Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g140 ATGAGGAGAGGGCCCTTAAACCCTAGCAATCTCAAGCTCACTCTCCCTCCTGATGAGGATTCATTGACTAAGTTCCTAACTCAGAGTGGGACTTTTATGGATGGTGATCTGCTGGTCAACAGGGATGGAGTTCGAATTGTGTCTAAGAGCGAAGCTGAAGTGCCACCACTTATAAAGCCCTCTGACAACCAGTTGAGCTTGGCTGACATAGACACGATTAAAGTGATTGGGAAGGGCGCCGGTGGAACTGTGCAATTGGTGCAACATAAGTGGACTGGTCAATTTTTTGCGTTGAAGGTTATTCAAATGAATATTCAGGAGGCTGCTCTCAAGCATATTGCACAGGAGCTAAAAATTAACCAGTCATCACAATGCCCATATGTTGTCGTGTGTTACAAGTCTTTCTATGATAATGGTGCCTTTTCTATTATCTTAGAGTACATGGATGGTGGATCTCTTTTAGATTTTCTGAAAAAGGTCAAATCAATTCCAGAGCCGTATCTTGCTGCCATCTGTAATCAGGTGCTCAAGGGTTTGTCGTATCTTCATCATGAAAGACACATCATCCATAGGGACTTAAAACCTTCTAACTTGTTAATAAATCACAGAGGAGAAGTGAAGATCACCGACTTTGGTGTGAGTGCAATACTTACAAGCACCTCTGGGCAGGCAAATACTTTTGTCGGCACGTACAACTATATGTCTCCAGAGAGAATTAGTGGAGGTAAGTATGGCTCCAAAAGTGACATTTGGAGCTTGGGGTTGGTTTTGCTCGAGTGTGCCACTGGTCAGTTCCCGTATTCTCCACCAGAGCAAGGGGAAGGATGGACCAGCTTTTATGAACTTATGGAAGCCATTGTTGACCAGCCACCGCCTTGTGCATCTACTAATCAATTTTCTGCAGAATTCTGCTCTTTCATTTCTGCATGCATACAGAAAGACCCAAATGACAGAAAGTCAGCGCATGAACTTATGGCACATCCTTTTATCAGCATGTACAGAGACTTGAATGTTGATCTTGCAACATACTTCACCAATGCAGGATCTCCACTCGCTACATTTTAA 1065 43.38 MRRGPLNPSNLKLTLPPDEDSLTKFLTQSGTFMDGDLLVNRDGVRIVSKSEAEVPPLIKPSDNQLSLADIDTIKVIGKGAGGTVQLVQHKWTGQFFALKVIQMNIQEAALKHIAQELKINQSSQCPYVVVCYKSFYDNGAFSIILEYMDGGSLLDFLKKVKSIPEPYLAAICNQVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAILTSTSGQANTFVGTYNYMSPERISGGKYGSKSDIWSLGLVLLECATGQFPYSPPEQGEGWTSFYELMEAIVDQPPPCASTNQFSAEFCSFISACIQKDPNDRKSAHELMAHPFISMYRDLNVDLATYFTNAGSPLATF* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1417438 1424337 + Vvi11g140 Vvi11g140 771581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g140 354 ProSiteProfiles Protein kinase domain profile. 70 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g140 354 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 8 353 - -
Vvi11g140 354 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Vvi11g140 354 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
Vvi11g140 354 SMART serkin_6 70 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g140 354 Pfam Protein kinase domain 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g140 354 SUPERFAMILY Protein kinase-like (PK-like) 63 338 IPR011009 -
Vvi11g140 354 PRINTS Tyrosine kinase catalytic domain signature 145 158 IPR001245 GO:0004672|GO:0006468
Vvi11g140 354 PRINTS Tyrosine kinase catalytic domain signature 182 200 IPR001245 GO:0004672|GO:0006468
Vvi11g140 354 PRINTS Tyrosine kinase catalytic domain signature 248 270 IPR001245 GO:0004672|GO:0006468
Vvi11g140 354 CDD PKc_MAPKK_plant_like 68 333 - -
Vvi11g140 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Vvi11g140 354 PANTHER MAP KINASE KINASE 8 353 - -
Vvi11g140 354 Gene3D Transferase(Phosphotransferase) domain 1 150 350 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76035 PF00069 Pkinase 7.60E-70 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g140 K20603 - vvi:100247508 719.153