Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g143 | ATGGAGAGGGTGGCTGCAGCCAAGCAGTTCATCGAGAGCCACTACAAAGCCCATATGAAGCTCATTCAGGAACGCAAGCAAAGGCGCTCGGTGCTGGAAAGAAGGTTAGCATCTTCAGATGTACCAGAAGAGGAACAAATCAATATAATTAAGGACTTGGAGCGCAAAGAGACAGAATATATGCGACTTAAACGGCACAAAATTTGTGTTGATGATTTTGAGAACCTAACTATTATAGGGAGAGGGGCTTTTGGAGAGGTCCGATTGTGTCGGGAGAGGTTATCTGGCAATATTTATGCCATGAAAAAGCTAAAGAAGTCGGAAATGCTAAGCAGGGGACAGGTGGAACATGTTAGAGCTGAAAGGAATTTGCTTGCAGAAGTTGACAGCCATTTCATTGTAAAACTTTATTATTCTTTTCAAGATGATGAGTACTTGTACTTAATTATGGAATATCTGCCTGGTGGTGACATGATGACTTTGCTGATGAGAGAAGAGACTTTAACTGAAACTGTGGCTAAGTTTTACGTAGCTCAAAGTGTCCTGGCCATAGAGTCCATTCATAAACATAACTACATTCACAGAGATATAAAGCCAGACAACCTTATATTGGACATAAATGGTCACATGAAGCTCTCTGACTTTGGCCTTTGCAAGCCTCTTGACTGTTCAAATCTAGCTGCTATAAATCAACATAGGGCCGTCAATTATGAACGCCTGAAGGAATCCATGGATGTTGATGAATCCTGTCCAAATTATGAGCATGTGAAACATTGGAAAAGTTCCCTTGAACAACTTCAGCAGTGGCAGAAGAGCAGGAGGACATTGGCATTCTCCACGGTAGGCACACCGGATTATATTGCTCCAGAAGTCTTACTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCACTAGGTGCAATTATGTATGAGATGCTTGTTGGATATCCCCCATTCTACTCTGATGACCCAATAACAACATGCAGAAAGATTGTGCATTGGAAAAATCACTTAAAATTTCCTGAGGAGGCAAGGTTGACCCCTGAAGCAAAGGATCTGATCTCGAGGATGCTTTCTGATGTGGACCATAGGCTCGGTACTAATGGGGCAGCAGAAATAAAAGCACATCCATGGTTCAAGGATGTTGAATGGGACAAACTCTACGAGATGGAGGCAGCATTTAAACCAGAGGTCAATGGAGAACTTGATACTCAGAATTTTATGAAATTTGATGAGGTGGATCCTCCAAAACCAACAAGAACTGGATCTGGAATGTCAAGGAAGCTGCTTTTAACTCCCAAAGATCTAAGTTTTGTGGGCTATACATACAAGAATTTTGATGCTATCAAAGCAGCACGCCATTCTTTTGGTATGCGACATTTGTTCTACAAAGAGTTACTTCTTAGTTTCGATTTCTTACTGTTGCATGCTATGCTTCATCAGACAAATCCTCTTAAGATGTTCCTTTTCTTCTTTTATTTTGCATGCATATAG | 1497 | 41.22 | MERVAAAKQFIESHYKAHMKLIQERKQRRSVLERRLASSDVPEEEQINIIKDLERKETEYMRLKRHKICVDDFENLTIIGRGAFGEVRLCRERLSGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVDSHFIVKLYYSFQDDEYLYLIMEYLPGGDMMTLLMREETLTETVAKFYVAQSVLAIESIHKHNYIHRDIKPDNLILDINGHMKLSDFGLCKPLDCSNLAAINQHRAVNYERLKESMDVDESCPNYEHVKHWKSSLEQLQQWQKSRRTLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNHLKFPEEARLTPEAKDLISRMLSDVDHRLGTNGAAEIKAHPWFKDVEWDKLYEMEAAFKPEVNGELDTQNFMKFDEVDPPKPTRTGSGMSRKLLLTPKDLSFVGYTYKNFDAIKAARHSFGMRHLFYKELLLSFDFLLLHAMLHQTNPLKMFLFFFYFACI* | 499 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1448963 | 1458897 | - | Vvi11g143 | Vvi11g143 | 771584 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g143 | 498 | Gene3D | Transferase(Phosphotransferase) domain 1 | 157 | 225 | - | - | |
Vvi11g143 | 498 | CDD | STKc_NDR_like | 71 | 445 | - | - | |
Vvi11g143 | 498 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 381 | 454 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Vvi11g143 | 498 | Pfam | Protein kinase C terminal domain | 399 | 444 | IPR017892 | GO:0004674|GO:0005524|GO:0006468 | |
Vvi11g143 | 498 | ProSitePatterns | Protein kinases ATP-binding region signature. | 79 | 102 | IPR017441 | GO:0005524 | |
Vvi11g143 | 498 | ProSiteProfiles | Protein kinase domain profile. | 73 | 380 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi11g143 | 498 | Gene3D | Phosphorylase Kinase; domain 1 | 48 | 156 | - | - | |
Vvi11g143 | 498 | SMART | serkin_6 | 73 | 380 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi11g143 | 498 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 192 | 204 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi11g143 | 498 | Pfam | Protein kinase domain | 73 | 223 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi11g143 | 498 | Pfam | Protein kinase domain | 277 | 380 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi11g143 | 498 | Gene3D | Phosphorylase Kinase; domain 1 | 399 | 409 | - | - | |
Vvi11g143 | 498 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 1 | 493 | - | - | |
Vvi11g143 | 498 | SUPERFAMILY | Protein kinase-like (PK-like) | 56 | 425 | IPR011009 | - | |
Vvi11g143 | 498 | SMART | pkinase_C_6 | 381 | 446 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Vvi11g143 | 498 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 1 | 493 | - | - | |
Vvi11g143 | 498 | Gene3D | Transferase(Phosphotransferase) domain 1 | 274 | 398 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76036 | PF00069 | Pkinase | 1.20E-42 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g143 | K08790 | - | vvi:100252546 | 926.391 |