Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g203 ATGAAAAGTTTAGTAGCTTCATTAGATTTAAGAGAGAAGAAGCTTGGTGTTTCTGTGATGGGTTTGAATTTCCTTGGTGGGATGAACCTGCAACAGAAGCACGGTGGTGGTGGGGGGAAGAAGAACTGCTCAGATGTGGCTGATAAAGTTGTTGTTGTTGTTGCTGTTAAGGCTTCAAGGGAAATCCCAAGAAGGGCTCTTGTGTGGGCTTTGACTCATGTTGTTCAGCCTGGGGATTGCATTATGCTTCTGGTGGTCATCCCTCCTCACAGCCATGGTAAAAAACTATGGGGTTTTCCAAGATTTAGTAGTGATTGTACAACTGGTCAGAGGAAGTTTCATTCAGGAACCAGCTCAGATCAGAAGGATGATATTACAGATACATGCTCCCAAATGATGCTTCAACTCCATGATGTTTACGACCCTGATATGATAAATGTGAAGATAAAAATTGTTTCTGGCTCACGATCTGGAGTAGTGGCAGCTGAAGCCAAGAGTGTTCAAACAAACTGGATTGTCTTGGATAAACGGCTGAAGCATGAAGCAAAGCACTGCATGGAAGAGCTGCAATGCAACCTAGTGGTTATGAAACGATCTCGACCAAAGGTTCTTCGTTTGAATTTGACTGGATCATCAAAGAAGGAACCTGAAGTGGCTTGCCCATTACAGTCAATATCAGAAGCATCTGAAGGACATCTAAAAAATAAGCATGATGACATGCCAAATGCGATCCGAGGTCCTGTTGTCACTCCAGCAAGTAGTCCAGAACATGGGACAACATTCACTTCGACTGACATTGGAACTTCATCAATGTCAAGCTCAGATCCAGGGAATTCACCTTTTTTCATTCCCAGAATTAGCAGGGACCTGAAGATGGAGGATGCATTAACCACTGAAGGTAACCCACTTTTGGATGAATCTGACTCTGATACAGACACTCTAGCTTTCAAATCTGGTATGTTGCTGGACAAGTTCTCCCAACTTGATCCAGAACCTGAAGTTGGAGTGCTGAACTATAAGTTTGACCTGGAGTCAGGTATAAATGTGAGAGAAGTAATTTCATTATCTGGAAATACACCTCCTGGACCTCCTCCACTGTGTTCAATTTGTCAGCATAAGGCGCCTGTATTTGGAAAACCTCCAAGGTGGTTCACCTATGCTGAGCTAGAACTTGCTACAGGTGGATTTTCACATGTTAATTTCTTGGCAGAAGGTGGATTTGGTTCTGTGCATAGAGGGATCTTACCAGATGGTCAGGTTGTTGCTGTTAAGCAACATAAATTGGCTAGTTCTCAGGGTGATCTCGAATTTTGCTCAGAAGTGGAGGTCCTAAGCTGTGCACAGCATCGCAATGTTGTGATGCTAATCGGGTTCTGTGTGGAGGATGGAAGAAGGTTGCTGGTTTATGAATATATCTGCAATGGGTCTTTGGATTCCCATCTTTATGGACGTGATCGAGGTCTGCTAGAATGGTCTGCACGACAAAAAATTGCAGTTGGAGCTGCTCGAGGATTGAGATATCTTCATGAAGAATGCAGAGTGGGTTGTATTGTCCACCGCGATATGCGGCCTAACAATATCCTCATCACGCATGATTTTGAACCATTAGTTGGAGATTTTGGACTGGCAAGGTGGCAGCCAGATGGAGACATGGGAGTGGAAACACGAATAATTGGAACATTTGGGTACCTGTCTCCAGAATATGCTCAAAGTGGCCAAATCACAGAAAAAGCTGATGTATACTCCTTTGGAGTAGTGTTGGTGGAGCTCATTACAGGACGGAAAGCTATGGATATAAACCGGCCAAAGGGTCAGCAGTGCCTCACTGAATGGGCACGCCCTTTGCTAGAACAATGTGCCATTGATGAACTGGTTGACCCACGCCTAAGGAACTGCTATTCGGAGAAAGAAGTTTCTGGCATGCTGCATTGTGCCTCCTTGTGCATCCAACGGGATCCTCATTCTAGGCCCCGCATGTCTCAGGTGCTTCGAATATTAGAGGGTGATATTTTCATGAACTCGACTGGTTATATGTCAAAAAACTTGGCCTATGATGTGGGGAACAGCAGGGAAGGGATGTGGCCAGAACAGCTGCAACAGCATCAACGATACAGTGGCCCAATCTCAAATGGAGCAGCCCAAAGAGCTCGAAGATCAGCTCACTGGGAGCGAAGAAGTGTAGACGGCTTCATGTGA 