Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g140 ATGAGGAGAGGGCCCTTAAACCCTAGCAATCTCAAGCTCACTCTCCCTCCTGATGAGGATTCATTGACTAAGTTCCTAACTCAGAGTGGGACTTTTATGGATGGTGATCTGCTGGTCAACAGGGATGGAGTTCGAATTGTGTCTAAGAGCGAAGCTGAAGTGCCACCACTTATAAAGCCCTCTGACAACCAGTTGAGCTTGGCTGACATAGACACGATTAAAGTGATTGGGAAGGGCGCCGGTGGAACTGTGCAATTGGTGCAACATAAGTGGACTGGTCAATTTTTTGCGTTGAAGGTTATTCAAATGAATATTCAGGAGGCTGCTCTCAAGCATATTGCACAGGAGCTAAAAATTAACCAGTCATCACAATGCCCATATGTTGTCGTGTGTTACAAGTCTTTCTATGATAATGGTGCCTTTTCTATTATCTTAGAGTACATGGATGGTGGATCTCTTTTAGATTTTCTGAAAAAGGTCAAATCAATTCCAGAGCCGTATCTTGCTGCCATCTGTAATCAGGTGCTCAAGGGTTTGTCGTATCTTCATCATGAAAGACACATCATCCATAGGGACTTAAAACCTTCTAACTTGTTAATAAATCACAGAGGAGAAGTGAAGATCACCGACTTTGGTGTGAGTGCAATACTTACAAGCACCTCTGGGCAGGCAAATACTTTTGTCGGCACGTACAACTATATGTCTCCAGAGAGAATTAGTGGAGGTAAGTATGGCTCCAAAAGTGACATTTGGAGCTTGGGGTTGGTTTTGCTCGAGTGTGCCACTGGTCAGTTCCCGTATTCTCCACCAGAGCAAGGGGAAGGATGGACCAGCTTTTATGAACTTATGGAAGCCATTGTTGACCAGCCACCGCCTTGTGCATCTACTAATCAATTTTCTGCAGAATTCTGCTCTTTCATTTCTGCATGCATACAGAAAGACCCAAATGACAGAAAGTCAGCGCATGAACTTATGGCACATCCTTTTATCAGCATGTACAGAGACTTGAATGTTGATCTTGCAACATACTTCACCAATGCAGGATCTCCACTCGCTACATTTTAA 1065 43.38 MRRGPLNPSNLKLTLPPDEDSLTKFLTQSGTFMDGDLLVNRDGVRIVSKSEAEVPPLIKPSDNQLSLADIDTIKVIGKGAGGTVQLVQHKWTGQFFALKVIQMNIQEAALKHIAQELKINQSSQCPYVVVCYKSFYDNGAFSIILEYMDGGSLLDFLKKVKSIPEPYLAAICNQVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAILTSTSGQANTFVGTYNYMSPERISGGKYGSKSDIWSLGLVLLECATGQFPYSPPEQGEGWTSFYELMEAIVDQPPPCASTNQFSAEFCSFISACIQKDPNDRKSAHELMAHPFISMYRDLNVDLATYFTNAGSPLATF* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1417438 1424337 + Vvi11g140 Vvi11g140 771581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g140 354 ProSiteProfiles Protein kinase domain profile. 70 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g140 354 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 8 353 - -
Vvi11g140 354 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Vvi11g140 354 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
Vvi11g140 354 SMART serkin_6 70 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g140 354 Pfam Protein kinase domain 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g140 354 SUPERFAMILY Protein kinase-like (PK-like) 63 338 IPR011009 -
Vvi11g140 354 PRINTS Tyrosine kinase catalytic domain signature 145 158 IPR001245 GO:0004672|GO:0006468
Vvi11g140 354 PRINTS Tyrosine kinase catalytic domain signature 182 200 IPR001245 GO:0004672|GO:0006468
Vvi11g140 354 PRINTS Tyrosine kinase catalytic domain signature 248 270 IPR001245 GO:0004672|GO:0006468
Vvi11g140 354 CDD PKc_MAPKK_plant_like 68 333 - -
Vvi11g140 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Vvi11g140 354 PANTHER MAP KINASE KINASE 8 353 - -
Vvi11g140 354 Gene3D Transferase(Phosphotransferase) domain 1 150 350 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g140 K20603 MKK2; mitogen-activated protein kinase kinase 2 [EC:2.7.12.2] - vvi:100247508 719.153
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g140 . Blo16g00976 . Bda11g01036 Bpe01g00601 . . Bma11g00589 Cmo10g00767 Cmo11g00726 . . . . Sed08g0891 Cpe04g01040 Cpe18g00340 Bhi02g01848 Tan09g1114 Cmetu09g0930 . . . . Cla11g00151 Cam11g0173 Cec11g0175 Cco11g0187 Clacu11g0310 Cmu11g0162 Cre11g0661 . . . Cone7ag0750 Lsi06g00302 Csa02g00036 Chy05g01452 Cme02g00272 . Blo14g00559 Bda02g00383 . . Bpe13g01246 . . Sed05g1512 . . Cma10g00741 Cma11g00712 Car10g00666 Car11g00592 . . Bhi06g01629 Tan08g0048 Cmetu04g1006 . Hepe08g2677 . . Cla03g01476 Cam03g1552 Cec03g1594 Cco03g1588 Clacu03g1576 Cmu03g2132 Cre03g1805 Lsi11g00177 Csa01g02954 Chy02g01249 Cme05g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi11g140 . 27 352 MAP Kinase Kinase Gene Family AT4G26070 69.9 2.1e-134 475.7
Vvi11g254 . 26 350 MAP Kinase Kinase Gene Family AT4G26070 57.0 7.7e-108 387.5
Vvi11g140 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 71.3 1.6e-134 476.1
Vvi11g254 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.5 3.2e-106 382.1
Vvi14g1310 . 35 518 MAP Kinase Kinase Gene Family AT5G40440 79.1 1.3e-228 789.3
Vvi9g955 . 91 343 MAP Kinase Kinase Gene Family AT1G51660 53.7 6.8e-86 314.7
Vvi9g955 . 136 335 MAP Kinase Kinase Gene Family AT3G21220 78.0 7.6e-87 317.8
Vvi11g254 . 1 355 MAP Kinase Kinase Gene Family AT5G56580 83.1 3.7e-169 591.3
Vvi11g140 . 7 351 MAP Kinase Kinase Gene Family AT5G56580 60.1 3.8e-118 421.8
Vvi17g168 . 1 219 MAP Kinase Kinase Gene Family AT1G18350 51.4 1.4e-60 230.3
Vvi9g955 . 135 316 MAP Kinase Kinase Gene Family AT1G18350 53.8 3.2e-52 202.6
Vvi17g168 . 1 219 MAP Kinase Kinase Gene Family AT1G73500 55.5 9.5e-65 244.2
Vvi9g955 . 135 313 MAP Kinase Kinase Gene Family AT1G73500 54.7 3.8e-53 205.7
Vvi9g955 . 136 313 MAP Kinase Kinase Gene Family AT1G32320 50.5 1.7e-42 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76035 PF00069 Pkinase 7.60E-70 CL0016 Vvi PK