Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g16 ATGTTCCATGTTCAAGCTGCTTCAAGAAATCACTGTGCTCTCCTCGCAGTTGTGTGCGGCAAAATCCCTGTTTCTGAGGATCAACAACAGCATCCATATCCCTTCCCGGAACTTGTTTCTTCCGGCCGCCTTGAGGTTCAGATTCTGAAAAATCCTAGTATCCATGAGTTTCAACGGTCACTTGAATCGTTGGAGCCAAATTTCCTTTACTTGCAAGGGGAGCAGCTTCCGGGTAGTGAAGAAATAGGATCTCTGACATGGGGAGGGGTGGACTTGTCCTCTGCAGAGGCGTTAGTTGAACTCTTTGGTCCCACATTGCCCACAACTGTTTATCTAGAGACCCCAAATGGTGAAAAATTAGCAAAGGCACTTCATTCTAAGGGTGTTTCTTATGTAATATATTGGAAAAATGCATTTTCTTGCTATGCAGCTTGTCATTTTCGTCAAGCACTGTTCTCTGTGGTGCAAAGTTCATGCAGCCATACGTGGGATGCATTCCAGCTTGCCCATGCATCCTTTAGGCTCTATTGTGTGCAAAACAACACCGTACCTTCCAACAACCAGAAAGTTAGTGGTAAGCTTGGACCCTGCCTTCTTGGAGACCCTCCCAAGATTAATGTTGTTCCTCCTGAGGTTGACGAGGAGGAAAGCTTGCCTGCAACTCTTCCTGTTATAAAGATATATGATGCTGATGTGAGCATGAGGTTTCTTGTTTGTGGAGCACCAAGCGCATTGGATGCATGTTTACTGGGATCTTTGGAGGATGGCCTCAATGCCCTCCTGTGCATTGAAATTCGCGGGAGTAAACTTCATAATCGTGTGAGTGCTCCACCACCACCTCTTCAAGCAGGGACATTTTCTCGTGGCGTAGTGACCATGCGATGCGACTTATCAACCTGTAGTTCTGCCCATATATCACTTTTAGTGTCTGGTAGTGCCCAGACTTGTTTAAATGATCAGCTGTTGGAGAGTTATATCAAGAATGAGCTTATTGAGAAGAGTCAGTTAGTCCATGCAGTACCCAGCTGTGAGGAAAGCAAATTGTCTTCATCTGAGCCTCGGAGGTCTGCATCAATAGCTTGTGGGGCTAGTGTATTTGAAGTTCGTATAAAGGTTCCAACATGGGCTTCACAGGTTTTGAGGCAGCTAGCACCAGATGTATCTTATCGCAGCTTAGTCACCCTGGGAATAGCTAGCATTCAAGGTTTATCTGTTGCTTCCTTTGAAAAAGATGATGCTGACCGCCTCCTCTTCTTTTGTACAAGGCATGCCAAACAACTCAATCAAAACAATTCTATTCTTCCTAGGCCTCCTAGCTGGTTAATAGCTCCTCCAGCTAGTCGGAAAAGGTCTGGGCCATGCCATGAAACCAAACCATCTGGATATAAAGTCTTGGGAGGTGTAAATGGAGGTGTTCTTCAACAGAAACCAAAGATTGCTGCAATGAGGCCAATTCCCCACACTCGCAATCATAAAATGCTGCCTTTTTCTGGAATTTCTGAGGCCAGCAGGTGTGATGGAGACCAAGCAAAGGGTAACTTGTCAGTTGTTCCAGCAAAGCACAATGGCACCACACCTGTCACACATCGCAAATTGTTGTCAAGCTCTTTCCAGGCCCAGCAGATTATTTCTTTGAACCCTCTACCTCTAAAGAAGCATGGTTGTGGCAGATCACCAATTCAGATTTGCTCAGAAGAGGAATTTCTCAGGGATGTAATGCAATTTTTGATTCTCCGAGGGCATACCCGCCTTGTCCCTCAAGGGGGGCTGGCTGAATTCCCTGATGCTATACTTAATGCAAAACGCCTTGACCTTTACAACTTGTATAGAGAGGTGGTTTCAAGGGGAGGCTTCCATGTAGGGAATGGCATCAACTGGAAAGGACAAGTTTTCTCAAAGATGCGAAATCACACATTGACTAATAGAATGACAGGTGTTGGGAATACTCTAAAAAGACATTATGAAACCTATCTTTTAGAATATGAATTAGCCCATGATGATGTAGATGGGGAATGCTGCTTGTTGTGTCACAGTAGTGCAGCAGGTGACTGGGTGAATTGTGGAATATGTGGTGAATGGGCTCATTTTGGGTGTGATCGGCGCCAGGGTCTTGGTGCCTTCAAGGACTATGCAAAAACAGATGGGCTGGAATACATTTGTCCCCACTGCAGCATAACAAATTTCCAGAAGAAGTCCCAGAAAACTGCAAACGGATATTAG 2220 45.23 