Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g143 ATGGAGAGGGTGGCTGCAGCCAAGCAGTTCATCGAGAGCCACTACAAAGCCCATATGAAGCTCATTCAGGAACGCAAGCAAAGGCGCTCGGTGCTGGAAAGAAGGTTAGCATCTTCAGATGTACCAGAAGAGGAACAAATCAATATAATTAAGGACTTGGAGCGCAAAGAGACAGAATATATGCGACTTAAACGGCACAAAATTTGTGTTGATGATTTTGAGAACCTAACTATTATAGGGAGAGGGGCTTTTGGAGAGGTCCGATTGTGTCGGGAGAGGTTATCTGGCAATATTTATGCCATGAAAAAGCTAAAGAAGTCGGAAATGCTAAGCAGGGGACAGGTGGAACATGTTAGAGCTGAAAGGAATTTGCTTGCAGAAGTTGACAGCCATTTCATTGTAAAACTTTATTATTCTTTTCAAGATGATGAGTACTTGTACTTAATTATGGAATATCTGCCTGGTGGTGACATGATGACTTTGCTGATGAGAGAAGAGACTTTAACTGAAACTGTGGCTAAGTTTTACGTAGCTCAAAGTGTCCTGGCCATAGAGTCCATTCATAAACATAACTACATTCACAGAGATATAAAGCCAGACAACCTTATATTGGACATAAATGGTCACATGAAGCTCTCTGACTTTGGCCTTTGCAAGCCTCTTGACTGTTCAAATCTAGCTGCTATAAATCAACATAGGGCCGTCAATTATGAACGCCTGAAGGAATCCATGGATGTTGATGAATCCTGTCCAAATTATGAGCATGTGAAACATTGGAAAAGTTCCCTTGAACAACTTCAGCAGTGGCAGAAGAGCAGGAGGACATTGGCATTCTCCACGGTAGGCACACCGGATTATATTGCTCCAGAAGTCTTACTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCACTAGGTGCAATTATGTATGAGATGCTTGTTGGATATCCCCCATTCTACTCTGATGACCCAATAACAACATGCAGAAAGATTGTGCATTGGAAAAATCACTTAAAATTTCCTGAGGAGGCAAGGTTGACCCCTGAAGCAAAGGATCTGATCTCGAGGATGCTTTCTGATGTGGACCATAGGCTCGGTACTAATGGGGCAGCAGAAATAAAAGCACATCCATGGTTCAAGGATGTTGAATGGGACAAACTCTACGAGATGGAGGCAGCATTTAAACCAGAGGTCAATGGAGAACTTGATACTCAGAATTTTATGAAATTTGATGAGGTGGATCCTCCAAAACCAACAAGAACTGGATCTGGAATGTCAAGGAAGCTGCTTTTAACTCCCAAAGATCTAAGTTTTGTGGGCTATACATACAAGAATTTTGATGCTATCAAAGCAGCACGCCATTCTTTTGGTATGCGACATTTGTTCTACAAAGAGTTACTTCTTAGTTTCGATTTCTTACTGTTGCATGCTATGCTTCATCAGACAAATCCTCTTAAGATGTTCCTTTTCTTCTTTTATTTTGCATGCATATAG 1497 41.22 MERVAAAKQFIESHYKAHMKLIQERKQRRSVLERRLASSDVPEEEQINIIKDLERKETEYMRLKRHKICVDDFENLTIIGRGAFGEVRLCRERLSGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVDSHFIVKLYYSFQDDEYLYLIMEYLPGGDMMTLLMREETLTETVAKFYVAQSVLAIESIHKHNYIHRDIKPDNLILDINGHMKLSDFGLCKPLDCSNLAAINQHRAVNYERLKESMDVDESCPNYEHVKHWKSSLEQLQQWQKSRRTLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNHLKFPEEARLTPEAKDLISRMLSDVDHRLGTNGAAEIKAHPWFKDVEWDKLYEMEAAFKPEVNGELDTQNFMKFDEVDPPKPTRTGSGMSRKLLLTPKDLSFVGYTYKNFDAIKAARHSFGMRHLFYKELLLSFDFLLLHAMLHQTNPLKMFLFFFYFACI* 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1448963 1458897 - Vvi11g143 Vvi11g143 771584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g143 498 Gene3D Transferase(Phosphotransferase) domain 1 157 225 - -
Vvi11g143 498 CDD STKc_NDR_like 71 445 - -
Vvi11g143 498 ProSiteProfiles AGC-kinase C-terminal domain profile. 381 454 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi11g143 498 Pfam Protein kinase C terminal domain 399 444 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vvi11g143 498 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Vvi11g143 498 ProSiteProfiles Protein kinase domain profile. 73 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g143 498 Gene3D Phosphorylase Kinase; domain 1 48 156 - -
Vvi11g143 498 SMART serkin_6 73 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g143 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Vvi11g143 498 Pfam Protein kinase domain 73 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g143 498 Pfam Protein kinase domain 277 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g143 498 Gene3D Phosphorylase Kinase; domain 1 399 409 - -
Vvi11g143 498 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 493 - -
Vvi11g143 498 SUPERFAMILY Protein kinase-like (PK-like) 56 425 IPR011009 -
Vvi11g143 498 SMART pkinase_C_6 381 446 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi11g143 498 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 493 - -
Vvi11g143 498 Gene3D Transferase(Phosphotransferase) domain 1 274 398 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g116 Vvi11g143 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76036 PF00069 Pkinase 1.20E-42 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g143 K08790 - vvi:100252546 926.391