Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g254 ATGAAGAGCAAGAAGCCACTGAAGCAACTGAAGCTCTCTGTTCCTGCTCAAGAAACCCCTATCACCAGTTTCTTGACTGCAAGTGGCACATTTCAGGATGGTGATCTGCTCTTAAACCAGAAGGGTTTGCGGCTTATCTCTGAGGAGAAAGAACCTCGTCCTTCAGAGGCTAAGGAGCTTGATGTACAATTTTCATTGGAAGATCTTGAGACCATCAAAGTCATTGGAAAGGGAAGTGGAGGTGTTGTTCAACTTGTTCGCCACAAATGGGTTGGAACATTATTTGCCTTGAAGGTCATCCAGATGAATATACAAGAGAATTTCCGCAAACAAATTGTGCAGGAGCTGAAGATAAATCAAGCATCACAATGTTCACATATTGTTGTTTGCTACCATTCGTTCTATCACAATGGAGTCATCTCTCTTGTCCTGGAATACATGGATCGTGGATCTTTGGTTGATGTGATCAGACAGGTCAAAACAATCCTTGAACCATATCTTGCTGTTCTTTGTAAGCAGGTTTTACAAGGTCTTGTGTACTTGCACCATGAAAGACACGTAATTCATAGGGACATAAAACCATCCAACCTGCTGGTAAACCACAAAGGGGAAGTAAAGATTACAGATTTTGGTGTGAGTGCTATGCTAGGTAGCTCTATGGGTCAGAGGGACACGTTTGTTGGGACTTACAATTACATGTCGCCTGAGAGAATTAAAGGAAGCACTTATGACTACAGCAGTGATATTTGGAGTCTGGGCATGGTAGCACTTGAATGTGCTATTGGACATTTTCCTTATATGCAATCTGAAGACCAGCAAAGCGGGCCAAGCTTTTATGAGCTCTTAGAGGCAATTGTGGAAAGCCCACCACCATCTGCTCCCCCAGATCAATTCTCTCCAGAATTTTGTTCTTTTATATCTGCCTGCATACAGAAGAACCCTCAAGACCGATTGTCATCATTAGACCTCGTGAGTCACCCTTTCATCAAAAAGTTTGAAGACAAGGACATTGATCTCGAAATTCTGGTAGGCAGCTTGGAACCTCCTGTAAATTTCCCAAGATAG 1065 42.72 MKSKKPLKQLKLSVPAQETPITSFLTASGTFQDGDLLLNQKGLRLISEEKEPRPSEAKELDVQFSLEDLETIKVIGKGSGGVVQLVRHKWVGTLFALKVIQMNIQENFRKQIVQELKINQASQCSHIVVCYHSFYHNGVISLVLEYMDRGSLVDVIRQVKTILEPYLAVLCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLGSSMGQRDTFVGTYNYMSPERIKGSTYDYSSDIWSLGMVALECAIGHFPYMQSEDQQSGPSFYELLEAIVESPPPSAPPDQFSPEFCSFISACIQKNPQDRLSSLDLVSHPFIKKFEDKDIDLEILVGSLEPPVNFPR* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2377697 2381398 + Vvi11g254 Vvi11g254 771695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g254 354 SUPERFAMILY Protein kinase-like (PK-like) 67 345 IPR011009 -
Vvi11g254 354 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g254 354 SMART serkin_6 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g254 354 Gene3D Phosphorylase Kinase; domain 1 39 148 - -
Vvi11g254 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Vvi11g254 354 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 353 - -
Vvi11g254 354 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Vvi11g254 354 Gene3D Transferase(Phosphotransferase) domain 1 150 346 - -
Vvi11g254 354 CDD PKc_MAPKK_plant_like 67 333 - -
Vvi11g254 354 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g254 354 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g254 K04368 MAP2K1, MEK1; mitogen-activated protein kinase kinase 1 [EC:2.7.12.2] - vvi:100252603 690.649
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g254 Blo01g00529 . Bda01g02038 . . Bpe02g02226 . . . . Cma05g01373 Cma12g01275 Car05g01287 Car12g01246 . . . . . . . . . . Cla11g00183 Cam11g0213 Cec11g0214 . . . . . . . . . Csa02g00082 Chy05g01408 . . . . . . . Bma01g00211 . Sed08g1406 Cmo05g01376 . . . . . Cpe11g01143 . Bhi06g01689 Tan08g0109 Cmetu04g3241 . . . . . . . . . . . Lsi11g00218 . . Cme05g02012
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi11g140 . 27 352 MAP Kinase Kinase Gene Family AT4G26070 69.9 2.1e-134 475.7
Vvi11g254 . 26 350 MAP Kinase Kinase Gene Family AT4G26070 57.0 7.7e-108 387.5
Vvi11g140 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 71.3 1.6e-134 476.1
Vvi11g254 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.5 3.2e-106 382.1
Vvi14g1310 . 35 518 MAP Kinase Kinase Gene Family AT5G40440 79.1 1.3e-228 789.3
Vvi9g955 . 91 343 MAP Kinase Kinase Gene Family AT1G51660 53.7 6.8e-86 314.7
Vvi9g955 . 136 335 MAP Kinase Kinase Gene Family AT3G21220 78.0 7.6e-87 317.8
Vvi11g254 . 1 355 MAP Kinase Kinase Gene Family AT5G56580 83.1 3.7e-169 591.3
Vvi11g140 . 7 351 MAP Kinase Kinase Gene Family AT5G56580 60.1 3.8e-118 421.8
Vvi17g168 . 1 219 MAP Kinase Kinase Gene Family AT1G18350 51.4 1.4e-60 230.3
Vvi9g955 . 135 316 MAP Kinase Kinase Gene Family AT1G18350 53.8 3.2e-52 202.6
Vvi17g168 . 1 219 MAP Kinase Kinase Gene Family AT1G73500 55.5 9.5e-65 244.2
Vvi9g955 . 135 313 MAP Kinase Kinase Gene Family AT1G73500 54.7 3.8e-53 205.7
Vvi9g955 . 136 313 MAP Kinase Kinase Gene Family AT1G32320 50.5 1.7e-42 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76041 PF00069 Pkinase 1.70E-65 CL0016 Vvi PK