MFHVQAASRNHCALLAVVCGKIPVSEDQQQHPYPFPELVSSGRLEVQILKNPSIHEFQRSLESLEPNFLYLQGEQLPGSEEIGSLTWGGVDLSSAEALVELFGPTLPTTVYLETPNGEKLAKALHSKGVSYVIYWKNAFSCYAACHFRQALFSVVQSSCSHTWDAFQLAHASFRLYCVQNNTVPSNNQKVSGKLGPCLLGDPPKINVVPPEVDEEESLPATLPVIKIYDADVSMRFLVCGAPSALDACLLGSLEDGLNALLCIEIRGSKLHNRVSAPPPPLQAGTFSRGVVTMRCDLSTCSSAHISLLVSGSAQTCLNDQLLESYIKNELIEKSQLVHAVPSCEESKLSSSEPRRSASIACGASVFEVRIKVPTWASQVLRQLAPDVSYRSLVTLGIASIQGLSVASFEKDDADRLLFFCTRHAKQLNQNNSILPRPPSWLIAPPASRKRSGPCHETKPSGYKVLGGVNGGVLQQKPKIAAMRPIPHTRNHKMLPFSGISEASRCDGDQAKGNLSVVPAKHNGTTPVTHRKLLSSSFQAQQIISLNPLPLKKHGCGRSPIQICSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLYNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFQKKSQKTANGY* 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 385441 395146 + Vvi11g16 Vvi11g16 771457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g16 739 SMART ARID_2 559 662 - -
Vvi11g16 739 CDD PHD_ARID4_like 672 723 - -
Vvi11g16 739 CDD ARID 564 662 - -
Vvi11g16 739 Gene3D - 560 665 IPR036431 GO:0003677
Vvi11g16 739 SUPERFAMILY FYVE/PHD zinc finger 662 728 IPR011011 -
Vvi11g16 739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 728 IPR013083 -
Vvi11g16 739 SUPERFAMILY ARID-like 563 677 IPR036431 GO:0003677
Vvi11g16 739 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 1 739 IPR042293 -
Vvi11g16 739 ProSiteProfiles ARID domain profile. 562 666 IPR001606 GO:0003677
Vvi11g16 739 Pfam ARID/BRIGHT DNA binding domain 565 662 IPR001606 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g16 - - - vvi:100262830 1498.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi9g26 Vvi11g16 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g16 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0835 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi5g902 . 49 388 ARID Transcription Factor Family AT1G04880 63.0 1.4e-109 393.7
Vvi18g36 . 149 416 ARID Transcription Factor Family AT1G20910 65.3 8.6e-95 344.4
Vvi4g1345 . 1 256 ARID Transcription Factor Family AT1G20910 63.2 2.4e-89 326.2
Vvi18g149 . 20 303 ARID Transcription Factor Family AT1G76110 51.8 4.7e-81 298.5
Vvi18g36 . 139 446 ARID Transcription Factor Family AT1G76510 68.3 3.7e-115 412.1
Vvi4g1345 . 1 286 ARID Transcription Factor Family AT1G76510 66.3 6.3e-107 384.8
Vvi11g16 ECH 1 738 ARID Transcription Factor Family AT3G43240 69.3 1.9e-305 1045.0
Vvi9g26 ECH 1 744 ARID Transcription Factor Family AT3G43240 66.5 1.4e-292 1002.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13707 PF01388 ARID 7.70E-14 CL0123 Vvi TR