Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g23 ATGGGAATTCCCAAACAGCAGCCGCAGCAGCAGTACACGGTGGAGCAACTACTCGCTCTCAATCCCTACAATCCCGATATCCTTCCCGATCTTGAAAACTTCGTCAACGAGCAGGTGTCTTCACAAACATACTCCTTGGATGCAAATCTTTGCCTTCTTCGCCTCTACCAATTTGAGCCAGAGCGAATGAGTACCCAAATCGTTGCTCGGATTTTGGTGAAGGCCCTTATGGCAATGCCAGCTCCAGATTTCAGCCTTTGTCTCTTTTTAATTCCAGAACGAGTGCAAATGGAGGAACAGTTCAAGACTTTGATTGTTCTCTCACATTATTTGGAGACAGCAAGGTTCCGTCAGTTCTGGGATGAAGCGGCTAAGAATCGACACATAGTTGAAGTTGTTCCAGGTTTTGAGCAAGCAATCCAAGCCTATGCCATTCACGTTCTTTCCTTGACTTATCAAAAGGTTCCTAGGACTGTACTTGCTGAGGCTATCAACATTGAAGGTCTATCTCTAGATAAATTCCTAGAGCATCAGGTAGCTAACTGTGGTTGGGTTCTTGAGAAGAGTCAAGGCAAGGGCCAACTTATTGTCTTGCCTCCTAACGAGTTCAACCATCCTGAACTGAAGAAAAACGCTGCAGATAGTATTCCTCTAGAGCATATCACCCGAATCTTCCCCATTCTCGGCTGA 690 45.65 MGIPKQQPQQQYTVEQLLALNPYNPDILPDLENFVNEQVSSQTYSLDANLCLLRLYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETARFRQFWDEAAKNRHIVEVVPGFEQAIQAYAIHVLSLTYQKVPRTVLAEAINIEGLSLDKFLEHQVANCGWVLEKSQGKGQLIVLPPNEFNHPELKKNAADSIPLEHITRIFPILG* 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 443151 447398 - Vvi11g23 Vvi11g23 771464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g23 229 Gene3D - 125 227 IPR036388 -
Vvi11g23 229 ProSiteProfiles PCI domain profile. 44 202 IPR000717 -
Vvi11g23 229 Gene3D ARM repeat; domain 1 5 122 IPR016020 GO:0003743|GO:0005852|GO:0006446|GO:0043022
Vvi11g23 229 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT K 4 229 - -
Vvi11g23 229 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 4 229 IPR009374 GO:0003743|GO:0005737|GO:0005852
Vvi11g23 229 SUPERFAMILY ARM repeat 7 132 IPR016024 -
Vvi11g23 229 Hamap Eukaryotic translation initiation factor 3 subunit K [EIF3K]. 5 229 IPR009374 GO:0003743|GO:0005737|GO:0005852
Vvi11g23 229 Pfam CSN8/PSMD8/EIF3K family 64 190 IPR033464 -
Vvi11g23 229 SUPERFAMILY Winged helix DNA-binding domain 134 226 IPR036390 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g23 K15028 - vvi:100259495 459.144