Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g26 ATGCCACGACAACCTTTTCTTGAAGCCAATGGAGATGCCTTCATATGGACCCGACTTATGACCATTGTACTTGGGGTCTTTCTCACACTCCCAACACTAATTCTCTTTGCTTCATTTCTCAACGAGGAAGGAGACCAAGAACTGGTCCGTTCTTCAACTCAACCTCAACCTCTTCATCCACTCATCAAGAACGCCTGCACCAACACTCTCTACCCTTCTCTCTGCTTCACCACTCTCTCTTCTGCTCCTGCTACTTCCAAGAACACCACCACCCTCCACCATATTCTTGAGATTGCAGTCAATGCAACGGTGAGCTCCGTGATGGATTCTGGGTCCGATATTAAAGCCCTTTTCACCTACCAAGACTTGAATTCTCAAGAGAAGAATGCTCTGAATGATTGCATGGAAATGACAGACCAAACCCTCTATGAACTTGGACAGGCCATTGACGACCTGCATGCTTTCCCGCCATCTATAGGGGATCCTCATCGGTTATACACGAACCTTAAGACCCTTCTCAGTGCAGCCATGACAAATGAGAACACATGCATCGATGGATTCACTGACCTGGAAGAAGCCGATTCTGAAAGCCAGAAGGGTCTCAAGGGACATCTCCAATCCGTCTTAACTCCTATTTCTGGTATGATCAGCAACTGCTTGGCCATTATCAAGTACATGGAAACCATAGCCCTTAGGGACAGAAAGATCATGAATACCACAATGCCAAGGGACGAATTCCCAGCATGGATGACAGCCATTGATCGGAAACTGATTGAAATGGTGCCTAAAATAAGGCCAGACATCGTTGTTGCAAGTGATGGCAGTGGACATTTTAGCACCATTGGGGAAGCAATCAGTACGGCGCCTAACAAGAGCAGTAATCGATTTGTGATTAAAATAAAGGCAGGAGTATACAAGGAAAATGTGGAGATTCCAAGGGAAAAGGTCAATATCATGTTGGTAGGAGAAGGGATGAATTCAACAGTGATCACAGGGTCTAAAAGCTTTGTTGATGGGTTTTCCACCTTCACTTCAGCCACCTTAACTGTGGTTGGAGACAAGTTCTTAGCAAGGGACCTAACCATCATCAACACGGCAGGCCCCGAGAAGCACCAGGCAGTTGCAGTAAGAGTGACCTCCAATTCTGCTTTCTACCGCTGCAACTTCAGCTCGTATCAGGACACCCTCTACGCTCATTCTCTCCGCCAATTCTATCGTGAATGCACAATCCAAGGCACAATAGATTTCATCTTTGGAAATGCAGCAGCAGTCTTCCAAAACTGTCTTATACTCGTTCGCAAACCAAGCCCCGGACAAAAGAACATGATCACTGCTCAAGGGAGAGGAGACCCAAATCAGAACACTGGCATCTCATTACAAAACTGCACCATAGGTTGGTACAAATGGAATAAGTATAGCACTTTAGACACTGTGGAGTACATTGAATACCTGAACTTTGGACCAGGATCAGACACAAGGCACAGAGTCACATGGGGTGGCTACAGAAAGAACTGCAGTGAAGACATAGCCAAGCAGTTTACAGCTGAAGTTTTTCTACATGGAGCCAGTGAGTGGTTAGAGTCCATTGGTTTTCCCCTAGTTCATGGCTCATAA 1614 45.97 MPRQPFLEANGDAFIWTRLMTIVLGVFLTLPTLILFASFLNEEGDQELVRSSTQPQPLHPLIKNACTNTLYPSLCFTTLSSAPATSKNTTTLHHILEIAVNATVSSVMDSGSDIKALFTYQDLNSQEKNALNDCMEMTDQTLYELGQAIDDLHAFPPSIGDPHRLYTNLKTLLSAAMTNENTCIDGFTDLEEADSESQKGLKGHLQSVLTPISGMISNCLAIIKYMETIALRDRKIMNTTMPRDEFPAWMTAIDRKLIEMVPKIRPDIVVASDGSGHFSTIGEAISTAPNKSSNRFVIKIKAGVYKENVEIPREKVNIMLVGEGMNSTVITGSKSFVDGFSTFTSATLTVVGDKFLARDLTIINTAGPEKHQAVAVRVTSNSAFYRCNFSSYQDTLYAHSLRQFYRECTIQGTIDFIFGNAAAVFQNCLILVRKPSPGQKNMITAQGRGDPNQNTGISLQNCTIGWYKWNKYSTLDTVEYIEYLNFGPGSDTRHRVTWGGYRKNCSEDIAKQFTAEVFLHGASEWLESIGFPLVHGS* 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 494465 497941 + Vvi11g26 Vvi11g26 771467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g26 537 Gene3D Invertase/pectin methylesterase inhibitor family protein 59 227 IPR035513 -
Vvi11g26 537 Pfam Pectinesterase 465 521 IPR000070 GO:0030599|GO:0042545
Vvi11g26 537 Pfam Pectinesterase 267 464 IPR000070 GO:0030599|GO:0042545
Vvi11g26 537 PANTHER PECTINESTERASE 465 536 - -
Vvi11g26 537 PANTHER PECTINESTERASE 23 464 - -
Vvi11g26 537 CDD PMEI-like_3 65 226 - -
Vvi11g26 537 Gene3D - 465 536 IPR012334 -
Vvi11g26 537 Gene3D - 264 464 IPR012334 -
Vvi11g26 537 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 226 IPR035513 -
Vvi11g26 537 SMART PMEI_2 57 222 IPR006501 GO:0004857
Vvi11g26 537 SUPERFAMILY Pectin lyase-like 264 533 IPR011050 -
Vvi11g26 537 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
Vvi11g26 537 Pfam Plant invertase/pectin methylesterase inhibitor 61 222 IPR006501 GO:0004857
Vvi11g26 537 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 225 IPR006501 GO:0004857
Vvi11g26 537 PANTHER PECTINESTERASE 23 464 - -
Vvi11g26 537 PANTHER PECTINESTERASE 465 536 - -
Vvi11g26 537 Coils Coil 120 140 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g26 K01051 - nnu:104609398 664.455