Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g238 ATGATGATCGGAGAATCGCGCCATCCAAATCCGACGGTCCTGGTTCCTCCTTGGCCCCACTTTGACGATCCTACGGTTGATATATCTTTCCCGTATCCGGTAAGTGGTGTCTCCGCGTTGACAGCGCTGCAACGTTATCTCCCGTCCAATGACGTTGATGTGGATTCGGACTCCGATATTTCCGGTCGTGAGGCCGACATTCCGGTGGACGCATACTCGTGCGATCATTTTCGGATGTTTGAGTTCAAGGTGAGGAGGTGCGCACGTGGGCGGTCGCATGACTGGACTGAGTGTCCGTACGCTCATCCAGGCGAGAAGGCTCGCCGCAGGGATCCTAGGAAATTTCACTATTCCGGCACGGCGTGTCCTGACTTCAGGAAGGGGAACTGCAAGAAGGGTGATTCGTGTGAGTTCGCGCATGGCGTATTTGAGTGTTGGCTCCACCCGGCTCGCTATCGCACCCAGCCATGTAAGGACGGGCCCAACTGTCGCCGGCGGGTTTGCTTCTTTGCTCACACGGCTGAGCAGCTGAGGGTTTTGCCTCAGCAGAGTCCGAGGACGCCTGGGTCGGTGGAGTCCTATGACGGGTCGCCGCTTAGGCAAGCGTTGGAAGCTTCCTGTGCAAAAACTCTGCCGTTTATGTCATCTCCAGGTCTGAGCCGTTCACTGGGCTCGAACTCCATCAACGAAATGGTTGCGTCTCTACGACAACTCCAACTCAGCAAGGTGAAGTCAGCACCATCCTCATGGTGCGTTCATATGGGTTCTCCAGCCCCGAAACGGCACGGCCTCGGGTTCGTGGACCTCTTCGAAGAAGAGCCAGCCATGGAGAGGGTGGAGTCAGGCAGAGACTTGCGAGCCAAGATGTTCGAAAAGTTGAGCAAGGAAAACTCTTTGGATCGACCCGACCCTTCAGCCTCAGGTGCTGGTCCAGATGTTGGGTGGGTGTCAGAGCTGGTAAAATTAATGAAAATCCCCATTTCCCAACTCCCAACAAGGATGCCTCGCCGGTATTTTACTTGTGGCGGATTTTTGGTAGTCTGCTTTATCCACATAAAGCTCAAAATCTTGCCCATTTATGAGCAAATATGGTAA 1095 54.25 MMIGESRHPNPTVLVPPWPHFDDPTVDISFPYPVSGVSALTALQRYLPSNDVDVDSDSDISGREADIPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGPNCRRRVCFFAHTAEQLRVLPQQSPRTPGSVESYDGSPLRQALEASCAKTLPFMSSPGLSRSLGSNSINEMVASLRQLQLSKVKSAPSSWCVHMGSPAPKRHGLGFVDLFEEEPAMERVESGRDLRAKMFEKLSKENSLDRPDPSASGAGPDVGWVSELVKLMKIPISQLPTRMPRRYFTCGGFLVVCFIHIKLKILPIYEQIW* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2199316 2201202 - Vvi11g238 Vvi11g238 771679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g238 364 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 321 - -
Vvi11g238 364 ProSiteProfiles Zinc finger C3H1-type profile. 117 143 IPR000571 GO:0046872
Vvi11g238 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 121 141 IPR000571 GO:0046872
Vvi11g238 364 PANTHER UNKEMPT FAMILY MEMBER 7 321 IPR045234 -
Vvi11g238 364 SMART c3hfinal6 116 142 IPR000571 GO:0046872
Vvi11g238 364 SMART c3hfinal6 151 174 IPR000571 GO:0046872
Vvi11g238 364 Gene3D - 117 180 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g43 Vvi11g238 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13719 PF00642 zf-CCCH 2.60E-06 CL0537 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g238 - - vvi:100259323 626.32