Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g177 ATGCCACTGAGATGCAAAATTACGATCTGTGATCCACCCATTTGGGCGGGTCCAAGATTATATCAAATCCTGGATACCCACATCCTGATATGGAGGCTAGTGAAGCTCTGTGCCATTGCCTCTTGCTTGTTTATTCAAGGATCTACAGGGTACAATATATCTCCAACTCCATCAACTTTTCCTCCAATTTCTTCCATAGAAGGACGACCTGGTGTTGTCCACCGAGGAAAGTCATTGAGAAGCAATGCACCAAGTCCATCACTTCAGATAAATGGGCCTGCTTTGCACCCTCCACTTGTATTGCCACCCATTAAATCTGCTCCAGCACCTGAAATGACCAAAGGCTATGTGCCATCAATGCCACCAAGTAATCCAAGAATGTCACCACCACATTATAAAACTCCTCCACACTTAAAGGTTCCAATAACTCTACCATCCGTCCCACCAAGTGCTTCTCAAAGGAAGGCACCTGATAATAAGGCTCCTGTTTGGGCTCCAGTTGCTCCAATTGCTCCAGTTGCTCCAGTACCAGATGGACCACCTCAGAGGAAATGGCCACAAAATCCTCCATCCATGCACCCACACCCAGTGATGCCTGGATTACTGCCACCAAGTGCTCACAATAGGAACAAGCCAGATAATAAGGCTCCAATCTCAACGCCAATTGCCCCAGATCCTGATGTCACTCCAATATCAACTCCTCCCCTAGCAAGTCACTGGAGAAGAAAACAAATGCCGGTTGCTGCACCTCCAAACAGAACACCTGACCCACTGTCACCAGTGAACCATTCCCCGGCTAAAGCACCTTCTATACACAATGCCATGAGGCATAGTAATGCACCTGCTTCTCTTTCAACTCCACAATCTCCTACAAATAAAGGGTCCCAGTCTCCTGCATCTTCACCGTCAATGTCATTTTCTAAGCATCATCGTGGAAGGAACAAAATCACCGGCCCTGCTCCTGCATCATCATATCTCATTCCTCCACCCTCACCAAGGCATCAAGGTCCAGTCATCTCTCCAGCTCCTTCACATCCTCCTAAATCACTTCCAAATAGAACACGAACGCACCACGCTCCTCTGCCACTAAATCCTGGTTCTAGAATCTCTCCAGCCCATTCTCCCTCTCCTTCATCATTGACCTATCCTTCACCTGCACCTTCACCATCTCCAACAGCTCGATCTGGCCAGACTATGATTCCCTTTCTTTCCCCTAAAATTTCTCCTTCTCGGCTACCCCCAAGTTCAAAGATGCCAGCCCCGCCACCAGTTCAAGCGTTACCACCCCCACCTCCTAATCAAGATTGTTCAGCAATTGTCTGCACAGAGCCAAATACAAATACTCCTCCTGGGTCACCATGTGGCTGTGTCTTGCCAATGCAAGTTCAGTTGCGCCTTAATGTTGCACTGTATACCTTCTTCCCTTTGGTTTCAGAGCTGGCTGAGGAGATTGCTGCTGGGGTTTTTATGAGACAAAGTCAAGTTCGCATAATGGGAGCCAATGCAGCTAGCCCGGAAGCAGAAAAGACAATTGTCCTCATTGACTTGGTCCCTCTTGGGGAAAAATTTGATAATACTACAGCTTTTTTAACCTATCAGAGATTCTGGGGCAAGCAGGTTGTCATAAAAAATTTGTTTTTTGGTGATTATGAAGTAATATATGTGAACTATCCAGGCCTACCCCCTTCTCCACCTTCAGCGCCTTCAAGCATTACTATGATAGATAATGGACCATATTCTGGTCAAGGCAATAATGGGAGGACAATACACCCGCTAGGGGTCGATGTGCACAAGAACCGACATAAACATGGGCTTAGTGGCAGTGTAATTGCTATTATAGTTTTGTCAGCCTCTGTTGCTGTGGTTTTATGTTCTGCTGTTGCTTGGGTTTTTCTGTTCAAAAAAACAGATTGTATTGGCCAACCAGTGCCAACTCAAGCAGCTTTGGTGCCTTCACTTGCAAGACCACCAGGTGCTGCTGGATCTGTGGTTGGAAGTGCGCCCAGCTCAGCTTCATTATCATTTGGATCTAGCATTGCAACTTATACAGGATCTGCCAAGACTTTCAGCGCAGCTGACATAGAGAGAGCCACTGATAATTTTGATGATTCAAGAATACTTGGGGAAGGTGGCTTTGGGCGTGTTTATAGTGGGGTTCTTGAAGATGGAACAAAAGTGGCTGTTAAGGTTCTTAAACGAGATGATCATCAGGGAGGTCGGGAATTTTTGGCTGAAGTTGAGATGCTTAGTCGTCTTCATCATAGAAATTTGGTCAAGTTAATTGGTATATGTACAGAGGAGCGTACCCGCTGCTTAGTGTATGAACTCATTCCAAATGGCAGTGTGGAGTCCCATTTACATGGAGCTGACAAGGAAACTGCTCCACTTGATTGGGGTGCCCGGATAAAGGTGGCGCTTGGTGCTGCTCGTGGTCTGGCCTATCTGCATGAAGATTCAAGCCCCCGTGTCATACACAGGGACTTCAAGTCCAGCAACATCTTATTGGAACATGATTTTACACCAAAAGTGTCCGACTTTGGTTTGGCTCGCACAGCCATGGATGAGGAAAACAGACACATCTCAACACGTGTCATGGGAACTTTTGGGTATGTGGCTCCAGAGTATGCAATGACTGGCCATCTTCTTGAAAATCTAGTTGCTTGGGCCCGTCCTCTCCTCACAAGTAAAGAAGGGTTACAAACAATGATAGACCTATCTCTAGGATCTGATGTTCCTTTTGACAGTGTGGCCAAAGTAGCTGCTATCGCTTCAATGTGTGTTCAACCAGAGGTGTCACACCGTCCTTTTATGGGTGAGGTTGTTCAAGCCTTGAAGCTAGTTTGCAATGAGTGTGATGAGACAAAAGAAGCAGGGCAGTTGCCTGATCCTTCACATGCCCATTTCCCAGTTTCTACGTATGGTTCTGGCCTTGATGCTGAAACTGGACTCTCAGTATCAGAATTATTCAGCACATCAGCAAGATTTGGGAGGCAGCCATCCGGGTCATTTAGGAGGTACTCTAGCTCAGGTCCTCTGAGAACAGGAAGGGCTAGGCACTTCTGGCAGAGGATGAGAAGAAATTCTGGCGGCAGTGTGAGTGAGCATGGAATTATGTTCAGATTACGGCCAGGTTCCCATTGA 