Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g141 ATGGAAGAGGTATCCCCTGCACTACCTTGTTGTCAGAGCACCACCCTTATATGGTGGTCTGACCCAAAATTGTTTACCAGGGTTTTGGAGTTGACTAATGAAAGGAGGATGAATAGAACAGTTAGCGACAGCGTTTTTGAATTCAATTGTGTACCCCTTTGGGGATTCACATCCATCTGTGGAAGGAGACTGGAGATGGAAGATGCTGTTGCAGCTGTGCCCAATTTCTTGAAAATTCCTATTCAAACACTAACAGATGGCCTGCTTCTCAATGGCATGAACCCAGAATTAGATTATTTAACCGCGCATTTCTTTGGAGTCTACGATGGACATGGGGGCTGTCAGGTTGCGAACTATTGCAGGGATCGGTTGCATTTGGCTTTGGCTGAGGAGGTAGAACTGTTGAAAGAGAGCTTGTGTAATGGAAGTGCTGGAGGTAATTGGCAAGAACAGTGGGAGAAAGTCTTCTCCAATTGTTTTCTGAAAGTTGATTCTGTGATTGGAGGGGATAGTTCTACACTTGTTGCCTCTGAAACTGTTGGATCAACTGCTGTGGTTACCATTATTTGTCAAACTCACATCATAGTCGCAAATTGCGGTGATTCAAGGGCTGTACTGTGTCGTGGAAAAGTACCTGTGCCATTGTCAATAGATCACAAACCAAGTAGAGAAGACGAATATGCAAGGATAGAAGCTGCAGGAGGCAAGATCATACAGTGGGACGGCTTACGTGTATGTGGCGTTCTTGCAATGTCTAGGTCCATTGGTGATCGATACTTGAAACCATGGATCATCCCAGATCCAGAAGTAATGTACATTCCCCGAGAAAAAGAAGATGAGTGCCTTATTCTTGCCAGTGACGGGTTATGGGATGTCATGACGAACCAGGAGGTTTGTGACACAGCAAGAAGACGAATACTCCTCTGGCATAAAAAGAATGGTCATAACCCACCTGCAGAAAGGGGCAGGGGAGTTGATCCTGCAGCTCAAGCTGCAGCAGAGTGTCTCTCAAAGCTTGCTCTCCAAAAGGGAAGCAAAGACAACATAACCGTGGTCGTGGTGGACTTGAAACCTCGAAGGAAACTGAAGAGAAAAACTCAGCAGTAA 1107 45.35 MEEVSPALPCCQSTTLIWWSDPKLFTRVLELTNERRMNRTVSDSVFEFNCVPLWGFTSICGRRLEMEDAVAAVPNFLKIPIQTLTDGLLLNGMNPELDYLTAHFFGVYDGHGGCQVANYCRDRLHLALAEEVELLKESLCNGSAGGNWQEQWEKVFSNCFLKVDSVIGGDSSTLVASETVGSTAVVTIICQTHIIVANCGDSRAVLCRGKVPVPLSIDHKPSREDEYARIEAAGGKIIQWDGLRVCGVLAMSRSIGDRYLKPWIIPDPEVMYIPREKEDECLILASDGLWDVMTNQEVCDTARRRILLWHKKNGHNPPAERGRGVDPAAQAAAECLSKLALQKGSKDNITVVVVDLKPRRKLKRKTQQ* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1424760 1427979 - Vvi11g141 Vvi11g141 771582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g141 368 Gene3D - 40 366 IPR036457 -
Vvi11g141 368 PANTHER ALPHABET, ISOFORM E-RELATED 20 366 - -
Vvi11g141 368 PANTHER PROTEIN PHOSPHATASE 2C 56 20 366 - -
Vvi11g141 368 CDD PP2Cc 55 356 IPR001932 -
Vvi11g141 368 SMART PP2C_4 43 354 IPR001932 -
Vvi11g141 368 SUPERFAMILY PP2C-like 44 358 IPR036457 -
Vvi11g141 368 ProSitePatterns PPM-type phosphatase domain signature. 104 112 IPR000222 GO:0043169
Vvi11g141 368 Pfam Protein phosphatase 2C 58 349 IPR001932 -
Vvi11g141 368 ProSiteProfiles PPM-type phosphatase domain profile. 53 356 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g118 Vvi11g141 ECH
Vvi9g142 Vvi11g141 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g141 K14497 - vvi:100267957 695.271