2196 44.95 MKSLVASLDLREKKLGVSVMGLNFLGGMNLQQKHGGGGGKKNCSDVADKVVVVVAVKASREIPRRALVWALTHVVQPGDCIMLLVVIPPHSHGKKLWGFPRFSSDCTTGQRKFHSGTSSDQKDDITDTCSQMMLQLHDVYDPDMINVKIKIVSGSRSGVVAAEAKSVQTNWIVLDKRLKHEAKHCMEELQCNLVVMKRSRPKVLRLNLTGSSKKEPEVACPLQSISEASEGHLKNKHDDMPNAIRGPVVTPASSPEHGTTFTSTDIGTSSMSSSDPGNSPFFIPRISRDLKMEDALTTEGNPLLDESDSDTDTLAFKSGMLLDKFSQLDPEPEVGVLNYKFDLESGINVREVISLSGNTPPGPPPLCSICQHKAPVFGKPPRWFTYAELELATGGFSHVNFLAEGGFGSVHRGILPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRGLLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDMGVETRIIGTFGYLSPEYAQSGQITEKADVYSFGVVLVELITGRKAMDINRPKGQQCLTEWARPLLEQCAIDELVDPRLRNCYSEKEVSGMLHCASLCIQRDPHSRPRMSQVLRILEGDIFMNSTGYMSKNLAYDVGNSREGMWPEQLQQHQRYSGPISNGAAQRARRSAHWERRSVDGFM* 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1960914 1966799 - Vvi11g203 Vvi11g203 771644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g203 731 Pfam Protein tyrosine and serine/threonine kinase 401 665 IPR001245 GO:0004672|GO:0006468
Vvi11g203 731 ProSiteProfiles Protein kinase domain profile. 396 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g203 731 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 309 688 - -
Vvi11g203 731 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 47 284 - -
Vvi11g203 731 MobiDBLite consensus disorder prediction 253 280 - -
Vvi11g203 731 ProSitePatterns Tyrosine protein kinases specific active-site signature. 517 529 IPR008266 GO:0004672|GO:0006468
Vvi11g203 731 Gene3D Transferase(Phosphotransferase) domain 1 472 681 - -
Vvi11g203 731 Gene3D Phosphorylase Kinase; domain 1 368 471 - -
Vvi11g203 731 Gene3D HUPs 46 214 IPR014729 -
Vvi11g203 731 PANTHER OS01G0253100 PROTEIN 309 688 IPR045271 GO:0004714|GO:0006468
Vvi11g203 731 PANTHER OS01G0253100 PROTEIN 47 284 IPR045271 GO:0004714|GO:0006468
Vvi11g203 731 MobiDBLite consensus disorder prediction 247 280 - -
Vvi11g203 731 CDD STKc_IRAK 402 668 - -
Vvi11g203 731 SUPERFAMILY Protein kinase-like (PK-like) 380 670 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g193 Vvi11g203 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76040 PF07714 PK_Tyr_Ser-Thr 1.40E-40 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g203 - - vvi:100242363 1390.17