Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g16 ATGTTCCATGTTCAAGCTGCTTCAAGAAATCACTGTGCTCTCCTCGCAGTTGTGTGCGGCAAAATCCCTGTTTCTGAGGATCAACAACAGCATCCATATCCCTTCCCGGAACTTGTTTCTTCCGGCCGCCTTGAGGTTCAGATTCTGAAAAATCCTAGTATCCATGAGTTTCAACGGTCACTTGAATCGTTGGAGCCAAATTTCCTTTACTTGCAAGGGGAGCAGCTTCCGGGTAGTGAAGAAATAGGATCTCTGACATGGGGAGGGGTGGACTTGTCCTCTGCAGAGGCGTTAGTTGAACTCTTTGGTCCCACATTGCCCACAACTGTTTATCTAGAGACCCCAAATGGTGAAAAATTAGCAAAGGCACTTCATTCTAAGGGTGTTTCTTATGTAATATATTGGAAAAATGCATTTTCTTGCTATGCAGCTTGTCATTTTCGTCAAGCACTGTTCTCTGTGGTGCAAAGTTCATGCAGCCATACGTGGGATGCATTCCAGCTTGCCCATGCATCCTTTAGGCTCTATTGTGTGCAAAACAACACCGTACCTTCCAACAACCAGAAAGTTAGTGGTAAGCTTGGACCCTGCCTTCTTGGAGACCCTCCCAAGATTAATGTTGTTCCTCCTGAGGTTGACGAGGAGGAAAGCTTGCCTGCAACTCTTCCTGTTATAAAGATATATGATGCTGATGTGAGCATGAGGTTTCTTGTTTGTGGAGCACCAAGCGCATTGGATGCATGTTTACTGGGATCTTTGGAGGATGGCCTCAATGCCCTCCTGTGCATTGAAATTCGCGGGAGTAAACTTCATAATCGTGTGAGTGCTCCACCACCACCTCTTCAAGCAGGGACATTTTCTCGTGGCGTAGTGACCATGCGATGCGACTTATCAACCTGTAGTTCTGCCCATATATCACTTTTAGTGTCTGGTAGTGCCCAGACTTGTTTAAATGATCAGCTGTTGGAGAGTTATATCAAGAATGAGCTTATTGAGAAGAGTCAGTTAGTCCATGCAGTACCCAGCTGTGAGGAAAGCAAATTGTCTTCATCTGAGCCTCGGAGGTCTGCATCAATAGCTTGTGGGGCTAGTGTATTTGAAGTTCGTATAAAGGTTCCAACATGGGCTTCACAGGTTTTGAGGCAGCTAGCACCAGATGTATCTTATCGCAGCTTAGTCACCCTGGGAATAGCTAGCATTCAAGGTTTATCTGTTGCTTCCTTTGAAAAAGATGATGCTGACCGCCTCCTCTTCTTTTGTACAAGGCATGCCAAACAACTCAATCAAAACAATTCTATTCTTCCTAGGCCTCCTAGCTGGTTAATAGCTCCTCCAGCTAGTCGGAAAAGGTCTGGGCCATGCCATGAAACCAAACCATCTGGATATAAAGTCTTGGGAGGTGTAAATGGAGGTGTTCTTCAACAGAAACCAAAGATTGCTGCAATGAGGCCAATTCCCCACACTCGCAATCATAAAATGCTGCCTTTTTCTGGAATTTCTGAGGCCAGCAGGTGTGATGGAGACCAAGCAAAGGGTAACTTGTCAGTTGTTCCAGCAAAGCACAATGGCACCACACCTGTCACACATCGCAAATTGTTGTCAAGCTCTTTCCAGGCCCAGCAGATTATTTCTTTGAACCCTCTACCTCTAAAGAAGCATGGTTGTGGCAGATCACCAATTCAGATTTGCTCAGAAGAGGAATTTCTCAGGGATGTAATGCAATTTTTGATTCTCCGAGGGCATACCCGCCTTGTCCCTCAAGGGGGGCTGGCTGAATTCCCTGATGCTATACTTAATGCAAAACGCCTTGACCTTTACAACTTGTATAGAGAGGTGGTTTCAAGGGGAGGCTTCCATGTAGGGAATGGCATCAACTGGAAAGGACAAGTTTTCTCAAAGATGCGAAATCACACATTGACTAATAGAATGACAGGTGTTGGGAATACTCTAAAAAGACATTATGAAACCTATCTTTTAGAATATGAATTAGCCCATGATGATGTAGATGGGGAATGCTGCTTGTTGTGTCACAGTAGTGCAGCAGGTGACTGGGTGAATTGTGGAATATGTGGTGAATGGGCTCATTTTGGGTGTGATCGGCGCCAGGGTCTTGGTGCCTTCAAGGACTATGCAAAAACAGATGGGCTGGAATACATTTGTCCCCACTGCAGCATAACAAATTTCCAGAAGAAGTCCCAGAAAACTGCAAACGGATATTAG 2220 45.23 MFHVQAASRNHCALLAVVCGKIPVSEDQQQHPYPFPELVSSGRLEVQILKNPSIHEFQRSLESLEPNFLYLQGEQLPGSEEIGSLTWGGVDLSSAEALVELFGPTLPTTVYLETPNGEKLAKALHSKGVSYVIYWKNAFSCYAACHFRQALFSVVQSSCSHTWDAFQLAHASFRLYCVQNNTVPSNNQKVSGKLGPCLLGDPPKINVVPPEVDEEESLPATLPVIKIYDADVSMRFLVCGAPSALDACLLGSLEDGLNALLCIEIRGSKLHNRVSAPPPPLQAGTFSRGVVTMRCDLSTCSSAHISLLVSGSAQTCLNDQLLESYIKNELIEKSQLVHAVPSCEESKLSSSEPRRSASIACGASVFEVRIKVPTWASQVLRQLAPDVSYRSLVTLGIASIQGLSVASFEKDDADRLLFFCTRHAKQLNQNNSILPRPPSWLIAPPASRKRSGPCHETKPSGYKVLGGVNGGVLQQKPKIAAMRPIPHTRNHKMLPFSGISEASRCDGDQAKGNLSVVPAKHNGTTPVTHRKLLSSSFQAQQIISLNPLPLKKHGCGRSPIQICSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLYNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFQKKSQKTANGY* 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 385441 395146 + Vvi11g16 Vvi11g16 771457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g16 739 SMART ARID_2 559 662 - -
Vvi11g16 739 CDD PHD_ARID4_like 672 723 - -
Vvi11g16 739 CDD ARID 564 662 - -
Vvi11g16 739 Gene3D - 560 665 IPR036431 GO:0003677
Vvi11g16 739 SUPERFAMILY FYVE/PHD zinc finger 662 728 IPR011011 -
Vvi11g16 739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 728 IPR013083 -
Vvi11g16 739 SUPERFAMILY ARID-like 563 677 IPR036431 GO:0003677
Vvi11g16 739 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 1 739 IPR042293 -
Vvi11g16 739 ProSiteProfiles ARID domain profile. 562 666 IPR001606 GO:0003677
Vvi11g16 739 Pfam ARID/BRIGHT DNA binding domain 565 662 IPR001606 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g26 Vvi11g16 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13707 PF01388 ARID 7.70E-14 CL0123 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g16 - - vvi:100262830 1498.8