Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g145 ATGACAGCTGAGAAGTCAACGCTGATATCTGTGGCGGCGATGACGTCAGTCGCCGTGGCCGTTAACGGCGGCCCCGGCAGCAGAGGCAACGGAAGCCGCCGGGCCGTTCGTTGGGCGGTGGAGAATCTTTCGGCTGATGCCGATACGTTAATCTTAATTCACGTCATGCCGGCAATCACTTCAATCCCAACTCCATCAGGAGAGCAAATACCCATCAATGAATTGGACGCAAATGTGGTGGAATTGTATGTCCAGGACATGAGAGCCAAGTTTGAACAAATCTTTCTCCCATTTAAGAAACTATGCAAAACTCTAAATGTAGAAACTTTGGTGCTGGAAGGTAAAAATCCTGCAACAGTGCTTCTAAGATACGCCTCTGAGTCAGGGATTAAAAGCTTGGTTTTGGGCTCTTGCTTTTCAAACTGCATTTTGAGGAAGCTAAGGGGACCAGGTGTACCATCAACTGTCCTAAGATATGCTCCTGACACTTGCGATGTTTATGTTATATCTAGACGCAGACTTAGAAAAAAATCAACCAATCCCTCATCCTTCAGCAAGACGAGCTCTAGACACTGGTTTGTCACTCGAAGAAAACTTACTGAGGGTCCCAATGGTATTAATGAACAAATATCTGGTTTTTCCACTTTGGGGTCCAAAGTTCGTAAAATCTTTGGAGCTTCTTCATTATCCGAACTTAGTTTCTCAAGTTCTCAAGCATTTACACATCAGGGTTCTACAAATGCTAGTATAGATCAGGAAAGTTATCATCAAAACCTGGGAGATAATAATCAGGAGACTCTTACAGTTAAAAGTTGCAATTCCATGGCTTCTACCAAAAGTGAGCAGGCTGAAGTAGAAAAATTGCGGCTAGAATTACAAGATGCTGTTTCCATGTATGAAAGAGCATGTGAAGAGCTGGTCCATACCCAAAGCAAGGTCCAAATACTTTCTTCTGAATGCATTGAAGAAAGAAGAAAAGTGAATGCTGCCCTGGAAAGAGAAGGAACTTTCAGGAAAATTGCTTCAGAAGAGAAAGCAAAGCATTTGGAAACAATGGAGGAGGTTGAGGTGGCAAAAAACTTGCTTGCTATAGAGGTCAATGGTAGGCAGATAGCCGAACTACATGCTCTGAAAGAGTCCTCAGAAAAACAGAAAATCGTTGATGAACTCTTCTCAAGCGACAAGAGGTACAGAAAGTACACAAAGGATGAAATAGAGGTAGCAACAGATTTTTTCTCTGAGAGCAGGGTGATTGGCGAAGGAGGGTATGGGAAGGTCTACAAGGGTAACCTTGATCATACCCCAGTAGCTGTCAAGGTTATTCATTCTGATGCATGTGACAGGAAAGAGGAGTTCCTAAGAGAGGTTGAAGTCCTTAGCCACCTACGCCATCCACACATGGTTTTGCTTCTAGGAGCCTGTCCTGAGAGTGGTTGTCTGGTTTATGAATACATGGAAAATGGAAGCCTGGACAAACATATTTTCCGCCAAGACGGAAGGATGCCTCTTCCTTGGTTTGTTCGGTTCCAAATTATCTTTGAGGTGGCTTGCGGGCTTGCATTCTTACACAGCTCAAAGCCAGAGCCTATTGTTCATCGTGATCTAAAACCGGGTAATATCTTGTTAGACAGAAACTATGTGAGCAAAATTGGAGATGTTGGGCTGGCTAAGCTCATTTCAGATGCCGTGCCTGACAACATCACAGAGTACAGAGACTCCATTCTAGCTGGTACACTCTTCTACATGGATCCTGAGTATCAGAGAACTGGCACCATTCGACCCAAATCAGATGTATACGCTTTTGGTGTCATAATCCTCCAATTATTGGCAGCTCGCCATCCAAATGGCCTTATATTGACAGTTGAAAATGCCATTACTAACGGTACTTTTGCAGACACGTTGGATAAGTCAATTGCAGATTGGCCAATTGCTGAAACAGAAGAACTAGCTTGTCTTGCACTAAAATGTTCCAAACTCAGATGCCGGGATAGGCCAGATCTTGAGACTGAAGTTCTGCCTGTTCTCAAAAGACTTGCAGATTTTGCAGATGCTAGTAAAAGGGTAGAAATAAACAATACTTCCGCGCCCAAGCACTACTTCTGTCCAATCCTTCAGGAAGTAATGGAGGATCCACACATTGCAGCTGATGGTTTTACATACGAGCATCGAGCGATCAAGGCATGGCTCGATAGACACGATGTTTCACCAGTGACAAAGTGGACGTTCCAGCACAAAATGCTAACTCCAAACCAGACATTACGTTCTGCAATACAAGAATGGAGGTGTCGTGTAGAATCATCCAGTAACTGA 2310 43.85 