Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g140 | ATGAGGAGAGGGCCCTTAAACCCTAGCAATCTCAAGCTCACTCTCCCTCCTGATGAGGATTCATTGACTAAGTTCCTAACTCAGAGTGGGACTTTTATGGATGGTGATCTGCTGGTCAACAGGGATGGAGTTCGAATTGTGTCTAAGAGCGAAGCTGAAGTGCCACCACTTATAAAGCCCTCTGACAACCAGTTGAGCTTGGCTGACATAGACACGATTAAAGTGATTGGGAAGGGCGCCGGTGGAACTGTGCAATTGGTGCAACATAAGTGGACTGGTCAATTTTTTGCGTTGAAGGTTATTCAAATGAATATTCAGGAGGCTGCTCTCAAGCATATTGCACAGGAGCTAAAAATTAACCAGTCATCACAATGCCCATATGTTGTCGTGTGTTACAAGTCTTTCTATGATAATGGTGCCTTTTCTATTATCTTAGAGTACATGGATGGTGGATCTCTTTTAGATTTTCTGAAAAAGGTCAAATCAATTCCAGAGCCGTATCTTGCTGCCATCTGTAATCAGGTGCTCAAGGGTTTGTCGTATCTTCATCATGAAAGACACATCATCCATAGGGACTTAAAACCTTCTAACTTGTTAATAAATCACAGAGGAGAAGTGAAGATCACCGACTTTGGTGTGAGTGCAATACTTACAAGCACCTCTGGGCAGGCAAATACTTTTGTCGGCACGTACAACTATATGTCTCCAGAGAGAATTAGTGGAGGTAAGTATGGCTCCAAAAGTGACATTTGGAGCTTGGGGTTGGTTTTGCTCGAGTGTGCCACTGGTCAGTTCCCGTATTCTCCACCAGAGCAAGGGGAAGGATGGACCAGCTTTTATGAACTTATGGAAGCCATTGTTGACCAGCCACCGCCTTGTGCATCTACTAATCAATTTTCTGCAGAATTCTGCTCTTTCATTTCTGCATGCATACAGAAAGACCCAAATGACAGAAAGTCAGCGCATGAACTTATGGCACATCCTTTTATCAGCATGTACAGAGACTTGAATGTTGATCTTGCAACATACTTCACCAATGCAGGATCTCCACTCGCTACATTTTAA | 1065 | 43.38 | MRRGPLNPSNLKLTLPPDEDSLTKFLTQSGTFMDGDLLVNRDGVRIVSKSEAEVPPLIKPSDNQLSLADIDTIKVIGKGAGGTVQLVQHKWTGQFFALKVIQMNIQEAALKHIAQELKINQSSQCPYVVVCYKSFYDNGAFSIILEYMDGGSLLDFLKKVKSIPEPYLAAICNQVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAILTSTSGQANTFVGTYNYMSPERISGGKYGSKSDIWSLGLVLLECATGQFPYSPPEQGEGWTSFYELMEAIVDQPPPCASTNQFSAEFCSFISACIQKDPNDRKSAHELMAHPFISMYRDLNVDLATYFTNAGSPLATF* | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1417438 | 1424337 | + | Vvi11g140 | Vvi11g140 | 771581 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g140 | 354 | ProSiteProfiles | Protein kinase domain profile. | 70 | 330 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi11g140 | 354 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 8 | 353 | - | - | |
Vvi11g140 | 354 | ProSitePatterns | Protein kinases ATP-binding region signature. | 76 | 99 | IPR017441 | GO:0005524 | |
Vvi11g140 | 354 | Gene3D | Phosphorylase Kinase; domain 1 | 47 | 149 | - | - | |
Vvi11g140 | 354 | SMART | serkin_6 | 70 | 330 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi11g140 | 354 | Pfam | Protein kinase domain | 72 | 330 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi11g140 | 354 | SUPERFAMILY | Protein kinase-like (PK-like) | 63 | 338 | IPR011009 | - | |
Vvi11g140 | 354 | PRINTS | Tyrosine kinase catalytic domain signature | 145 | 158 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi11g140 | 354 | PRINTS | Tyrosine kinase catalytic domain signature | 182 | 200 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi11g140 | 354 | PRINTS | Tyrosine kinase catalytic domain signature | 248 | 270 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi11g140 | 354 | CDD | PKc_MAPKK_plant_like | 68 | 333 | - | - | |
Vvi11g140 | 354 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 188 | 200 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi11g140 | 354 | PANTHER | MAP KINASE KINASE | 8 | 353 | - | - | |
Vvi11g140 | 354 | Gene3D | Transferase(Phosphotransferase) domain 1 | 150 | 350 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76035 | PF00069 | Pkinase | 7.60E-70 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g140 | K20603 | - | vvi:100247508 | 719.153 |