Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g152 ATGGGGAATCCGAAACAAAAATGGACTTCGGAGGAGGAGGAGGCGCTACGCGCCGGCGTAGCGAAGCACGGCACCGGTAAGTGGAAGAATATCCAGAAGGATCCGGAGTTCAACCATTTTCTGTTCACCCGTTCAAACATCGATCTGAAGGACAAATGGCGGAATATGAGTGTCAGTGCTAGTGGACAAGGTCCAAGGGAAAAATCACGGACTCCAAAAACAAAGGCCAACACAGATGCTCCCAGTGCTGCTACCGTGTCCAATCCACAAAATTCCAGTTCAGCTGCTCCTGTTACAGGTGATGCCTCAGCAGATGCCATGGATGATGCTTCAAAGAATATACTGGATGGGAAAAGCGCTCCAAGGTACAATGCAATGATTTTTGAAGCGCTTTCAGCCCTAAAAGAGCCAAATGGATCAGACACTAGTACGATTGTTAGCTTTATTGAGCAAAGACATGAGGTGCCACAAAACTTTAGGAGGTTATTAAGTTCAAGATTAAGACGGCTTGTTGCACAAGACAAACTTGAAAAGGTTCAAAACTGCTACAAGATAAAGAGAGATCCCTCATTTGGGACTAAAACACCTACCCCGAAACAGAAGGACATCAGACCTAGGCAGTCACAAAGCACAGATTATGTAGCCTCCATCGAGACGGTAGAAGAAGCAGCAGTGGCTGCTGCCTACAAGGTCGCTGAAGCAGAAAACAAGTCATTTGTAGCAGCTGAAGCAGTCAAGGAGGCAGAGAGGGTTGCAAAGATGGCTGAAGAGTCAGAAGCGATGCTACAGTTCACACTAGAGATACTTGAGAAATGTTCTCGTGGTGAAGTTGTGTACATAGCATAG 846 46.45 MGNPKQKWTSEEEEALRAGVAKHGTGKWKNIQKDPEFNHFLFTRSNIDLKDKWRNMSVSASGQGPREKSRTPKTKANTDAPSAATVSNPQNSSSAAPVTGDASADAMDDASKNILDGKSAPRYNAMIFEALSALKEPNGSDTSTIVSFIEQRHEVPQNFRRLLSSRLRRLVAQDKLEKVQNCYKIKRDPSFGTKTPTPKQKDIRPRQSQSTDYVASIETVEEAAVAAAYKVAEAENKSFVAAEAVKEAERVAKMAEESEAMLQFTLEILEKCSRGEVVYIA* 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1530191 1542903 + Vvi11g152 Vvi11g152 771593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g152 281 MobiDBLite consensus disorder prediction 52 105 - -
Vvi11g152 281 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Vvi11g152 281 Gene3D - 8 87 - -
Vvi11g152 281 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vvi11g152 281 PANTHER SINGLE MYB HISTONE 4 1 279 IPR044597 GO:0003691
Vvi11g152 281 Pfam linker histone H1 and H5 family 121 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi11g152 281 SMART sant 4 59 IPR001005 -
Vvi11g152 281 MobiDBLite consensus disorder prediction 75 99 - -
Vvi11g152 281 Gene3D - 117 202 IPR036388 -
Vvi11g152 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Vvi11g152 281 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 279 - -
Vvi11g152 281 MobiDBLite consensus disorder prediction 193 210 - -
Vvi11g152 281 MobiDBLite consensus disorder prediction 187 210 - -
Vvi11g152 281 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi11g152 281 Coils Coil 217 237 - -
Vvi11g152 281 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi11g152 281 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Vvi11g152 281 CDD SANT_TRF 6 56 - -
Vvi11g152 281 SUPERFAMILY Winged helix DNA-binding domain 116 199 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g152 K09422 MYBP; transcription factor MYB, plant - vvi:100254369 503.827
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g152 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi3g722 . 1 246 Single Myb Histone (SMH) Gene Family AT1G49950 62.2 7.8e-80 294.3
Vvi11g152 . 1 280 Single Myb Histone (SMH) Gene Family AT1G17520 50.7 1.3e-68 256.9
Vvi11g152 . 1 282 Single Myb Histone (SMH) Gene Family AT1G72740 50.9 2.5e-64 242.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013733 1 1 1 0 1 0 2 0 0 0 0 0 1 1 1 2 0 2 1 0 0 0 1 1 1 0 1 4 2 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13706 PF00538 Linker_histone 4.40E-11 CL0123 Vvi TF