3141 46.74 MPLRCKITICDPPIWAGPRLYQILDTHILIWRLVKLCAIASCLFIQGSTGYNISPTPSTFPPISSIEGRPGVVHRGKSLRSNAPSPSLQINGPALHPPLVLPPIKSAPAPEMTKGYVPSMPPSNPRMSPPHYKTPPHLKVPITLPSVPPSASQRKAPDNKAPVWAPVAPIAPVAPVPDGPPQRKWPQNPPSMHPHPVMPGLLPPSAHNRNKPDNKAPISTPIAPDPDVTPISTPPLASHWRRKQMPVAAPPNRTPDPLSPVNHSPAKAPSIHNAMRHSNAPASLSTPQSPTNKGSQSPASSPSMSFSKHHRGRNKITGPAPASSYLIPPPSPRHQGPVISPAPSHPPKSLPNRTRTHHAPLPLNPGSRISPAHSPSPSSLTYPSPAPSPSPTARSGQTMIPFLSPKISPSRLPPSSKMPAPPPVQALPPPPPNQDCSAIVCTEPNTNTPPGSPCGCVLPMQVQLRLNVALYTFFPLVSELAEEIAAGVFMRQSQVRIMGANAASPEAEKTIVLIDLVPLGEKFDNTTAFLTYQRFWGKQVVIKNLFFGDYEVIYVNYPGLPPSPPSAPSSITMIDNGPYSGQGNNGRTIHPLGVDVHKNRHKHGLSGSVIAIIVLSASVAVVLCSAVAWVFLFKKTDCIGQPVPTQAALVPSLARPPGAAGSVVGSAPSSASLSFGSSIATYTGSAKTFSAADIERATDNFDDSRILGEGGFGRVYSGVLEDGTKVAVKVLKRDDHQGGREFLAEVEMLSRLHHRNLVKLIGICTEERTRCLVYELIPNGSVESHLHGADKETAPLDWGARIKVALGAARGLAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARTAMDEENRHISTRVMGTFGYVAPEYAMTGHLLENLVAWARPLLTSKEGLQTMIDLSLGSDVPFDSVAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNECDETKEAGQLPDPSHAHFPVSTYGSGLDAETGLSVSELFSTSARFGRQPSGSFRRYSSSGPLRTGRARHFWQRMRRNSGGSVSEHGIMFRLRPGSH* 1047
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1758085 1767553 + Vvi11g177 Vvi11g177 771618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g177 1046 MobiDBLite consensus disorder prediction 173 433 - -
Vvi11g177 1046 ProSitePatterns Protein kinases ATP-binding region signature. 707 729 IPR017441 GO:0005524
Vvi11g177 1046 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672|GO:0006468
Vvi11g177 1046 MobiDBLite consensus disorder prediction 122 136 - -
Vvi11g177 1046 MobiDBLite consensus disorder prediction 276 307 - -
Vvi11g177 1046 Gene3D Transferase(Phosphotransferase) domain 1 777 952 - -
Vvi11g177 1046 SUPERFAMILY Protein kinase-like (PK-like) 680 944 IPR011009 -
Vvi11g177 1046 PANTHER OS01G0750732 PROTEIN 883 1046 - -
Vvi11g177 1046 PANTHER OS01G0750732 PROTEIN 29 882 - -
Vvi11g177 1046 MobiDBLite consensus disorder prediction 323 348 - -
Vvi11g177 1046 Pfam Protein tyrosine and serine/threonine kinase 705 880 IPR001245 GO:0004672|GO:0006468
Vvi11g177 1046 MobiDBLite consensus disorder prediction 122 160 - -
Vvi11g177 1046 MobiDBLite consensus disorder prediction 412 433 - -
Vvi11g177 1046 MobiDBLite consensus disorder prediction 173 201 - -
Vvi11g177 1046 Gene3D Phosphorylase Kinase; domain 1 676 776 - -
Vvi11g177 1046 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 29 882 - -
Vvi11g177 1046 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 883 1046 - -
Vvi11g177 1046 ProSiteProfiles Protein kinase domain profile. 701 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g175 Vvi11g177 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76039 PF07714 PK_Tyr_Ser-Thr 5.90E-37 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g177 - - vvi:100254143 1862.43