Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g17 | ATGTCTAGGTCATCTCGTCCTTTCACTGAGCTGGATCATGTTGGGTGCAATGGTAATGAGCCATCTGATTTTCAGAGATCAGTTGGAAATTTTCAAGCATTGCCTCCAATTCCACAGTTGTGGTCTCAACCATCTTACGGGGGTGGTTCCTCCTTGTCTCCTGTTATGGGAGAATACAAGATGCAGGGCTTTGGTCTGCAAGGAGAATATGTGGATAATGAAATGGATATCATGAGGAACAGATACGTTGGGGATGAAATTCTGCAACTTGATAACATTTCTTCAGCAATCCCCATAAAGGGGAAAGAAGAGCAGCACACTCATCCTTTCTCTCCTTCTGCGGTTGGGCCCCACATGACAATGACAGCATCTGGATTACAGTCTTTGCCACAGACTACGGTAGGTACTGCTTCTGGTGGCTGTAATGGAACTGGAAAGCCGCGTGTAAGGGCTCGTCGAGGCCAGGCCACTGATCCTCACAGTATTGCTGAAAGGCTTCGGAGAGAGAAAATTGCTGAAAGGATGAAGAACCTGCAAGAACTTGTTCCCAATTCCAATAAGACGGACAAAGCATCTATGCTCGACGAAATCATTGAGTACGTCAAATTTCTTCAGCTCCAGGTCAAGGTACTAAGCATGAGTAGGCTGGGGGCAGCAGAGGCAGTTGTTCCTCTCATCACAGATGGCCAAGCTGAGGGCTCTAAGGGTCTGTCACTTTCACCCTCGGCTGGTCAAGCTGAAGATATTTGTCAATCTCCTGATCAAATTGCCTTTGAGCAAGAAGTAGTGAAGTTGATGGAGTCCAACGTGACCATGGCCATGCAATATCTTCAAAGCAAAGGTCTCTGCCTTATGCCAATTGCTCTTGCTACAGCCATATCCAGTGGAAAGGCAGCATCATCAGGTACTGGGTCCGATGAGGGAAAGAACGGTTTGATTGGTGGATTCATTCCCAATAATAACAGTAGCAGCAACACCAGTAGCAGCAACACCAGTAGCAACAGCTTACCTGGCATTGGGACACATCATACATCTTCTGATGGCAATGTTCTGATTGGAAAACTCAGCAGAGAAGGCATCACCACCAGTAGTTGCAATGGGGCTATTAACAAACAAGAAGAGTTGAAGAGCACCTCATGCACTGCAAGAGAACTGAAAGCCAAAACTTAA | 1170 | 46.5 | MSRSSRPFTELDHVGCNGNEPSDFQRSVGNFQALPPIPQLWSQPSYGGGSSLSPVMGEYKMQGFGLQGEYVDNEMDIMRNRYVGDEILQLDNISSAIPIKGKEEQHTHPFSPSAVGPHMTMTASGLQSLPQTTVGTASGGCNGTGKPRVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIEYVKFLQLQVKVLSMSRLGAAEAVVPLITDGQAEGSKGLSLSPSAGQAEDICQSPDQIAFEQEVVKLMESNVTMAMQYLQSKGLCLMPIALATAISSGKAASSGTGSDEGKNGLIGGFIPNNNSSSNTSSSNTSSNSLPGIGTHHTSSDGNVLIGKLSREGITTSSCNGAINKQEELKSTSCTARELKAKT* | 390 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 396543 | 400278 | - | Vvi11g17 | Vvi11g17 | 771458 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g17 | 389 | Pfam | Helix-loop-helix DNA-binding domain | 160 | 205 | IPR011598 | GO:0046983 | |
Vvi11g17 | 389 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 153 | 216 | IPR036638 | GO:0046983 | |
Vvi11g17 | 389 | MobiDBLite | consensus disorder prediction | 315 | 348 | - | - | |
Vvi11g17 | 389 | MobiDBLite | consensus disorder prediction | 298 | 348 | - | - | |
Vvi11g17 | 389 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 134 | 296 | - | - | |
Vvi11g17 | 389 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Vvi11g17 | 389 | Gene3D | - | 152 | 222 | IPR036638 | GO:0046983 | |
Vvi11g17 | 389 | SMART | finulus | 161 | 210 | IPR011598 | GO:0046983 | |
Vvi11g17 | 389 | PANTHER | OS02G0564700 PROTEIN | 134 | 296 | - | - | |
Vvi11g17 | 389 | MobiDBLite | consensus disorder prediction | 137 | 159 | - | - | |
Vvi11g17 | 389 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 155 | 204 | IPR011598 | GO:0046983 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13711 | PF00010 | HLH | 5.40E-10 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g17 | - | - | vvi:100257707 | 746.117 |