MTAEKSTLISVAAMTSVAVAVNGGPGSRGNGSRRAVRWAVENLSADADTLILIHVMPAITSIPTPSGEQIPINELDANVVELYVQDMRAKFEQIFLPFKKLCKTLNVETLVLEGKNPATVLLRYASESGIKSLVLGSCFSNCILRKLRGPGVPSTVLRYAPDTCDVYVISRRRLRKKSTNPSSFSKTSSRHWFVTRRKLTEGPNGINEQISGFSTLGSKVRKIFGASSLSELSFSSSQAFTHQGSTNASIDQESYHQNLGDNNQETLTVKSCNSMASTKSEQAEVEKLRLELQDAVSMYERACEELVHTQSKVQILSSECIEERRKVNAALEREGTFRKIASEEKAKHLETMEEVEVAKNLLAIEVNGRQIAELHALKESSEKQKIVDELFSSDKRYRKYTKDEIEVATDFFSESRVIGEGGYGKVYKGNLDHTPVAVKVIHSDACDRKEEFLREVEVLSHLRHPHMVLLLGACPESGCLVYEYMENGSLDKHIFRQDGRMPLPWFVRFQIIFEVACGLAFLHSSKPEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAVPDNITEYRDSILAGTLFYMDPEYQRTGTIRPKSDVYAFGVIILQLLAARHPNGLILTVENAITNGTFADTLDKSIADWPIAETEELACLALKCSKLRCRDRPDLETEVLPVLKRLADFADASKRVEINNTSAPKHYFCPILQEVMEDPHIAADGFTYEHRAIKAWLDRHDVSPVTKWTFQHKMLTPNQTLRSAIQEWRCRVESSSN* 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1470781 1476384 - Vvi11g145 Vvi11g145 771586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g145 769 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 14 170 - -
Vvi11g145 769 CDD STK_N 16 171 - -
Vvi11g145 769 Gene3D Phosphorylase Kinase; domain 1 391 484 - -
Vvi11g145 769 SMART Ubox_2 698 760 IPR003613 GO:0004842|GO:0016567
Vvi11g145 769 PANTHER OS02G0152300 PROTEIN 15 763 - -
Vvi11g145 769 CDD RING-Ubox_WDSUB1_like 699 739 - -
Vvi11g145 769 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 15 763 - -
Vvi11g145 769 ProSiteProfiles Protein kinase domain profile. 412 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g145 769 SUPERFAMILY RING/U-box 687 763 - -
Vvi11g145 769 Pfam U-box domain 695 762 IPR003613 GO:0004842|GO:0016567
Vvi11g145 769 Coils Coil 285 305 - -
Vvi11g145 769 ProSiteProfiles U-box domain profile. 694 767 IPR003613 GO:0004842|GO:0016567
Vvi11g145 769 SUPERFAMILY Protein kinase-like (PK-like) 395 668 IPR011009 -
Vvi11g145 769 SMART serkin_6 412 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g145 769 Pfam Universal stress protein family 31 161 IPR006016 -
Vvi11g145 769 Pfam Protein tyrosine and serine/threonine kinase 415 668 IPR001245 GO:0004672|GO:0006468
Vvi11g145 769 Gene3D HUPs 12 180 IPR014729 -
Vvi11g145 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Vvi11g145 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 696 767 IPR013083 -
Vvi11g145 769 ProSitePatterns Protein kinases ATP-binding region signature. 418 439 IPR017441 GO:0005524
Vvi11g145 769 Gene3D Transferase(Phosphotransferase) domain 1 485 695 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g112 Vvi11g145 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76037 PF07714 PK_Tyr_Ser-Thr 1.10E-40 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g145 - - vvi:100242304 1500.72