Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g17 ATGTCTAGGTCATCTCGTCCTTTCACTGAGCTGGATCATGTTGGGTGCAATGGTAATGAGCCATCTGATTTTCAGAGATCAGTTGGAAATTTTCAAGCATTGCCTCCAATTCCACAGTTGTGGTCTCAACCATCTTACGGGGGTGGTTCCTCCTTGTCTCCTGTTATGGGAGAATACAAGATGCAGGGCTTTGGTCTGCAAGGAGAATATGTGGATAATGAAATGGATATCATGAGGAACAGATACGTTGGGGATGAAATTCTGCAACTTGATAACATTTCTTCAGCAATCCCCATAAAGGGGAAAGAAGAGCAGCACACTCATCCTTTCTCTCCTTCTGCGGTTGGGCCCCACATGACAATGACAGCATCTGGATTACAGTCTTTGCCACAGACTACGGTAGGTACTGCTTCTGGTGGCTGTAATGGAACTGGAAAGCCGCGTGTAAGGGCTCGTCGAGGCCAGGCCACTGATCCTCACAGTATTGCTGAAAGGCTTCGGAGAGAGAAAATTGCTGAAAGGATGAAGAACCTGCAAGAACTTGTTCCCAATTCCAATAAGACGGACAAAGCATCTATGCTCGACGAAATCATTGAGTACGTCAAATTTCTTCAGCTCCAGGTCAAGGTACTAAGCATGAGTAGGCTGGGGGCAGCAGAGGCAGTTGTTCCTCTCATCACAGATGGCCAAGCTGAGGGCTCTAAGGGTCTGTCACTTTCACCCTCGGCTGGTCAAGCTGAAGATATTTGTCAATCTCCTGATCAAATTGCCTTTGAGCAAGAAGTAGTGAAGTTGATGGAGTCCAACGTGACCATGGCCATGCAATATCTTCAAAGCAAAGGTCTCTGCCTTATGCCAATTGCTCTTGCTACAGCCATATCCAGTGGAAAGGCAGCATCATCAGGTACTGGGTCCGATGAGGGAAAGAACGGTTTGATTGGTGGATTCATTCCCAATAATAACAGTAGCAGCAACACCAGTAGCAGCAACACCAGTAGCAACAGCTTACCTGGCATTGGGACACATCATACATCTTCTGATGGCAATGTTCTGATTGGAAAACTCAGCAGAGAAGGCATCACCACCAGTAGTTGCAATGGGGCTATTAACAAACAAGAAGAGTTGAAGAGCACCTCATGCACTGCAAGAGAACTGAAAGCCAAAACTTAA 1170 46.5 MSRSSRPFTELDHVGCNGNEPSDFQRSVGNFQALPPIPQLWSQPSYGGGSSLSPVMGEYKMQGFGLQGEYVDNEMDIMRNRYVGDEILQLDNISSAIPIKGKEEQHTHPFSPSAVGPHMTMTASGLQSLPQTTVGTASGGCNGTGKPRVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIEYVKFLQLQVKVLSMSRLGAAEAVVPLITDGQAEGSKGLSLSPSAGQAEDICQSPDQIAFEQEVVKLMESNVTMAMQYLQSKGLCLMPIALATAISSGKAASSGTGSDEGKNGLIGGFIPNNNSSSNTSSSNTSSNSLPGIGTHHTSSDGNVLIGKLSREGITTSSCNGAINKQEELKSTSCTARELKAKT* 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 396543 400278 - Vvi11g17 Vvi11g17 771458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g17 389 Pfam Helix-loop-helix DNA-binding domain 160 205 IPR011598 GO:0046983
Vvi11g17 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 216 IPR036638 GO:0046983
Vvi11g17 389 MobiDBLite consensus disorder prediction 315 348 - -
Vvi11g17 389 MobiDBLite consensus disorder prediction 298 348 - -
Vvi11g17 389 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 134 296 - -
Vvi11g17 389 MobiDBLite consensus disorder prediction 1 21 - -
Vvi11g17 389 Gene3D - 152 222 IPR036638 GO:0046983
Vvi11g17 389 SMART finulus 161 210 IPR011598 GO:0046983
Vvi11g17 389 PANTHER OS02G0564700 PROTEIN 134 296 - -
Vvi11g17 389 MobiDBLite consensus disorder prediction 137 159 - -
Vvi11g17 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13711 PF00010 HLH 5.40E-10 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g17 - - vvi:100257707 746.117