Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g254 ATGAAGAGCAAGAAGCCACTGAAGCAACTGAAGCTCTCTGTTCCTGCTCAAGAAACCCCTATCACCAGTTTCTTGACTGCAAGTGGCACATTTCAGGATGGTGATCTGCTCTTAAACCAGAAGGGTTTGCGGCTTATCTCTGAGGAGAAAGAACCTCGTCCTTCAGAGGCTAAGGAGCTTGATGTACAATTTTCATTGGAAGATCTTGAGACCATCAAAGTCATTGGAAAGGGAAGTGGAGGTGTTGTTCAACTTGTTCGCCACAAATGGGTTGGAACATTATTTGCCTTGAAGGTCATCCAGATGAATATACAAGAGAATTTCCGCAAACAAATTGTGCAGGAGCTGAAGATAAATCAAGCATCACAATGTTCACATATTGTTGTTTGCTACCATTCGTTCTATCACAATGGAGTCATCTCTCTTGTCCTGGAATACATGGATCGTGGATCTTTGGTTGATGTGATCAGACAGGTCAAAACAATCCTTGAACCATATCTTGCTGTTCTTTGTAAGCAGGTTTTACAAGGTCTTGTGTACTTGCACCATGAAAGACACGTAATTCATAGGGACATAAAACCATCCAACCTGCTGGTAAACCACAAAGGGGAAGTAAAGATTACAGATTTTGGTGTGAGTGCTATGCTAGGTAGCTCTATGGGTCAGAGGGACACGTTTGTTGGGACTTACAATTACATGTCGCCTGAGAGAATTAAAGGAAGCACTTATGACTACAGCAGTGATATTTGGAGTCTGGGCATGGTAGCACTTGAATGTGCTATTGGACATTTTCCTTATATGCAATCTGAAGACCAGCAAAGCGGGCCAAGCTTTTATGAGCTCTTAGAGGCAATTGTGGAAAGCCCACCACCATCTGCTCCCCCAGATCAATTCTCTCCAGAATTTTGTTCTTTTATATCTGCCTGCATACAGAAGAACCCTCAAGACCGATTGTCATCATTAGACCTCGTGAGTCACCCTTTCATCAAAAAGTTTGAAGACAAGGACATTGATCTCGAAATTCTGGTAGGCAGCTTGGAACCTCCTGTAAATTTCCCAAGATAG 1065 42.72 MKSKKPLKQLKLSVPAQETPITSFLTASGTFQDGDLLLNQKGLRLISEEKEPRPSEAKELDVQFSLEDLETIKVIGKGSGGVVQLVRHKWVGTLFALKVIQMNIQENFRKQIVQELKINQASQCSHIVVCYHSFYHNGVISLVLEYMDRGSLVDVIRQVKTILEPYLAVLCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLGSSMGQRDTFVGTYNYMSPERIKGSTYDYSSDIWSLGMVALECAIGHFPYMQSEDQQSGPSFYELLEAIVESPPPSAPPDQFSPEFCSFISACIQKNPQDRLSSLDLVSHPFIKKFEDKDIDLEILVGSLEPPVNFPR* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2377697 2381398 + Vvi11g254 Vvi11g254 771695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g254 354 SUPERFAMILY Protein kinase-like (PK-like) 67 345 IPR011009 -
Vvi11g254 354 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g254 354 SMART serkin_6 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g254 354 Gene3D Phosphorylase Kinase; domain 1 39 148 - -
Vvi11g254 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Vvi11g254 354 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 353 - -
Vvi11g254 354 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Vvi11g254 354 Gene3D Transferase(Phosphotransferase) domain 1 150 346 - -
Vvi11g254 354 CDD PKc_MAPKK_plant_like 67 333 - -
Vvi11g254 354 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g254 354 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 353 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76041 PF00069 Pkinase 1.70E-65 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g254 K04368 - vvi:100252603 690.649