAGGCATAATTCCAAGGTTGTGACGCCTGAGGGGGAAGAAATCACGGCCATGGAAGCTCTGAAGAGAGCTGGAATTGAAGCTCCTTTTCAGCTGCAGGCGAAGGAAGGTCTGGCTCTTGTGAATGGGACTGCTGTTGGGTCAGCGGTGGCCGCAACGGTTTGTTTTGACGCCAACATCTTGGGGCTCCTTGCGGAGCCTAAACAAGACCGGTATGCGCTCAGAACTTCTCCCCAGTGGCTGGGGCCTCAGATTGAGGTGATTCGCATGGCAACACATTCAATTGAGAGGGAAATCAATTCAGTCAACGACAACCCTTTGATCGATGTCTCTCGGGACCTTGCTCTTCATGGAGGGAACTTCCAAGGGACCCCTATTGGTGTTTCCATGGACAATCTCCGGATTGCCATTGCAGCAATTGGGAAGCTCATGTTTGCTCAATTCTCCGAGCTGGTCTGCGACTATTATAATGGTGGGTTGCCTTCCAATTTGAGCGGCGGCCCCAACCCGAGCTTGGACTATGGCTTCAAAGGTGCTGAGATAGCCATGGCTGCCTACTGCTCCGAGCTTCAATACCTGGCGAACCTGGTCACAACACACGTGCAGAGCGCTGAACAACACAATCAGGATGTGAATTCTCTGGGATTAATCTCTGCAAGGAAGAGTGCTGAAGCAGTGGAGATCCTAAATCTCATGTCTGCAACTTACATGGTGGCACTTTGCCAGGCAGTTGACCTGAGACACCTAGAAGAAAACATGAGGGAAGTAGTGAAACATCTCATCACCCAAGTAGCAAGAAAAACCCTTTACACAGATGAAGATGGGACGCTGCTAGAATCTCGTTTCTGCGAGAAAGAACTCCAGCAGGTCGTCGAAAACTTGCCAGTCTTCTCCTATATCGACGATCCCACTAATCCTTCATACACTTTTTTGCCTCAACTCCGAGATGTACTAGTTGAAAGAGCTCTCAAAGACCCCAAATCCACTAACTCTGCAGGCTATTCCATTTTCAAGCGCATCCCCATATTTCAAGAGGAGCTGAAGGAGAGACTGATTGAGGAGATATCAAAAGCAAGAGAAAGGTTTGATAATGGAGATTTCCCAATACCAAACAGAATCAAGAAATGCAGGACTTACCCCATATACGGATTTGTGAGGAAAGAAGTGGGAACGAAGCTCCTTAGTGGTGAAAACAAGGTGAGTCCCGGAGAGGATATAGAGAAGTTTAATCCGGAGTACTGGGGTTGGTTTGAGAAGCTGAGGTCTCCTTCTTCAGCTTCGAATGGGAGAGTGAATTGGGACCGGCTCTGA | 1998 | 50.65 | MSMSINGVSPSFQSFRPPTLPLPVEEENPFCILGESRHVLAPPHWKKAAEALQCGHFDEVCAMVSQFAHAQTVDIQGTALTVAQVTALARGDHVRVALDEAAARGRVTRSADWVAENISRGTDTYGVTTGFGATSHRRTNKTADLQTELIRFLNAGVIGKETLPASFSKAAMLVRANTLMQGYSGIRWEILEAMAKLINLNLIPKLPLRGTITASGDLVPLSYIAGVLTGRHNSKVVTPEGEEITAMEALKRAGIEAPFQLQAKEGLALVNGTAVGSAVAATVCFDANILGLLAEPKQDRYALRTSPQWLGPQIEVIRMATHSIEREINSVNDNPLIDVSRDLALHGGNFQGTPIGVSMDNLRIAIAAIGKLMFAQFSELVCDYYNGGLPSNLSGGPNPSLDYGFKGAEIAMAAYCSELQYLANLVTTHVQSAEQHNQDVNSLGLISARKSAEAVEILNLMSATYMVALCQAVDLRHLEENMREVVKHLITQVARKTLYTDEDGTLLESRFCEKELQQVVENLPVFSYIDDPTNPSYTFLPQLRDVLVERALKDPKSTNSAGYSIFKRIPIFQEELKERLIEEISKARERFDNGDFPIPNRIKKCRTYPIYGFVRKEVGTKLLSGENKVSPGEDIEKFNPEYWGWFEKLRSPSSASNGRVNWDRL* | 666 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1318993 | 1321292 | + | Vvi11g126 | Vvi11g126 | 771567 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g126 | 665 | SUPERFAMILY | L-aspartase-like | 42 | 638 | IPR008948 | GO:0003824 | |
Vvi11g126 | 665 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 210 | 226 | IPR022313 | GO:0016841 | |
Vvi11g126 | 665 | PANTHER | HISTIDINE AMMONIA-LYASE | 46 | 295 | IPR001106 | - | |
Vvi11g126 | 665 | PANTHER | HISTIDINE AMMONIA-LYASE | 294 | 638 | IPR001106 | - | |
Vvi11g126 | 665 | CDD | PAL-HAL | 80 | 476 | IPR001106 | - | |
Vvi11g126 | 665 | Pfam | Aromatic amino acid lyase | 296 | 487 | IPR001106 | - | |
Vvi11g126 | 665 | Pfam | Aromatic amino acid lyase | 80 | 293 | IPR001106 | - | |
Vvi11g126 | 665 | PANTHER | PHENYLALANINE AMMONIA-LYASE | 294 | 638 | - | - | |
Vvi11g126 | 665 | PANTHER | PHENYLALANINE AMMONIA-LYASE | 46 | 295 | - | - | |
Vvi11g126 | 665 | TIGRFAM | phe_am_lyase: phenylalanine ammonia-lyase | 295 | 637 | IPR005922 | GO:0005737|GO:0006559|GO:0016841 | |
Vvi11g126 | 665 | Gene3D | Fumarase/aspartase (Central domain) | 275 | 527 | - | - | |
Vvi11g126 | 665 | Gene3D | Fumarase/aspartase (Central domain) | 592 | 641 | - | - | |
Vvi11g126 | 665 | Gene3D | - | 34 | 273 | IPR024083 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g126 | K10775 | - | vvi:100255939 | 717.613 |